Wall clock time and date at job start Sat Apr 11 2020 08:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00300 * 2 1 4 4 H 1.48501 * 109.46861 * 239.99560 * 3 2 1 5 5 H 1.48495 * 109.46759 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47110 * 119.99640 * 3 2 1 7 7 C 1.38814 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00154 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99947 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00155 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47285 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.46868 * 304.99609 * 11 10 9 13 13 C 1.52999 * 109.47208 * 64.99515 * 11 10 9 14 14 C 1.52994 * 109.46962 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47334 * 299.99893 * 14 13 11 16 16 H 1.08996 * 109.47398 * 300.00032 * 15 14 13 17 17 C 1.53007 * 109.47109 * 179.97438 * 15 14 13 18 18 N 1.46493 * 109.46876 * 65.00705 * 17 15 14 19 19 C 1.34780 * 120.00142 * 180.02562 * 18 17 15 20 20 O 1.21582 * 119.99464 * 359.97438 * 19 18 17 21 21 C 1.47513 * 120.00300 * 179.97438 * 19 18 17 22 22 C 1.36819 * 126.94237 * 180.02562 * 21 19 18 23 23 C 1.41264 * 103.84392 * 179.97438 * 22 21 19 24 24 C 1.50706 * 126.70187 * 179.97438 * 23 22 21 25 25 C 1.52995 * 117.50181 * 343.74690 * 24 23 22 26 26 C 1.52993 * 117.50081 * 275.08456 * 24 23 22 27 27 N 1.30118 * 106.59200 * 0.22173 * 23 22 21 28 28 O 1.20891 * 111.98383 * 359.59668 * 27 23 22 29 29 C 1.53002 * 109.46912 * 60.00495 * 15 14 13 30 30 C 1.52992 * 109.46926 * 184.99729 * 11 10 9 31 31 H 0.97001 * 119.99693 * 0.02562 * 1 2 3 32 32 H 0.96995 * 120.00257 * 359.97438 * 9 7 2 33 33 H 1.08995 * 109.47478 * 59.99111 * 10 9 7 34 34 H 1.09001 * 109.46886 * 299.99214 * 10 9 7 35 35 H 1.09006 * 109.47011 * 300.00099 * 13 11 10 36 36 H 1.09005 * 109.46664 * 60.00002 * 13 11 10 37 37 H 1.09008 * 109.47048 * 179.97438 * 14 13 11 38 38 H 1.09005 * 109.47445 * 60.00461 * 14 13 11 39 39 H 1.08997 * 109.47156 * 305.00288 * 17 15 14 40 40 H 1.08999 * 109.46942 * 185.00165 * 17 15 14 41 41 H 0.97001 * 120.00422 * 359.97438 * 18 17 15 42 42 H 1.07998 * 128.08194 * 359.93061 * 22 21 19 43 43 H 1.08998 * 115.54512 * 129.41453 * 24 23 22 44 44 H 1.09000 * 117.49859 * 0.02562 * 25 24 23 45 45 H 1.08999 * 117.49900 * 145.01759 * 25 24 23 46 46 H 1.08998 * 117.50372 * 214.98309 * 26 24 23 47 47 H 1.09006 * 117.50059 * 359.97438 * 26 24 23 48 48 H 1.08996 * 109.47467 * 59.99579 * 29 15 14 49 49 H 1.09006 * 109.46914 * 180.02562 * 29 15 14 50 50 H 1.08999 * 109.47521 * 59.99983 * 30 11 10 51 51 H 1.08996 * 109.47357 * 299.99587 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6569 0.0017 11 6 1.0637 -4.8198 0.0021 12 1 0.3793 -4.7123 0.8436 13 6 0.2693 -4.8121 -1.3055 14 6 -0.7253 -5.9746 -1.3048 15 6 0.0349 -7.2962 -1.1777 16 1 0.7192 -7.4041 -2.0192 17 6 -0.9599 -8.4587 -1.1764 18 7 -1.6363 -8.5240 -2.4742 19 6 -2.5623 -9.4760 -2.7044 20 8 -2.8358 -10.2807 -1.8350 21 6 -3.2438 -9.5414 -4.0110 22 6 -4.1998 -10.4415 -4.3956 23 6 -4.5086 -10.0611 -5.7206 24 6 -5.5095 -10.7178 -6.6361 25 6 -5.9975 -12.1184 -6.2609 26 6 -5.0408 -11.9314 -7.4410 27 7 -3.7561 -9.0365 -5.9979 28 8 -3.0512 -8.7271 -5.0658 29 6 0.8292 -7.3039 0.1299 30 6 1.8245 -6.1411 0.1289 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3881 0.0005 33 1 2.6840 -3.7142 0.8920 34 1 2.6852 -3.7151 -0.8879 35 1 -0.2727 -3.8706 -1.3958 36 1 0.9538 -4.9195 -2.1470 37 1 -1.2916 -5.9688 -2.2362 38 1 -1.4098 -5.8667 -0.4633 39 1 -1.6980 -8.3044 -0.3893 40 1 -0.4272 -9.3925 -0.9969 41 1 -1.4184 -7.8817 -3.1676 42 1 -4.6198 -11.2536 -3.8208 43 1 -6.2251 -10.0456 -7.1096 44 1 -5.5950 -12.5649 -5.3517 45 1 -7.0340 -12.3679 -6.4880 46 1 -5.4482 -12.0580 -8.4441 47 1 -4.0082 -12.2548 -7.3088 48 1 0.1449 -7.1960 0.9714 49 1 1.3712 -8.2453 0.2203 50 1 2.3904 -6.1466 1.0605 51 1 2.5088 -6.2486 -0.7126 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271783410.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:25:27 Heat of formation + Delta-G solvation = 17.105120 kcal Electronic energy + Delta-G solvation = -29405.334019 eV Core-core repulsion = 25307.228973 eV Total energy + Delta-G solvation = -4098.105046 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.16749 -41.00471 -39.83209 -38.58541 -37.01151 -35.70331 -34.42795 -33.81717 -33.05903 -31.62994 -31.53064 -28.26879 -26.19660 -25.78120 -24.83635 -24.05273 -23.53519 -23.02340 -22.79371 -21.58941 -21.05408 -20.55645 -19.44858 -19.12824 -18.92543 -17.39982 -17.25334 -16.68115 -16.60886 -16.48083 -16.01629 -15.59355 -15.49076 -15.27456 -15.18287 -14.99105 -14.76948 -14.57452 -14.51514 -13.95198 -13.48145 -13.23597 -13.11365 -12.98951 -12.96020 -12.81643 -12.56703 -12.47383 -12.43378 -12.23174 -12.12851 -11.92165 -11.86572 -11.75268 -11.59957 -11.42731 -11.29020 -11.01426 -10.99667 -10.88804 -10.79319 -10.75184 -10.22339 -8.97299 -7.94513 -5.22607 -0.35763 0.87691 1.44967 1.46445 1.49712 1.55899 1.81338 2.10661 2.56515 2.61114 2.97189 3.38584 3.42202 3.64620 3.75686 3.79484 3.82746 3.86734 3.93128 4.00891 4.02151 4.18501 4.22900 4.34229 4.38590 4.44574 4.58188 4.61303 4.65682 4.69259 4.70957 4.78675 4.80164 4.85140 4.96664 4.96912 5.04327 5.06071 5.12534 5.19645 5.19985 5.24661 5.27393 5.35193 5.37888 5.46549 5.49675 5.62874 5.70183 6.18726 6.28095 6.80773 6.96994 7.34158 8.12620 8.35578 9.28867 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015967 B = 0.001683 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.191287 B =16636.852582 C =17959.201535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.974 3.026 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.278 1.278 7 C -0.248 4.248 8 H 0.073 0.927 9 N -0.744 5.744 10 C 0.153 3.847 11 C -0.085 4.085 12 H 0.055 0.945 13 C -0.105 4.105 14 C -0.109 4.109 15 C -0.087 4.087 16 H 0.091 0.909 17 C 0.127 3.873 18 N -0.700 5.700 19 C 0.608 3.392 20 O -0.543 6.543 21 C -0.091 4.091 22 C -0.144 4.144 23 C 0.043 3.957 24 C -0.112 4.112 25 C -0.147 4.147 26 C -0.160 4.160 27 N -0.363 5.363 28 O 0.115 5.885 29 C -0.104 4.104 30 C -0.103 4.103 31 H 0.251 0.749 32 H 0.374 0.626 33 H 0.014 0.986 34 H 0.017 0.983 35 H 0.035 0.965 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.417 0.583 42 H 0.200 0.800 43 H 0.131 0.869 44 H 0.105 0.895 45 H 0.125 0.875 46 H 0.119 0.881 47 H 0.090 0.910 48 H 0.064 0.936 49 H 0.086 0.914 50 H 0.066 0.934 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.559 -29.613 -11.131 32.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.380 4.380 8 H 0.091 0.909 9 N -0.387 5.387 10 C 0.026 3.974 11 C -0.104 4.104 12 H 0.073 0.927 13 C -0.142 4.142 14 C -0.146 4.146 15 C -0.106 4.106 16 H 0.109 0.891 17 C 0.004 3.996 18 N -0.351 5.351 19 C 0.392 3.608 20 O -0.422 6.422 21 C -0.157 4.157 22 C -0.166 4.166 23 C -0.114 4.114 24 C -0.131 4.131 25 C -0.185 4.185 26 C -0.198 4.198 27 N -0.064 5.064 28 O 0.043 5.957 29 C -0.142 4.142 30 C -0.141 4.141 31 H 0.059 0.941 32 H 0.206 0.794 33 H 0.032 0.968 34 H 0.035 0.965 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.254 0.746 42 H 0.217 0.783 43 H 0.148 0.852 44 H 0.123 0.877 45 H 0.143 0.857 46 H 0.138 0.862 47 H 0.109 0.891 48 H 0.083 0.917 49 H 0.105 0.895 50 H 0.085 0.915 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.410 -29.295 -11.563 32.598 hybrid contribution -0.103 1.432 0.305 1.468 sum -8.513 -27.863 -11.258 31.234 Atomic orbital electron populations 1.69811 1.06595 1.26079 1.59543 1.25566 0.96413 1.01092 1.03769 0.85208 0.77206 0.79140 0.78192 1.20402 1.22109 1.20383 1.19630 0.91475 0.85624 1.41245 0.90875 1.42598 1.05615 1.01197 1.89266 1.20903 0.94122 0.85225 0.97114 1.21238 0.96755 0.94529 0.97889 0.92654 1.21421 0.97931 0.97769 0.97106 1.21581 0.97360 0.93674 1.02033 1.21349 0.96449 0.92603 1.00212 0.89072 1.21590 0.95068 0.99460 0.83472 1.45935 1.39227 1.31824 1.18138 1.16502 0.79417 0.81701 0.83205 1.90867 1.65309 1.41892 1.44086 1.24223 1.03263 0.96319 0.91862 1.23069 0.97137 1.01614 0.94816 1.23112 0.99055 0.94507 0.94707 1.20309 0.99084 0.91811 1.01896 1.23209 1.01323 0.94176 0.99756 1.23135 1.00531 0.98209 0.97886 1.73716 1.06233 1.16803 1.09606 1.84997 1.48608 1.45689 1.16444 1.21464 0.97658 0.98635 0.96398 1.21461 0.97737 0.92456 1.02444 0.94051 0.79410 0.96779 0.96477 0.94604 0.92019 0.91348 0.92398 0.91232 0.89873 0.74586 0.78326 0.85165 0.87696 0.85709 0.86228 0.89098 0.91705 0.89497 0.91525 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.24 13.06 21.65 0.28 -59.96 16 2 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 3 Si 0.97 46.77 29.55 68.60 2.03 48.80 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.25 -14.17 9.99 84.03 0.84 -13.33 16 8 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -38.59 5.33 -343.44 -1.83 -40.42 16 10 C 0.15 6.14 5.65 86.38 0.49 6.63 16 11 C -0.09 -2.61 2.22 -10.80 -0.02 -2.63 16 12 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 13 C -0.10 -3.05 5.08 30.59 0.16 -2.90 16 14 C -0.11 -2.32 5.07 30.59 0.16 -2.16 16 15 C -0.09 -1.38 2.23 -10.79 -0.02 -1.41 16 16 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 17 C 0.13 1.94 5.06 86.38 0.44 2.38 16 18 N -0.70 -11.08 5.28 -466.30 -2.46 -13.54 16 19 C 0.61 11.97 7.82 86.69 0.68 12.65 16 20 O -0.54 -13.66 16.91 -3.98 -0.07 -13.72 16 21 C -0.09 -1.69 7.29 24.38 0.18 -1.51 16 22 C -0.14 -2.37 10.26 22.68 0.23 -2.13 16 23 C 0.04 0.75 6.94 43.56 0.30 1.05 16 24 C -0.11 -1.32 6.33 -11.54 -0.07 -1.39 16 25 C -0.15 -0.99 10.05 30.62 0.31 -0.68 16 26 C -0.16 -1.36 10.24 30.62 0.31 -1.05 16 27 N -0.36 -7.75 12.04 -48.87 -0.59 -8.34 16 28 O 0.12 2.30 11.04 65.83 0.73 3.03 16 29 C -0.10 -1.71 5.20 30.61 0.16 -1.55 16 30 C -0.10 -2.25 5.21 30.61 0.16 -2.09 16 31 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 32 H 0.37 20.57 6.85 -92.71 -0.64 19.94 16 33 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.04 1.32 7.18 -2.38 -0.02 1.30 16 36 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.07 1.31 7.18 -2.38 -0.02 1.30 16 38 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.42 5.45 7.48 -92.71 -0.69 4.76 16 42 H 0.20 2.43 7.62 -2.91 -0.02 2.41 16 43 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.10 0.64 7.33 -2.39 -0.02 0.62 16 45 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 48 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 50 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -71.87 414.73 2.45 -69.41 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: -0.39 Total: 28.86 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 4.75 Total: -14.11 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -4.60 Total: -122.26 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.66 Total: -10.70 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -71.87 2.45 -69.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271783410.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.517 kcal (2) G-P(sol) polarization free energy of solvation -71.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds