Wall clock time and date at job start Sat Apr 11 2020 08:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00510 * 2 1 4 4 H 1.48492 * 109.47228 * 240.00400 * 3 2 1 5 5 H 1.48498 * 109.46720 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47036 * 119.99984 * 3 2 1 7 7 C 1.37879 * 119.99644 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99816 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00378 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47314 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.47109 * 179.97438 * 10 9 7 12 12 C 1.46950 * 124.34936 * 90.00125 * 11 10 9 13 13 C 1.53709 * 105.31353 * 196.31383 * 12 11 10 14 14 C 1.53825 * 102.60856 * 335.42926 * 13 12 11 15 15 C 1.34503 * 124.35525 * 270.00365 * 11 10 9 16 16 O 1.21283 * 124.94133 * 359.58506 * 15 11 10 17 17 C 1.52270 * 110.80897 * 217.11058 * 13 12 11 18 18 C 1.53210 * 109.34909 * 289.15420 * 17 13 12 19 19 C 1.53042 * 109.46584 * 300.10873 * 18 17 13 20 20 C 1.52774 * 109.57565 * 61.78508 * 19 18 17 21 21 N 1.45962 * 110.78965 * 93.71232 * 13 12 11 22 22 C 1.34779 * 120.65221 * 252.05227 * 21 13 12 23 23 O 1.21280 * 119.99929 * 5.18413 * 22 21 13 24 24 C 1.50697 * 119.99820 * 185.18094 * 22 21 13 25 25 H 1.08997 * 110.28853 * 40.70253 * 24 22 21 26 26 C 1.54684 * 110.32440 * 278.57121 * 24 22 21 27 27 C 1.54820 * 100.79956 * 217.04452 * 26 24 22 28 28 C 1.51257 * 103.78379 * 23.53349 * 27 26 24 29 29 N 1.27503 * 111.28962 * 344.10275 * 28 27 26 30 30 H 0.97002 * 119.99799 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46836 * 59.99923 * 9 7 2 32 32 H 1.08995 * 109.47240 * 300.00497 * 9 7 2 33 33 H 1.09002 * 109.47330 * 60.00105 * 10 9 7 34 34 H 1.08997 * 109.47212 * 299.99824 * 10 9 7 35 35 H 1.09004 * 110.27544 * 77.34746 * 12 11 10 36 36 H 1.09004 * 110.35420 * 315.31317 * 12 11 10 37 37 H 1.09000 * 110.51197 * 142.62241 * 14 13 12 38 38 H 1.09003 * 110.51434 * 265.33839 * 14 13 12 39 39 H 1.08998 * 109.48923 * 49.11730 * 17 13 12 40 40 H 1.08999 * 109.49314 * 169.16571 * 17 13 12 41 41 H 1.08998 * 109.47346 * 60.10621 * 18 17 13 42 42 H 1.08998 * 109.47513 * 180.11483 * 18 17 13 43 43 H 1.09003 * 109.46636 * 181.92270 * 19 18 17 44 44 H 1.09003 * 109.46924 * 301.91057 * 19 18 17 45 45 H 1.09001 * 109.54047 * 185.15179 * 20 19 18 46 46 H 1.09004 * 109.44947 * 64.78749 * 20 19 18 47 47 H 1.09003 * 111.15356 * 334.93335 * 26 24 22 48 48 H 1.09003 * 111.15040 * 99.11812 * 26 24 22 49 49 H 1.09003 * 110.56569 * 142.10876 * 27 26 24 50 50 H 1.09001 * 110.56428 * 264.80827 * 27 26 24 51 51 H 1.08005 * 124.38063 * 164.10306 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5125 -4.9308 0.0001 12 6 1.0975 -5.6492 -1.2128 13 6 0.0351 -6.6565 -0.7445 14 6 0.3908 -6.8545 0.7389 15 6 1.1333 -5.5878 1.1108 16 8 1.3542 -5.2197 2.2451 17 6 0.1580 -7.9673 -1.5097 18 6 -0.3000 -7.7554 -2.9563 19 6 -1.7575 -7.2888 -2.9667 20 6 -1.8724 -5.9523 -2.2357 21 7 -1.3060 -6.0981 -0.8854 22 6 -2.0140 -5.7285 0.2002 23 8 -1.5041 -5.7702 1.2998 24 6 -3.4393 -5.2634 0.0478 25 1 -3.9626 -5.8814 -0.6818 26 6 -3.4767 -3.7777 -0.3813 27 6 -4.7083 -3.2775 0.4122 28 6 -4.8189 -4.2557 1.5605 29 7 -4.1305 -5.3064 1.3415 30 1 -0.4850 0.8401 -0.0004 31 1 0.6239 -2.5567 -0.8903 32 1 0.6246 -2.5571 0.8896 33 1 2.8718 -3.6044 0.8895 34 1 2.8717 -3.6044 -0.8905 35 1 1.9473 -6.1727 -1.6512 36 1 0.6679 -4.9559 -1.9359 37 1 -0.5138 -6.9570 1.3382 38 1 1.0342 -7.7254 0.8646 39 1 1.1968 -8.2971 -1.5016 40 1 -0.4676 -8.7244 -1.0369 41 1 0.3269 -6.9993 -3.4288 42 1 -0.2148 -8.6931 -3.5054 43 1 -2.0939 -7.1709 -3.9968 44 1 -2.3797 -8.0294 -2.4639 45 1 -2.9214 -5.6652 -2.1633 46 1 -1.3190 -5.1899 -2.7841 47 1 -2.5710 -3.2560 -0.0719 48 1 -3.6348 -3.6824 -1.4556 49 1 -4.5392 -2.2672 0.7849 50 1 -5.6033 -3.3103 -0.2092 51 1 -5.4053 -4.0865 2.4516 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271517144.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:25:13 Heat of formation + Delta-G solvation = -40.647381 kcal Electronic energy + Delta-G solvation = -33396.076676 eV Core-core repulsion = 29295.467293 eV Total energy + Delta-G solvation = -4100.609383 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.76827 -40.86146 -39.53946 -38.53073 -37.03679 -35.69705 -34.32370 -33.82622 -31.59297 -31.32679 -30.14302 -29.27593 -28.03310 -26.62143 -25.13465 -23.91439 -23.42460 -22.77134 -21.96203 -20.87113 -20.15813 -19.45952 -18.73253 -18.44807 -17.70081 -17.34465 -16.96919 -16.76191 -16.44911 -16.17964 -15.93829 -15.65997 -15.28509 -15.05404 -14.86371 -14.69477 -14.61471 -14.38288 -14.13098 -14.10251 -13.95765 -13.78804 -13.49118 -13.25600 -13.11532 -13.07448 -12.87979 -12.68267 -12.64878 -12.44234 -12.22346 -12.03586 -11.90967 -11.87937 -11.60853 -11.49438 -11.47190 -11.06285 -10.72143 -10.63592 -10.62482 -9.93171 -9.78986 -9.45812 -8.27086 -6.41103 1.15647 1.34608 1.36758 1.40190 1.47411 1.75514 1.86365 2.15748 2.38329 3.05223 3.13112 3.23367 3.39697 3.45536 3.60413 3.67299 3.77966 3.91878 3.97126 4.03424 4.12101 4.21451 4.25227 4.26685 4.36578 4.41760 4.48278 4.52984 4.55209 4.61417 4.69856 4.78573 4.80492 4.91580 4.93237 4.98396 5.02924 5.04877 5.10563 5.21082 5.25245 5.28216 5.35307 5.38081 5.50377 5.55970 5.68867 5.77580 6.10118 6.27120 6.28862 6.61412 6.72400 7.13607 7.26403 7.29318 8.84844 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008871 B = 0.004581 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3155.603042 B = 6111.102557 C = 7544.703177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.004 3.996 3 Si 0.972 3.028 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.550 4.550 8 H 0.065 0.935 9 C 0.039 3.961 10 C 0.141 3.859 11 N -0.621 5.621 12 C 0.092 3.908 13 C 0.171 3.829 14 C -0.184 4.184 15 C 0.515 3.485 16 O -0.599 6.599 17 C -0.105 4.105 18 C -0.119 4.119 19 C -0.127 4.127 20 C 0.093 3.907 21 N -0.594 5.594 22 C 0.516 3.484 23 O -0.551 6.551 24 C 0.029 3.971 25 H 0.143 0.857 26 C -0.139 4.139 27 C -0.144 4.144 28 C 0.143 3.857 29 N -0.522 5.522 30 H 0.265 0.735 31 H -0.003 1.003 32 H -0.044 1.044 33 H 0.046 0.954 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.077 0.923 37 H 0.149 0.851 38 H 0.115 0.885 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.071 0.929 45 H 0.100 0.900 46 H 0.072 0.928 47 H 0.028 0.972 48 H 0.117 0.883 49 H 0.084 0.916 50 H 0.132 0.868 51 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.613 -17.100 -13.788 24.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.795 3.205 4 H -0.181 1.181 5 H -0.204 1.204 6 H -0.199 1.199 7 C -0.588 4.588 8 H 0.084 0.916 9 C 0.001 3.999 10 C 0.019 3.981 11 N -0.354 5.354 12 C -0.030 4.030 13 C 0.085 3.915 14 C -0.223 4.223 15 C 0.306 3.694 16 O -0.480 6.480 17 C -0.144 4.144 18 C -0.156 4.156 19 C -0.165 4.165 20 C -0.028 4.028 21 N -0.327 5.327 22 C 0.306 3.694 23 O -0.431 6.431 24 C -0.083 4.083 25 H 0.160 0.840 26 C -0.178 4.178 27 C -0.183 4.183 28 C -0.070 4.070 29 N -0.229 5.229 30 H 0.074 0.926 31 H 0.015 0.985 32 H -0.026 1.026 33 H 0.064 0.936 34 H 0.113 0.887 35 H 0.130 0.870 36 H 0.095 0.905 37 H 0.166 0.834 38 H 0.133 0.867 39 H 0.117 0.883 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.113 0.887 43 H 0.122 0.878 44 H 0.090 0.910 45 H 0.118 0.882 46 H 0.090 0.910 47 H 0.047 0.953 48 H 0.136 0.864 49 H 0.103 0.897 50 H 0.150 0.850 51 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -9.987 -17.723 -12.360 23.804 hybrid contribution 0.466 2.204 0.275 2.269 sum -9.520 -15.519 -12.085 21.852 Atomic orbital electron populations 1.70119 1.07935 1.27948 1.50655 1.26025 0.95856 1.03518 0.94086 0.85407 0.78266 0.77476 0.79319 1.18099 1.20403 1.19893 1.21482 0.93660 0.91711 1.51977 0.91642 1.19046 0.94133 0.93309 0.93442 1.21359 0.93968 0.81359 1.01406 1.48625 1.56434 1.22540 1.07796 1.22748 0.98578 0.94881 0.86842 1.20861 0.81408 0.94709 0.94482 1.23569 1.04992 0.95197 0.98560 1.21523 0.77314 0.86743 0.83866 1.90589 1.59891 1.73527 1.23994 1.21752 1.04151 0.92326 0.96132 1.21604 0.96036 1.03273 0.94721 1.21836 0.97806 0.95107 1.01711 1.22150 1.00117 0.99977 0.80507 1.47801 1.15553 1.62020 1.07282 1.20853 0.88498 0.76181 0.83910 1.90513 1.71032 1.52783 1.28771 1.22998 0.92374 0.98371 0.94576 0.83954 1.23014 0.98613 0.92923 1.03291 1.22579 0.98734 1.00645 0.96353 1.27408 0.91978 0.89431 0.98211 1.72893 1.08679 1.27289 1.14054 0.92642 0.98513 1.02583 0.93577 0.88693 0.86973 0.90493 0.83440 0.86697 0.88250 0.90202 0.91009 0.88731 0.87808 0.90999 0.88209 0.90964 0.95254 0.86420 0.89710 0.85037 0.77854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.13 13.29 21.45 0.28 -57.84 16 2 C 0.00 0.22 5.46 84.66 0.46 0.69 16 3 Si 0.97 45.47 29.54 68.60 2.03 47.50 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 7 C -0.55 -33.15 9.11 25.60 0.23 -32.92 16 8 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 9 C 0.04 2.27 5.30 29.85 0.16 2.43 16 10 C 0.14 6.76 5.88 86.38 0.51 7.27 16 11 N -0.62 -26.19 2.94 -818.66 -2.41 -28.60 16 12 C 0.09 2.65 5.92 86.53 0.51 3.16 16 13 C 0.17 4.35 0.87 3.98 0.00 4.35 16 14 C -0.18 -6.39 5.38 30.37 0.16 -6.22 16 15 C 0.52 24.22 6.82 87.94 0.60 24.82 16 16 O -0.60 -35.19 17.59 -3.04 -0.05 -35.24 16 17 C -0.11 -1.53 4.69 30.42 0.14 -1.38 16 18 C -0.12 -1.13 5.79 30.68 0.18 -0.95 16 19 C -0.13 -1.20 6.04 30.53 0.18 -1.02 16 20 C 0.09 1.53 5.89 86.18 0.51 2.04 16 21 N -0.59 -15.47 2.70 -773.30 -2.08 -17.56 16 22 C 0.52 17.72 6.74 87.66 0.59 18.31 16 23 O -0.55 -25.12 11.38 -3.03 -0.03 -25.15 16 24 C 0.03 0.81 2.96 44.77 0.13 0.94 16 25 H 0.14 2.76 6.84 -2.39 -0.02 2.74 16 26 C -0.14 -3.81 6.34 31.79 0.20 -3.61 16 27 C -0.14 -3.07 6.90 30.65 0.21 -2.85 16 28 C 0.14 3.34 12.07 88.91 1.07 4.41 16 29 N -0.52 -15.91 10.63 -317.77 -3.38 -19.28 16 30 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 31 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H -0.04 -3.13 8.14 -2.39 -0.02 -3.15 16 33 H 0.05 2.40 7.92 -2.39 -0.02 2.38 16 34 H 0.09 3.90 8.14 -2.39 -0.02 3.88 16 35 H 0.11 2.36 7.73 -2.38 -0.02 2.34 16 36 H 0.08 2.24 7.14 -2.38 -0.02 2.23 16 37 H 0.15 6.03 4.51 -93.20 -0.42 5.61 16 38 H 0.12 3.21 7.87 -2.39 -0.02 3.19 16 39 H 0.10 1.13 7.94 -2.39 -0.02 1.11 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 0.70 7.65 -2.39 -0.02 0.68 16 42 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.10 1.32 5.05 -2.39 -0.01 1.31 16 46 H 0.07 1.26 7.43 -2.39 -0.02 1.24 16 47 H 0.03 1.17 7.91 -2.39 -0.02 1.15 16 48 H 0.12 2.37 7.71 -2.39 -0.02 2.35 16 49 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 50 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 51 H 0.20 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -96.75 394.62 0.73 -96.02 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.52 Total: 20.68 kcal Atomic # 6 Polarization: 13.60 SS G_CDS: 5.86 Total: 19.46 kcal Atomic # 7 Polarization: -115.69 SS G_CDS: -7.58 Total: -123.28 kcal Atomic # 8 Polarization: -60.30 SS G_CDS: -0.09 Total: -60.39 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -96.75 0.73 -96.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271517144.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.375 kcal (2) G-P(sol) polarization free energy of solvation -96.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds