Wall clock time and date at job start Sat Apr 11 2020 08:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00300 * 2 1 4 4 H 1.48501 * 109.46861 * 239.99560 * 3 2 1 5 5 H 1.48495 * 109.46759 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47110 * 119.99640 * 3 2 1 7 7 C 1.38814 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00154 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99947 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00155 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47285 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.46868 * 304.99609 * 11 10 9 13 13 C 1.52999 * 109.47208 * 64.99515 * 11 10 9 14 14 C 1.52994 * 109.46962 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47334 * 299.99893 * 14 13 11 16 16 H 1.08996 * 109.47398 * 300.00032 * 15 14 13 17 17 C 1.53007 * 109.47109 * 179.97438 * 15 14 13 18 18 N 1.46493 * 109.46876 * 65.00705 * 17 15 14 19 19 C 1.34780 * 120.00142 * 180.02562 * 18 17 15 20 20 O 1.21582 * 119.99464 * 359.97438 * 19 18 17 21 21 C 1.47513 * 120.00300 * 179.97438 * 19 18 17 22 22 C 1.36819 * 126.94237 * 180.02562 * 21 19 18 23 23 C 1.41264 * 103.84392 * 179.97438 * 22 21 19 24 24 C 1.50706 * 126.70187 * 179.97438 * 23 22 21 25 25 C 1.52995 * 117.50181 * 343.74690 * 24 23 22 26 26 C 1.52993 * 117.50081 * 275.08456 * 24 23 22 27 27 N 1.30118 * 106.59200 * 0.22173 * 23 22 21 28 28 O 1.20891 * 111.98383 * 359.59668 * 27 23 22 29 29 C 1.53002 * 109.46912 * 60.00495 * 15 14 13 30 30 C 1.52992 * 109.46926 * 184.99729 * 11 10 9 31 31 H 0.97001 * 119.99693 * 0.02562 * 1 2 3 32 32 H 0.96995 * 120.00257 * 359.97438 * 9 7 2 33 33 H 1.08995 * 109.47478 * 59.99111 * 10 9 7 34 34 H 1.09001 * 109.46886 * 299.99214 * 10 9 7 35 35 H 1.09006 * 109.47011 * 300.00099 * 13 11 10 36 36 H 1.09005 * 109.46664 * 60.00002 * 13 11 10 37 37 H 1.09008 * 109.47048 * 179.97438 * 14 13 11 38 38 H 1.09005 * 109.47445 * 60.00461 * 14 13 11 39 39 H 1.08997 * 109.47156 * 305.00288 * 17 15 14 40 40 H 1.08999 * 109.46942 * 185.00165 * 17 15 14 41 41 H 0.97001 * 120.00422 * 359.97438 * 18 17 15 42 42 H 1.07998 * 128.08194 * 359.93061 * 22 21 19 43 43 H 1.08998 * 115.54512 * 129.41453 * 24 23 22 44 44 H 1.09000 * 117.49859 * 0.02562 * 25 24 23 45 45 H 1.08999 * 117.49900 * 145.01759 * 25 24 23 46 46 H 1.08998 * 117.50372 * 214.98309 * 26 24 23 47 47 H 1.09006 * 117.50059 * 359.97438 * 26 24 23 48 48 H 1.08996 * 109.47467 * 59.99579 * 29 15 14 49 49 H 1.09006 * 109.46914 * 180.02562 * 29 15 14 50 50 H 1.08999 * 109.47521 * 59.99983 * 30 11 10 51 51 H 1.08996 * 109.47357 * 299.99587 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6569 0.0017 11 6 1.0637 -4.8198 0.0021 12 1 0.3793 -4.7123 0.8436 13 6 0.2693 -4.8121 -1.3055 14 6 -0.7253 -5.9746 -1.3048 15 6 0.0349 -7.2962 -1.1777 16 1 0.7192 -7.4041 -2.0192 17 6 -0.9599 -8.4587 -1.1764 18 7 -1.6363 -8.5240 -2.4742 19 6 -2.5623 -9.4760 -2.7044 20 8 -2.8358 -10.2807 -1.8350 21 6 -3.2438 -9.5414 -4.0110 22 6 -4.1998 -10.4415 -4.3956 23 6 -4.5086 -10.0611 -5.7206 24 6 -5.5095 -10.7178 -6.6361 25 6 -5.9975 -12.1184 -6.2609 26 6 -5.0408 -11.9314 -7.4410 27 7 -3.7561 -9.0365 -5.9979 28 8 -3.0512 -8.7271 -5.0658 29 6 0.8292 -7.3039 0.1299 30 6 1.8245 -6.1411 0.1289 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3881 0.0005 33 1 2.6840 -3.7142 0.8920 34 1 2.6852 -3.7151 -0.8879 35 1 -0.2727 -3.8706 -1.3958 36 1 0.9538 -4.9195 -2.1470 37 1 -1.2916 -5.9688 -2.2362 38 1 -1.4098 -5.8667 -0.4633 39 1 -1.6980 -8.3044 -0.3893 40 1 -0.4272 -9.3925 -0.9969 41 1 -1.4184 -7.8817 -3.1676 42 1 -4.6198 -11.2536 -3.8208 43 1 -6.2251 -10.0456 -7.1096 44 1 -5.5950 -12.5649 -5.3517 45 1 -7.0340 -12.3679 -6.4880 46 1 -5.4482 -12.0580 -8.4441 47 1 -4.0082 -12.2548 -7.3088 48 1 0.1449 -7.1960 0.9714 49 1 1.3712 -8.2453 0.2203 50 1 2.3904 -6.1466 1.0605 51 1 2.5088 -6.2486 -0.7126 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271783410.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:25:28 Heat of formation + Delta-G solvation = 36.594549 kcal Electronic energy + Delta-G solvation = -29404.488894 eV Core-core repulsion = 25307.228973 eV Total energy + Delta-G solvation = -4097.259921 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.44953 -40.17365 -38.80226 -38.13788 -35.76878 -34.27861 -33.75150 -32.64013 -31.85528 -30.61755 -29.98892 -27.03360 -25.20475 -24.80349 -23.69358 -22.90251 -22.83144 -22.38153 -21.77480 -20.62300 -20.12876 -19.55944 -18.75247 -18.18846 -17.07352 -16.73518 -16.43438 -15.99880 -15.71852 -15.09674 -14.88054 -14.73696 -14.52654 -14.14649 -14.06326 -13.93682 -13.70174 -13.21629 -13.01034 -12.84796 -12.69589 -12.33875 -12.20873 -12.10650 -12.01355 -11.70237 -11.57748 -11.43038 -11.02145 -10.98075 -10.89227 -10.81982 -10.76538 -10.68136 -10.35611 -10.20635 -10.10875 -10.10484 -9.94500 -9.76225 -9.53232 -9.45790 -8.82889 -6.87123 -5.73333 -3.01097 0.38268 1.54279 2.18688 2.59235 2.81705 3.07617 3.45919 3.49469 3.50137 3.51280 4.04129 4.22551 4.36851 4.46801 4.49037 4.55048 4.62076 4.68102 4.76483 4.78898 4.91603 5.06431 5.15615 5.25639 5.30069 5.32228 5.40293 5.44476 5.48154 5.51391 5.54338 5.61243 5.62341 5.65950 5.71576 5.73056 5.91420 6.04680 6.12437 6.21705 6.28262 6.30729 6.35709 6.44736 6.58771 6.76298 6.90211 6.92341 7.00755 7.54347 7.68908 7.72567 8.46233 9.57084 10.16710 10.51276 11.49634 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015967 B = 0.001683 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.191287 B =16636.852582 C =17959.201535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.156 3.844 11 C -0.094 4.094 12 H 0.069 0.931 13 C -0.109 4.109 14 C -0.115 4.115 15 C -0.099 4.099 16 H 0.078 0.922 17 C 0.122 3.878 18 N -0.709 5.709 19 C 0.605 3.395 20 O -0.514 6.514 21 C -0.082 4.082 22 C -0.147 4.147 23 C 0.041 3.959 24 C -0.090 4.090 25 C -0.162 4.162 26 C -0.162 4.162 27 N -0.336 5.336 28 O 0.122 5.878 29 C -0.108 4.108 30 C -0.110 4.110 31 H 0.255 0.745 32 H 0.383 0.617 33 H 0.016 0.984 34 H 0.017 0.983 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.410 0.590 42 H 0.183 0.817 43 H 0.127 0.873 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.098 0.902 48 H 0.065 0.935 49 H 0.061 0.939 50 H 0.063 0.937 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.988 -27.630 -10.633 30.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.086 0.914 9 N -0.376 5.376 10 C 0.029 3.971 11 C -0.113 4.113 12 H 0.087 0.913 13 C -0.147 4.147 14 C -0.153 4.153 15 C -0.118 4.118 16 H 0.097 0.903 17 C -0.001 4.001 18 N -0.360 5.360 19 C 0.387 3.613 20 O -0.390 6.390 21 C -0.148 4.148 22 C -0.170 4.170 23 C -0.116 4.116 24 C -0.109 4.109 25 C -0.199 4.199 26 C -0.199 4.199 27 N -0.035 5.035 28 O 0.047 5.953 29 C -0.146 4.146 30 C -0.148 4.148 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.034 0.966 34 H 0.035 0.965 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.246 0.754 42 H 0.200 0.800 43 H 0.145 0.855 44 H 0.119 0.881 45 H 0.125 0.875 46 H 0.123 0.877 47 H 0.116 0.884 48 H 0.084 0.916 49 H 0.080 0.920 50 H 0.081 0.919 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.892 -27.301 -11.063 30.770 hybrid contribution 0.009 0.842 0.169 0.859 sum -8.884 -26.459 -10.894 29.961 Atomic orbital electron populations 1.69644 1.05079 1.25669 1.57947 1.24724 0.95514 0.97624 1.03205 0.86275 0.78515 0.83637 0.77814 1.21334 1.21724 1.21323 1.19202 0.90993 0.84322 1.42460 0.91351 1.42375 1.05836 0.99985 1.89399 1.20690 0.93298 0.85594 0.97529 1.21323 0.97664 0.94292 0.97986 0.91286 1.21519 0.97587 0.98118 0.97469 1.21653 0.98097 0.93862 1.01678 1.21461 0.96540 0.93989 0.99803 0.90340 1.21641 0.95341 0.99362 0.83748 1.45963 1.39899 1.32249 1.17907 1.16491 0.79478 0.81914 0.83373 1.90884 1.64234 1.40679 1.43168 1.24239 1.02761 0.95844 0.92002 1.22781 0.97712 1.01603 0.94865 1.22678 0.99410 0.95235 0.94277 1.20138 0.98863 0.90890 1.00996 1.23082 1.00471 0.96403 0.99986 1.23059 1.00523 0.99520 0.96846 1.73733 1.05194 1.15521 1.09046 1.85024 1.48386 1.45437 1.16408 1.21485 0.98052 0.98700 0.96341 1.21513 0.97456 0.93926 1.01876 0.93535 0.78261 0.96614 0.96537 0.90672 0.92331 0.92424 0.91695 0.90656 0.90885 0.75449 0.79979 0.85537 0.88053 0.87499 0.87652 0.88397 0.91580 0.92003 0.91865 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.38 13.06 55.49 0.72 -27.65 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.73 -18.52 5.33 -59.90 -0.32 -18.84 16 10 C 0.16 3.12 5.65 -4.04 -0.02 3.10 16 11 C -0.09 -1.44 2.22 -90.62 -0.20 -1.64 16 12 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 13 C -0.11 -1.59 5.08 -26.73 -0.14 -1.72 16 14 C -0.12 -1.28 5.07 -26.74 -0.14 -1.42 16 15 C -0.10 -0.90 2.23 -90.62 -0.20 -1.10 16 16 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 17 C 0.12 1.06 5.06 -4.04 -0.02 1.04 16 18 N -0.71 -6.14 5.28 -61.36 -0.32 -6.47 16 19 C 0.60 6.25 7.82 -12.48 -0.10 6.15 16 20 O -0.51 -6.71 16.91 5.29 0.09 -6.62 16 21 C -0.08 -0.79 7.29 -36.32 -0.26 -1.06 16 22 C -0.15 -1.27 10.26 -38.95 -0.40 -1.67 16 23 C 0.04 0.37 6.94 -82.17 -0.57 -0.20 16 24 C -0.09 -0.58 6.33 -91.77 -0.58 -1.16 16 25 C -0.16 -0.71 10.05 -26.70 -0.27 -0.98 16 26 C -0.16 -0.81 10.24 -26.70 -0.27 -1.09 16 27 N -0.34 -3.62 12.04 33.52 0.40 -3.21 16 28 O 0.12 1.23 11.04 15.55 0.17 1.40 16 29 C -0.11 -1.03 5.20 -26.70 -0.14 -1.17 16 30 C -0.11 -1.30 5.21 -26.70 -0.14 -1.44 16 31 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.38 10.14 6.85 -40.82 -0.28 9.86 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 1.32 7.18 -51.93 -0.37 0.95 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.58 7.18 -51.92 -0.37 0.21 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.41 2.99 7.48 -40.82 -0.31 2.68 16 42 H 0.18 1.24 7.62 -52.49 -0.40 0.84 16 43 H 0.13 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.10 0.42 7.33 -51.93 -0.38 0.04 16 45 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 414.73 15.07 6.25 6.25 Total: -1.00 -32.88 414.73 -10.15 -43.03 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -8.42 Total: 6.34 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -3.70 Total: -11.78 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.48 Total: -56.17 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: 0.26 Total: -5.22 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.88 -10.15 -43.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271783410.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.622 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds