Wall clock time and date at job start Sat Apr 11 2020 08:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99573 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99431 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99772 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46902 * 109.47027 * 179.72353 * 12 10 9 14 14 C 1.48568 * 110.99481 * 288.95933 * 13 12 10 15 15 C 1.55295 * 107.00090 * 233.88503 * 14 13 12 16 16 C 1.53713 * 101.91452 * 337.42381 * 15 14 13 17 17 H 1.08995 * 111.93785 * 280.92742 * 16 15 14 18 18 C 1.52701 * 114.29076 * 152.53252 * 16 15 14 19 19 N 1.47727 * 105.87029 * 189.78355 * 18 16 15 20 20 C 1.34770 * 119.68894 * 232.38043 * 19 18 16 21 21 O 1.21289 * 119.99798 * 0.02595 * 20 19 18 22 22 C 1.50694 * 120.00266 * 180.02562 * 20 19 18 23 23 C 1.54638 * 111.03706 * 292.02300 * 22 20 19 24 24 C 1.51101 * 104.72360 * 217.33312 * 23 22 20 25 25 C 1.30518 * 111.10819 * 16.44281 * 24 23 22 26 26 C 1.51105 * 111.10338 * 359.97438 * 25 24 23 27 27 C 1.46600 * 120.62715 * 52.40738 * 19 18 16 28 28 C 1.53954 * 110.58301 * 312.16109 * 27 19 18 29 29 C 1.45908 * 110.99664 * 169.99863 * 13 12 10 30 30 H 1.08997 * 109.30642 * 34.97149 * 29 13 12 31 31 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 34 34 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 35 35 H 1.08998 * 109.93315 * 353.22219 * 14 13 12 36 36 H 1.09001 * 109.92763 * 114.55226 * 14 13 12 37 37 H 1.09006 * 110.93726 * 219.26753 * 15 14 13 38 38 H 1.09001 * 110.96793 * 95.59839 * 15 14 13 39 39 H 1.09003 * 110.01903 * 70.88960 * 18 16 15 40 40 H 1.09002 * 110.69161 * 309.04232 * 18 16 15 41 41 H 1.08999 * 110.91353 * 56.03382 * 22 20 19 42 42 H 1.08999 * 110.38806 * 336.14989 * 23 22 20 43 43 H 1.09002 * 110.38208 * 98.52299 * 23 22 20 44 44 H 1.08002 * 124.44180 * 196.41386 * 24 23 22 45 45 H 1.07995 * 124.44940 * 180.02562 * 25 24 23 46 46 H 1.08997 * 110.38932 * 224.75478 * 26 25 24 47 47 H 1.09001 * 110.38229 * 102.38275 * 26 25 24 48 48 H 1.09002 * 109.24915 * 191.88159 * 27 19 18 49 49 H 1.08997 * 109.26046 * 72.45243 * 27 19 18 50 50 H 1.08997 * 109.88409 * 291.60506 * 28 27 19 51 51 H 1.09003 * 109.87857 * 170.52575 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 7 2.1985 -5.9795 -0.0089 14 6 2.8879 -6.0855 -1.3206 15 6 2.6900 -7.5421 -1.8212 16 6 2.4076 -8.2928 -0.5099 17 1 3.3219 -8.4980 0.0468 18 6 1.5509 -9.5459 -0.6754 19 7 1.1972 -9.9770 0.6926 20 6 1.4323 -11.2481 1.0737 21 8 1.9325 -12.0320 0.2950 22 6 1.0737 -11.6955 2.4673 23 6 1.9761 -11.0105 3.5197 24 6 2.2241 -12.0742 4.5638 25 6 1.9268 -13.2600 4.1066 26 6 1.4303 -13.1848 2.6814 27 6 0.5922 -9.0353 1.6394 28 6 1.3742 -7.7093 1.6583 29 6 1.5185 -7.2497 0.2216 30 1 0.5356 -7.2228 -0.2488 31 1 -0.4850 0.8400 -0.0004 32 1 0.3534 -2.3906 0.0005 33 1 0.6165 -4.9246 0.8846 34 1 0.6178 -4.9168 -0.8953 35 1 2.4464 -5.3856 -2.0301 36 1 3.9507 -5.8754 -1.1998 37 1 3.5961 -7.9169 -2.2974 38 1 1.8394 -7.6092 -2.4996 39 1 2.1237 -10.3260 -1.1769 40 1 0.6473 -9.3226 -1.2426 41 1 0.0197 -11.5120 2.6758 42 1 2.9165 -10.6963 3.0668 43 1 1.4627 -10.1566 3.9620 44 1 2.5986 -11.8789 5.5578 45 1 2.0222 -14.1746 4.6728 46 1 0.5462 -13.8094 2.5538 47 1 2.2151 -13.4902 1.9894 48 1 0.6026 -9.4729 2.6377 49 1 -0.4386 -8.8405 1.3437 50 1 2.3591 -7.8659 2.0981 51 1 0.8251 -6.9633 2.2328 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272206475.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:25:48 Heat of formation + Delta-G solvation = -35.328920 kcal Electronic energy + Delta-G solvation = -31118.737928 eV Core-core repulsion = 27018.359171 eV Total energy + Delta-G solvation = -4100.378757 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.12863 -39.75864 -38.13641 -37.61589 -36.02136 -33.91531 -32.79212 -31.70238 -31.20070 -30.26225 -28.81104 -28.33798 -26.86461 -24.93304 -24.02867 -23.07981 -22.05752 -20.90424 -20.43284 -19.21792 -19.03320 -18.93131 -17.84259 -17.46353 -16.63221 -16.11390 -16.01735 -15.67465 -15.39895 -15.08368 -14.70866 -14.53848 -14.07036 -13.92012 -13.66975 -13.46746 -13.32471 -13.19699 -12.93707 -12.75210 -12.58676 -12.47801 -12.13369 -12.09862 -12.01072 -11.66590 -11.59549 -11.49457 -11.40933 -11.24189 -11.14005 -11.11888 -10.93527 -10.63143 -10.39602 -10.29210 -10.20194 -9.95714 -9.49269 -9.24246 -8.93716 -8.45627 -7.96409 -7.90888 -6.41207 -3.81843 1.90467 2.34716 2.66194 3.17687 3.26235 3.32225 3.85433 3.92917 4.04670 4.16327 4.20740 4.33273 4.43398 4.51964 4.70294 4.74984 4.85857 4.90144 4.90912 5.08930 5.14843 5.19046 5.20213 5.25583 5.28670 5.35297 5.37374 5.39363 5.47318 5.52873 5.55665 5.62036 5.64012 5.70600 5.75415 5.79718 5.85171 5.89723 5.96408 6.09745 6.15901 6.22096 6.28132 6.33770 6.45747 6.50961 7.09882 7.19291 7.31636 7.55607 7.90269 8.07165 8.62965 9.19212 9.55607 10.07877 10.76685 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021469 B = 0.002074 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.874179 B =13495.883343 C =14156.553675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.297 4.297 8 H 0.102 0.898 9 N -0.567 5.567 10 C 0.445 3.555 11 O -0.576 6.576 12 C 0.042 3.958 13 N -0.495 5.495 14 C 0.058 3.942 15 C -0.134 4.134 16 C -0.109 4.109 17 H 0.093 0.907 18 C 0.124 3.876 19 N -0.609 5.609 20 C 0.524 3.476 21 O -0.542 6.542 22 C -0.117 4.117 23 C -0.091 4.091 24 C -0.169 4.169 25 C -0.163 4.163 26 C -0.088 4.088 27 C 0.101 3.899 28 C -0.117 4.117 29 C 0.069 3.931 30 H 0.045 0.955 31 H 0.271 0.729 32 H 0.391 0.609 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.128 0.872 45 H 0.126 0.874 46 H 0.074 0.926 47 H 0.094 0.906 48 H 0.093 0.907 49 H 0.067 0.933 50 H 0.078 0.922 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.881 -23.683 4.940 24.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.426 4.426 8 H 0.120 0.880 9 N -0.204 5.204 10 C 0.230 3.770 11 O -0.459 6.459 12 C -0.090 4.090 13 N -0.218 5.218 14 C -0.069 4.069 15 C -0.173 4.173 16 C -0.128 4.128 17 H 0.112 0.888 18 C 0.002 3.998 19 N -0.342 5.342 20 C 0.312 3.688 21 O -0.419 6.419 22 C -0.139 4.139 23 C -0.128 4.128 24 C -0.187 4.187 25 C -0.181 4.181 26 C -0.125 4.125 27 C -0.022 4.022 28 C -0.155 4.155 29 C -0.040 4.040 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.224 0.776 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.123 0.877 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.146 0.854 45 H 0.144 0.856 46 H 0.092 0.908 47 H 0.113 0.887 48 H 0.111 0.889 49 H 0.085 0.915 50 H 0.096 0.904 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.577 -23.792 4.917 24.346 hybrid contribution -1.004 0.988 -0.516 1.500 sum -2.581 -22.803 4.400 23.367 Atomic orbital electron populations 1.69609 1.05908 1.28083 1.50887 1.25248 0.95636 0.99676 0.97469 0.85868 0.79254 0.80885 0.78350 1.20469 1.20950 1.19426 1.19683 0.93325 0.82223 1.47409 0.87976 1.41869 1.09127 1.04596 1.64852 1.19740 0.88437 0.84481 0.84358 1.90521 1.13642 1.86990 1.54724 1.22075 0.93936 0.91675 1.01325 1.62936 1.26791 1.00814 1.31301 1.23092 1.01146 0.94075 0.88589 1.22675 1.02139 0.96157 0.96347 1.22593 0.98928 0.93903 0.97408 0.88844 1.21724 0.98764 0.96706 0.82627 1.48255 1.62047 1.10152 1.13753 1.20443 0.77632 0.81568 0.89176 1.90677 1.43922 1.52803 1.54491 1.22185 1.01657 0.97711 0.92301 1.21434 0.99664 0.97817 0.93866 1.23227 1.01469 0.94848 0.99108 1.23307 1.00336 0.98169 0.96274 1.21292 1.02125 0.93950 0.95143 1.21993 0.96628 0.90025 0.93528 1.21679 1.01681 0.95342 0.96845 1.22079 0.96169 0.89695 0.96056 0.93716 0.91933 0.77583 0.89617 0.93374 0.92694 0.89684 0.90543 0.91385 0.88660 0.91089 0.87709 0.90017 0.89909 0.85443 0.85572 0.90781 0.88739 0.88888 0.91458 0.90371 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.57 -14.25 5.29 -10.96 -0.06 -14.31 16 10 C 0.44 10.37 7.52 -10.98 -0.08 10.29 16 11 O -0.58 -15.47 15.19 5.55 0.08 -15.38 16 12 C 0.04 0.72 5.03 -4.97 -0.03 0.70 16 13 N -0.49 -7.91 4.78 -225.32 -1.08 -8.99 16 14 C 0.06 0.90 5.73 -1.68 -0.01 0.89 16 15 C -0.13 -1.53 6.51 -25.14 -0.16 -1.70 16 16 C -0.11 -1.21 2.87 -89.15 -0.26 -1.46 16 17 H 0.09 1.16 8.08 -51.93 -0.42 0.74 16 18 C 0.12 1.25 5.96 -3.52 -0.02 1.23 16 19 N -0.61 -5.86 2.99 -172.20 -0.51 -6.38 16 20 C 0.52 5.61 6.95 -10.99 -0.08 5.53 16 21 O -0.54 -7.66 14.87 5.55 0.08 -7.58 16 22 C -0.12 -0.94 2.50 -90.06 -0.23 -1.16 16 23 C -0.09 -0.66 5.39 -26.83 -0.14 -0.80 16 24 C -0.17 -1.18 10.77 -35.69 -0.38 -1.56 16 25 C -0.16 -1.16 10.78 -35.69 -0.38 -1.55 16 26 C -0.09 -0.72 6.18 -26.83 -0.17 -0.89 16 27 C 0.10 0.79 5.99 -3.49 -0.02 0.77 16 28 C -0.12 -1.16 6.05 -26.98 -0.16 -1.33 16 29 C 0.07 0.83 1.74 -67.74 -0.12 0.71 16 30 H 0.04 0.52 7.60 -51.93 -0.39 0.13 16 31 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.39 9.39 7.90 -40.82 -0.32 9.06 16 33 H 0.09 1.34 8.08 -51.93 -0.42 0.92 16 34 H 0.05 0.77 7.91 -51.93 -0.41 0.36 16 35 H 0.05 0.91 7.40 -51.93 -0.38 0.52 16 36 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.10 1.06 7.00 -51.93 -0.36 0.70 16 40 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 41 H 0.10 0.66 7.84 -51.93 -0.41 0.26 16 42 H 0.08 0.70 7.88 -51.93 -0.41 0.29 16 43 H 0.08 0.48 6.61 -51.93 -0.34 0.14 16 44 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 45 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.09 0.96 6.96 -51.93 -0.36 0.60 16 48 H 0.09 0.56 3.92 -51.93 -0.20 0.36 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 51 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 395.90 15.07 5.97 5.97 Total: -1.00 -32.81 395.90 -10.47 -43.28 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -8.17 Total: 9.35 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -2.48 Total: 1.76 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.93 Total: -53.39 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: 0.17 Total: -22.96 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.81 -10.47 -43.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272206475.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.952 kcal (2) G-P(sol) polarization free energy of solvation -32.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds