Wall clock time and date at job start Sat Apr 11 2020 08:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86793 * 120.00147 * 2 1 4 4 H 1.48493 * 109.47489 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47053 * 300.00307 * 3 2 1 6 6 H 1.48504 * 109.47074 * 60.00053 * 3 2 1 7 7 C 1.38946 * 119.99656 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99691 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00640 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00567 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99524 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00141 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47059 * 179.97438 * 12 10 9 14 14 C 1.47633 * 111.00043 * 310.24796 * 13 12 10 15 15 C 1.53899 * 106.80114 * 235.26273 * 14 13 12 16 16 C 1.54185 * 102.52817 * 337.02970 * 15 14 13 17 17 H 1.09002 * 109.49487 * 283.22551 * 16 15 14 18 18 C 1.50939 * 112.77508 * 161.00815 * 16 15 14 19 19 N 1.46715 * 111.13442 * 289.86328 * 18 16 15 20 20 C 1.34767 * 121.35819 * 127.79241 * 19 18 16 21 21 O 1.21284 * 120.00457 * 0.02562 * 20 19 18 22 22 C 1.50706 * 119.99879 * 179.97438 * 20 19 18 23 23 C 1.54637 * 111.03643 * 180.02562 * 22 20 19 24 24 C 1.51104 * 104.82203 * 266.65955 * 23 22 20 25 25 C 1.30525 * 111.10650 * 343.50481 * 24 23 22 26 26 C 1.51094 * 111.10287 * 0.02562 * 25 24 23 27 27 C 1.47216 * 117.28062 * 308.06743 * 19 18 16 28 28 C 1.52813 * 107.17450 * 59.29811 * 27 19 18 29 29 C 1.49041 * 110.99968 * 189.99594 * 13 12 10 30 30 H 1.08999 * 112.47339 * 270.21969 * 29 13 12 31 31 H 0.96997 * 120.00329 * 359.97438 * 1 2 3 32 32 H 0.97006 * 119.99342 * 359.97438 * 9 7 2 33 33 H 1.08998 * 109.47269 * 59.99564 * 12 10 9 34 34 H 1.08999 * 109.46604 * 299.99878 * 12 10 9 35 35 H 1.08997 * 109.89149 * 353.81805 * 14 13 12 36 36 H 1.08995 * 109.89432 * 114.86461 * 14 13 12 37 37 H 1.09002 * 110.07302 * 219.01819 * 15 14 13 38 38 H 1.09003 * 111.29526 * 95.60344 * 15 14 13 39 39 H 1.09001 * 109.14892 * 169.43584 * 18 16 15 40 40 H 1.09007 * 109.14608 * 50.28462 * 18 16 15 41 41 H 1.08997 * 110.94752 * 303.99173 * 22 20 19 42 42 H 1.09002 * 110.38719 * 147.79034 * 23 22 20 43 43 H 1.09000 * 110.38599 * 25.52454 * 23 22 20 44 44 H 1.08001 * 124.43953 * 163.48841 * 24 23 22 45 45 H 1.07999 * 124.44678 * 179.97438 * 25 24 23 46 46 H 1.08999 * 110.38926 * 135.24917 * 26 25 24 47 47 H 1.09008 * 110.38956 * 257.50891 * 26 25 24 48 48 H 1.09003 * 109.79978 * 177.36831 * 27 19 18 49 49 H 1.09000 * 109.79991 * 298.22997 * 27 19 18 50 50 H 1.08996 * 108.49587 * 180.93719 * 28 27 19 51 51 H 1.08993 * 110.73660 * 61.14820 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2436 -4.8630 0.0000 13 7 2.1982 -5.9795 -0.0005 14 6 3.2188 -5.8026 -1.0524 15 6 3.1856 -7.0715 -1.9226 16 6 2.5705 -8.1151 -0.9687 17 1 3.3246 -8.4429 -0.2532 18 6 2.0107 -9.3133 -1.6961 19 7 0.8024 -8.9583 -2.4487 20 6 0.6796 -9.2533 -3.7579 21 8 1.5789 -9.8242 -4.3379 22 6 -0.5756 -8.8747 -4.5012 23 6 -0.4960 -9.3099 -5.9829 24 6 0.0392 -8.1000 -6.7129 25 6 -0.0702 -7.0239 -5.9824 26 6 -0.6959 -7.3368 -4.6432 27 6 -0.2679 -8.2611 -1.7168 28 6 0.3284 -6.9633 -1.1735 29 6 1.5037 -7.2759 -0.2426 30 1 1.1733 -7.7504 0.6813 31 1 -0.4850 0.8400 0.0004 32 1 0.3532 -2.3906 0.0005 33 1 0.6172 -4.9205 -0.8902 34 1 0.6167 -4.9208 0.8897 35 1 2.9724 -4.9363 -1.6663 36 1 4.2003 -5.6679 -0.5980 37 1 4.1983 -7.3559 -2.2083 38 1 2.5574 -6.9318 -2.8024 39 1 1.7652 -10.0892 -0.9710 40 1 2.7625 -9.6957 -2.3867 41 1 -1.4570 -9.2953 -4.0170 42 1 -1.4864 -9.5711 -6.3557 43 1 0.1856 -10.1532 -6.0948 44 1 0.4574 -8.1229 -7.7084 45 1 0.2459 -6.0393 -6.2940 46 1 -0.1495 -6.8376 -3.8429 47 1 -1.7430 -7.0340 -4.6332 48 1 -1.0824 -8.0161 -2.3985 49 1 -0.6380 -8.8953 -0.9112 50 1 -0.4433 -6.4366 -0.6121 51 1 0.6753 -6.3274 -1.9879 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272206473.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:25:39 Heat of formation + Delta-G solvation = -47.899154 kcal Electronic energy + Delta-G solvation = -32258.584174 eV Core-core repulsion = 28157.660331 eV Total energy + Delta-G solvation = -4100.923843 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.19849 -40.96129 -39.69021 -38.34694 -36.81092 -35.89431 -34.12533 -33.23742 -32.04020 -30.97722 -29.75221 -29.01750 -28.37417 -26.50635 -25.54558 -24.21866 -23.07498 -22.25396 -20.75814 -20.70730 -19.77067 -19.72338 -19.39007 -18.37484 -17.82029 -17.35010 -17.02302 -16.69769 -16.61143 -16.38385 -16.14772 -15.64210 -15.55594 -15.24082 -14.66883 -14.58648 -14.36531 -13.99188 -13.83170 -13.64816 -13.56137 -13.44908 -13.36459 -13.27030 -13.07085 -12.92639 -12.70680 -12.67866 -12.44823 -12.41454 -12.23269 -12.14149 -12.07323 -12.05368 -11.82945 -11.52235 -11.40828 -11.30076 -10.78314 -10.22667 -9.99528 -9.83215 -9.65326 -9.12993 -8.47650 -5.95629 1.33675 1.34805 1.40400 1.53935 1.60729 2.01328 2.05075 2.27811 2.82188 3.19701 3.25673 3.44075 3.54972 3.62421 3.64370 3.70991 3.84194 3.99939 4.12160 4.23088 4.26900 4.27979 4.32934 4.43330 4.47686 4.51268 4.57929 4.61810 4.63643 4.72387 4.74015 4.76708 4.78783 4.81022 4.85667 4.90595 4.98064 4.98986 5.03771 5.14751 5.18501 5.27845 5.38466 5.40420 5.56123 5.63101 5.89702 5.92171 6.01289 6.14344 6.43327 6.60412 7.12775 7.18322 7.55896 8.12107 8.69928 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013337 B = 0.002875 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.945255 B = 9736.856013 C =10868.819756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 0.989 3.011 4 H -0.276 1.276 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.332 4.332 8 H 0.075 0.925 9 N -0.572 5.572 10 C 0.435 3.565 11 O -0.620 6.620 12 C 0.046 3.954 13 N -0.522 5.522 14 C 0.076 3.924 15 C -0.129 4.129 16 C -0.094 4.094 17 H 0.098 0.902 18 C 0.128 3.872 19 N -0.607 5.607 20 C 0.522 3.478 21 O -0.584 6.584 22 C -0.112 4.112 23 C -0.087 4.087 24 C -0.167 4.167 25 C -0.192 4.192 26 C -0.089 4.089 27 C 0.109 3.891 28 C -0.165 4.165 29 C 0.083 3.917 30 H 0.122 0.878 31 H 0.278 0.722 32 H 0.397 0.603 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.021 0.979 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.140 0.860 42 H 0.106 0.894 43 H 0.069 0.931 44 H 0.127 0.873 45 H 0.121 0.879 46 H 0.067 0.933 47 H 0.111 0.889 48 H 0.105 0.895 49 H 0.109 0.891 50 H 0.099 0.901 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.285 -20.711 -6.164 23.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.210 4.210 3 Si 0.813 3.187 4 H -0.201 1.201 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.461 4.461 8 H 0.093 0.907 9 N -0.210 5.210 10 C 0.223 3.777 11 O -0.506 6.506 12 C -0.085 4.085 13 N -0.247 5.247 14 C -0.052 4.052 15 C -0.167 4.167 16 C -0.114 4.114 17 H 0.116 0.884 18 C 0.005 3.995 19 N -0.339 5.339 20 C 0.311 3.689 21 O -0.464 6.464 22 C -0.133 4.133 23 C -0.124 4.124 24 C -0.185 4.185 25 C -0.210 4.210 26 C -0.126 4.126 27 C -0.013 4.013 28 C -0.204 4.204 29 C -0.024 4.024 30 H 0.140 0.860 31 H 0.087 0.913 32 H 0.231 0.769 33 H 0.098 0.902 34 H 0.130 0.870 35 H 0.039 0.961 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.157 0.843 42 H 0.124 0.876 43 H 0.087 0.913 44 H 0.145 0.855 45 H 0.139 0.861 46 H 0.086 0.914 47 H 0.129 0.871 48 H 0.123 0.877 49 H 0.127 0.873 50 H 0.117 0.883 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.901 -20.834 -5.947 23.062 hybrid contribution 0.204 1.592 -0.919 1.849 sum -7.697 -19.242 -6.866 21.832 Atomic orbital electron populations 1.69660 1.06657 1.29188 1.50374 1.25965 0.96539 1.02177 0.96354 0.84928 0.77962 0.77403 0.78397 1.20116 1.19584 1.19476 1.19638 0.92530 0.84103 1.49851 0.90712 1.41906 1.09284 1.04613 1.65165 1.20920 0.88363 0.86299 0.82149 1.90513 1.15892 1.87820 1.56387 1.22132 0.94680 0.87861 1.03822 1.63859 1.12553 1.01476 1.46780 1.22328 0.96262 0.95494 0.91151 1.22558 1.01039 0.95425 0.97692 1.21761 0.98052 0.94526 0.97059 0.88380 1.20878 0.87389 0.95843 0.95379 1.48185 1.18631 1.58133 1.08922 1.20885 0.89085 0.77461 0.81424 1.90653 1.43453 1.44351 1.67922 1.22298 0.96421 0.97804 0.96776 1.21320 1.02305 0.97189 0.91570 1.23443 0.99708 0.95211 1.00127 1.23425 1.01319 0.99118 0.97090 1.21524 1.02792 0.92596 0.95682 1.22071 0.89282 0.92130 0.97795 1.22657 0.99380 0.98537 0.99834 1.22929 0.92492 0.88550 0.98450 0.85983 0.91286 0.76942 0.90238 0.86993 0.96053 0.92815 0.91329 0.92863 0.88652 0.90955 0.84254 0.87628 0.91269 0.85517 0.86125 0.91441 0.87065 0.87663 0.87341 0.88313 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.85 13.05 21.66 0.28 -48.56 16 2 C -0.01 -0.55 5.50 84.93 0.47 -0.09 16 3 Si 0.99 43.00 29.55 68.60 2.03 45.03 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 7 C -0.33 -18.84 9.68 84.04 0.81 -18.02 16 8 H 0.07 4.59 7.16 -2.91 -0.02 4.57 16 9 N -0.57 -29.10 5.29 -306.98 -1.62 -30.72 16 10 C 0.43 20.58 7.06 87.66 0.62 21.19 16 11 O -0.62 -34.31 13.42 -3.07 -0.04 -34.35 16 12 C 0.05 1.53 4.63 85.56 0.40 1.92 16 13 N -0.52 -16.34 5.20 -864.11 -4.50 -20.84 16 14 C 0.08 2.70 4.73 86.47 0.41 3.11 16 15 C -0.13 -3.57 5.78 31.30 0.18 -3.39 16 16 C -0.09 -1.96 2.95 -10.75 -0.03 -1.99 16 17 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 18 C 0.13 2.32 5.85 85.67 0.50 2.82 16 19 N -0.61 -10.51 2.77 -823.68 -2.29 -12.80 16 20 C 0.52 11.25 7.04 87.66 0.62 11.87 16 21 O -0.58 -17.66 15.00 -3.04 -0.05 -17.70 16 22 C -0.11 -1.69 2.52 -10.32 -0.03 -1.72 16 23 C -0.09 -1.44 6.14 30.53 0.19 -1.25 16 24 C -0.17 -3.21 10.78 26.26 0.28 -2.92 16 25 C -0.19 -3.78 10.78 26.26 0.28 -3.50 16 26 C -0.09 -1.39 5.19 30.63 0.16 -1.23 16 27 C 0.11 1.24 5.56 86.18 0.48 1.72 16 28 C -0.17 -2.78 3.40 30.58 0.10 -2.68 16 29 C 0.08 1.69 3.71 44.87 0.17 1.86 16 30 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 32 H 0.40 18.94 7.90 -92.70 -0.73 18.21 16 33 H 0.08 2.32 5.21 -2.39 -0.01 2.31 16 34 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 35 H 0.02 0.89 6.31 -2.39 -0.02 0.88 16 36 H 0.05 2.20 7.86 -2.39 -0.02 2.18 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.05 1.58 7.30 -2.39 -0.02 1.56 16 39 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 1.65 7.04 -2.38 -0.02 1.63 16 41 H 0.14 1.14 7.76 -2.39 -0.02 1.13 16 42 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.07 1.44 7.01 -2.39 -0.02 1.42 16 44 H 0.13 2.24 8.06 -2.91 -0.02 2.21 16 45 H 0.12 2.42 8.06 -2.91 -0.02 2.39 16 46 H 0.07 1.22 5.63 -2.39 -0.01 1.21 16 47 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 48 H 0.11 0.85 5.09 -2.39 -0.01 0.84 16 49 H 0.11 0.70 8.14 -2.39 -0.02 0.69 16 50 H 0.10 1.40 7.05 -2.39 -0.02 1.38 16 51 H 0.05 1.16 4.90 -2.39 -0.01 1.15 16 Total: -1.00 -75.10 382.68 -0.35 -75.45 By element: Atomic # 1 Polarization: 36.57 SS G_CDS: 0.23 Total: 36.79 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 5.61 Total: 7.70 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -8.12 Total: -112.92 kcal Atomic # 8 Polarization: -51.97 SS G_CDS: -0.09 Total: -52.05 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -75.10 -0.35 -75.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272206473.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.553 kcal (2) G-P(sol) polarization free energy of solvation -75.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds