Wall clock time and date at job start Sat Apr 11 2020 08:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00510 * 2 1 4 4 H 1.48492 * 109.47228 * 240.00400 * 3 2 1 5 5 H 1.48498 * 109.46720 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47036 * 119.99984 * 3 2 1 7 7 C 1.37879 * 119.99644 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99816 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00378 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47314 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.47109 * 179.97438 * 10 9 7 12 12 C 1.46950 * 124.34936 * 90.00125 * 11 10 9 13 13 C 1.53709 * 105.31353 * 196.31383 * 12 11 10 14 14 C 1.53825 * 102.60856 * 335.42926 * 13 12 11 15 15 C 1.34503 * 124.35525 * 270.00365 * 11 10 9 16 16 O 1.21283 * 124.94133 * 359.58506 * 15 11 10 17 17 C 1.52270 * 110.80897 * 217.11058 * 13 12 11 18 18 C 1.53210 * 109.34909 * 289.15420 * 17 13 12 19 19 C 1.53042 * 109.46584 * 300.10873 * 18 17 13 20 20 C 1.52774 * 109.57565 * 61.78508 * 19 18 17 21 21 N 1.45962 * 110.78965 * 93.71232 * 13 12 11 22 22 C 1.34779 * 120.65221 * 252.05227 * 21 13 12 23 23 O 1.21280 * 119.99929 * 5.18413 * 22 21 13 24 24 C 1.50697 * 119.99820 * 185.18094 * 22 21 13 25 25 H 1.08997 * 110.28853 * 40.70253 * 24 22 21 26 26 C 1.54684 * 110.32440 * 278.57121 * 24 22 21 27 27 C 1.54820 * 100.79956 * 217.04452 * 26 24 22 28 28 C 1.51257 * 103.78379 * 23.53349 * 27 26 24 29 29 N 1.27503 * 111.28962 * 344.10275 * 28 27 26 30 30 H 0.97002 * 119.99799 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46836 * 59.99923 * 9 7 2 32 32 H 1.08995 * 109.47240 * 300.00497 * 9 7 2 33 33 H 1.09002 * 109.47330 * 60.00105 * 10 9 7 34 34 H 1.08997 * 109.47212 * 299.99824 * 10 9 7 35 35 H 1.09004 * 110.27544 * 77.34746 * 12 11 10 36 36 H 1.09004 * 110.35420 * 315.31317 * 12 11 10 37 37 H 1.09000 * 110.51197 * 142.62241 * 14 13 12 38 38 H 1.09003 * 110.51434 * 265.33839 * 14 13 12 39 39 H 1.08998 * 109.48923 * 49.11730 * 17 13 12 40 40 H 1.08999 * 109.49314 * 169.16571 * 17 13 12 41 41 H 1.08998 * 109.47346 * 60.10621 * 18 17 13 42 42 H 1.08998 * 109.47513 * 180.11483 * 18 17 13 43 43 H 1.09003 * 109.46636 * 181.92270 * 19 18 17 44 44 H 1.09003 * 109.46924 * 301.91057 * 19 18 17 45 45 H 1.09001 * 109.54047 * 185.15179 * 20 19 18 46 46 H 1.09004 * 109.44947 * 64.78749 * 20 19 18 47 47 H 1.09003 * 111.15356 * 334.93335 * 26 24 22 48 48 H 1.09003 * 111.15040 * 99.11812 * 26 24 22 49 49 H 1.09003 * 110.56569 * 142.10876 * 27 26 24 50 50 H 1.09001 * 110.56428 * 264.80827 * 27 26 24 51 51 H 1.08005 * 124.38063 * 164.10306 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5125 -4.9308 0.0001 12 6 1.0975 -5.6492 -1.2128 13 6 0.0351 -6.6565 -0.7445 14 6 0.3908 -6.8545 0.7389 15 6 1.1333 -5.5878 1.1108 16 8 1.3542 -5.2197 2.2451 17 6 0.1580 -7.9673 -1.5097 18 6 -0.3000 -7.7554 -2.9563 19 6 -1.7575 -7.2888 -2.9667 20 6 -1.8724 -5.9523 -2.2357 21 7 -1.3060 -6.0981 -0.8854 22 6 -2.0140 -5.7285 0.2002 23 8 -1.5041 -5.7702 1.2998 24 6 -3.4393 -5.2634 0.0478 25 1 -3.9626 -5.8814 -0.6818 26 6 -3.4767 -3.7777 -0.3813 27 6 -4.7083 -3.2775 0.4122 28 6 -4.8189 -4.2557 1.5605 29 7 -4.1305 -5.3064 1.3415 30 1 -0.4850 0.8401 -0.0004 31 1 0.6239 -2.5567 -0.8903 32 1 0.6246 -2.5571 0.8896 33 1 2.8718 -3.6044 0.8895 34 1 2.8717 -3.6044 -0.8905 35 1 1.9473 -6.1727 -1.6512 36 1 0.6679 -4.9559 -1.9359 37 1 -0.5138 -6.9570 1.3382 38 1 1.0342 -7.7254 0.8646 39 1 1.1968 -8.2971 -1.5016 40 1 -0.4676 -8.7244 -1.0369 41 1 0.3269 -6.9993 -3.4288 42 1 -0.2148 -8.6931 -3.5054 43 1 -2.0939 -7.1709 -3.9968 44 1 -2.3797 -8.0294 -2.4639 45 1 -2.9214 -5.6652 -2.1633 46 1 -1.3190 -5.1899 -2.7841 47 1 -2.5710 -3.2560 -0.0719 48 1 -3.6348 -3.6824 -1.4556 49 1 -4.5392 -2.2672 0.7849 50 1 -5.6033 -3.3103 -0.2092 51 1 -5.4053 -4.0865 2.4516 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271517144.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:25:14 Heat of formation + Delta-G solvation = -11.165025 kcal Electronic energy + Delta-G solvation = -33394.798225 eV Core-core repulsion = 29295.467293 eV Total energy + Delta-G solvation = -4099.330932 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.56840 -39.61761 -38.20849 -37.37997 -35.35819 -33.86274 -33.18597 -32.29715 -30.36868 -29.79414 -29.17454 -27.89891 -26.69089 -24.92414 -24.01563 -22.84115 -21.99859 -21.29471 -20.95928 -19.63700 -18.84260 -18.29194 -17.34136 -16.64151 -16.33776 -15.98497 -15.74835 -15.30322 -14.93565 -14.68292 -14.61610 -14.47668 -14.33301 -13.94678 -13.75651 -13.52640 -13.12102 -12.94400 -12.85235 -12.69632 -12.50234 -12.35583 -12.14714 -12.11409 -11.89507 -11.68839 -11.45436 -11.39310 -11.21262 -11.06316 -10.91470 -10.86714 -10.81836 -10.69775 -10.01786 -9.92082 -9.84191 -9.62960 -9.26953 -8.94869 -8.78215 -8.47157 -8.34853 -7.83027 -6.00828 -4.03322 2.11504 2.60991 2.85454 3.33020 3.36965 3.39155 3.44043 3.75678 4.17139 4.22029 4.43852 4.46897 4.50077 4.53951 4.62495 4.68691 4.81188 4.82252 4.88150 4.95788 5.16121 5.24438 5.26908 5.35085 5.35468 5.38009 5.41322 5.57285 5.67760 5.68496 5.71437 5.74312 5.76053 5.82976 5.86168 5.88961 6.04194 6.12177 6.14591 6.20724 6.35385 6.55097 6.80836 6.89283 7.18172 7.34120 7.56048 7.60506 7.75226 7.99058 8.01811 8.32435 8.38037 8.96920 9.05112 9.60010 11.10540 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008871 B = 0.004581 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3155.603042 B = 6111.102557 C = 7544.703177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.018 3.982 10 C 0.129 3.871 11 N -0.618 5.618 12 C 0.099 3.901 13 C 0.165 3.835 14 C -0.193 4.193 15 C 0.532 3.468 16 O -0.531 6.531 17 C -0.113 4.113 18 C -0.121 4.121 19 C -0.135 4.135 20 C 0.103 3.897 21 N -0.597 5.597 22 C 0.532 3.468 23 O -0.491 6.491 24 C 0.023 3.977 25 H 0.109 0.891 26 C -0.141 4.141 27 C -0.149 4.149 28 C 0.136 3.864 29 N -0.474 5.474 30 H 0.260 0.740 31 H 0.012 0.988 32 H 0.019 0.981 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.169 0.831 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.093 0.907 48 H 0.087 0.913 49 H 0.094 0.906 50 H 0.090 0.910 51 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.166 -16.089 -10.078 21.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.020 4.020 10 C 0.009 3.991 11 N -0.352 5.352 12 C -0.026 4.026 13 C 0.080 3.920 14 C -0.232 4.232 15 C 0.320 3.680 16 O -0.408 6.408 17 C -0.152 4.152 18 C -0.159 4.159 19 C -0.173 4.173 20 C -0.019 4.019 21 N -0.331 5.331 22 C 0.320 3.680 23 O -0.366 6.366 24 C -0.090 4.090 25 H 0.126 0.874 26 C -0.180 4.180 27 C -0.189 4.189 28 C -0.079 4.079 29 N -0.180 5.180 30 H 0.069 0.931 31 H 0.030 0.970 32 H 0.037 0.963 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.185 0.815 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.104 0.896 46 H 0.094 0.906 47 H 0.112 0.888 48 H 0.106 0.894 49 H 0.112 0.888 50 H 0.108 0.892 51 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -9.528 -16.677 -8.544 21.021 hybrid contribution 0.378 1.827 -0.900 2.071 sum -9.149 -14.850 -9.444 19.835 Atomic orbital electron populations 1.69963 1.06064 1.26575 1.50571 1.24975 0.94854 0.99167 0.95142 0.86631 0.79587 0.82976 0.78655 1.20248 1.21273 1.20151 1.21077 0.92981 0.90788 1.51092 0.92634 1.19332 0.94347 0.91022 0.97335 1.21714 0.94990 0.81365 1.01007 1.48526 1.57289 1.23545 1.05886 1.22313 0.96473 0.94722 0.89127 1.20689 0.81822 0.92888 0.96645 1.23711 1.06111 0.97326 0.96067 1.20494 0.77923 0.85079 0.84519 1.90656 1.57382 1.71430 1.21297 1.21726 1.02594 0.95450 0.95407 1.21566 0.96151 1.01866 0.96293 1.21846 0.97565 0.97109 1.00760 1.21798 0.99545 0.97974 0.82597 1.47605 1.15754 1.63419 1.06361 1.20163 0.87098 0.76753 0.83973 1.90514 1.69613 1.50067 1.26396 1.22959 0.93770 0.98246 0.93994 0.87368 1.23070 1.00365 0.93317 1.01230 1.22524 0.98383 1.01650 0.96303 1.26835 0.93234 0.90376 0.97409 1.72895 1.06868 1.25276 1.12948 0.93050 0.96986 0.96257 0.91314 0.92044 0.91029 0.90396 0.81522 0.89562 0.90094 0.90798 0.91222 0.91285 0.90438 0.91392 0.89626 0.90609 0.88802 0.89437 0.88801 0.89174 0.80740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.02 0.48 5.30 -27.89 -0.15 0.34 16 10 C 0.13 2.97 5.88 -4.04 -0.02 2.94 16 11 N -0.62 -12.49 2.94 -172.64 -0.51 -12.99 16 12 C 0.10 1.46 5.92 -3.43 -0.02 1.44 16 13 C 0.17 2.18 0.87 -131.68 -0.11 2.06 16 14 C -0.19 -3.24 5.38 -27.08 -0.15 -3.38 16 15 C 0.53 11.69 6.82 -10.74 -0.07 11.61 16 16 O -0.53 -14.26 17.59 5.55 0.10 -14.17 16 17 C -0.11 -1.02 4.69 -27.00 -0.13 -1.14 16 18 C -0.12 -0.85 5.79 -26.60 -0.15 -1.01 16 19 C -0.13 -0.91 6.04 -26.83 -0.16 -1.08 16 20 C 0.10 0.95 5.89 -3.81 -0.02 0.93 16 21 N -0.60 -7.83 2.70 -158.35 -0.43 -8.26 16 22 C 0.53 8.67 6.74 -10.99 -0.07 8.59 16 23 O -0.49 -10.25 11.38 5.56 0.06 -10.19 16 24 C 0.02 0.31 2.96 -68.07 -0.20 0.11 16 25 H 0.11 1.14 6.84 -51.93 -0.36 0.78 16 26 C -0.14 -1.85 6.34 -24.89 -0.16 -2.01 16 27 C -0.15 -1.62 6.90 -26.65 -0.18 -1.80 16 28 C 0.14 1.59 12.07 -13.80 -0.17 1.42 16 29 N -0.47 -7.01 10.63 -52.05 -0.55 -7.56 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.68 7.92 -51.93 -0.41 1.27 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.07 0.87 7.73 -51.93 -0.40 0.47 16 36 H 0.08 1.17 7.14 -51.93 -0.37 0.80 16 37 H 0.17 3.18 4.51 -57.66 -0.26 2.92 16 38 H 0.09 1.22 7.87 -51.93 -0.41 0.81 16 39 H 0.08 0.65 7.94 -51.93 -0.41 0.23 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.50 7.65 -51.93 -0.40 0.10 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.67 5.05 -51.93 -0.26 0.41 16 46 H 0.08 0.73 7.43 -51.93 -0.39 0.34 16 47 H 0.09 1.70 7.91 -51.93 -0.41 1.29 16 48 H 0.09 0.92 7.71 -51.93 -0.40 0.52 16 49 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 50 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.18 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 394.62 15.07 5.95 5.95 Total: -1.00 -39.01 394.62 -10.09 -49.11 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -8.25 Total: 2.17 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -2.18 Total: 5.22 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.75 Total: -55.05 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: 0.16 Total: -24.36 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -39.01 -10.09 -49.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271517144.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.941 kcal (2) G-P(sol) polarization free energy of solvation -39.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds