Wall clock time and date at job start Sat Apr 11 2020 08:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99573 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99431 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99772 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46902 * 109.47027 * 179.72353 * 12 10 9 14 14 C 1.48568 * 110.99481 * 288.95933 * 13 12 10 15 15 C 1.55295 * 107.00090 * 233.88503 * 14 13 12 16 16 C 1.53713 * 101.91452 * 337.42381 * 15 14 13 17 17 H 1.08995 * 111.93785 * 280.92742 * 16 15 14 18 18 C 1.52701 * 114.29076 * 152.53252 * 16 15 14 19 19 N 1.47727 * 105.87029 * 189.78355 * 18 16 15 20 20 C 1.34770 * 119.68894 * 232.38043 * 19 18 16 21 21 O 1.21289 * 119.99798 * 0.02595 * 20 19 18 22 22 C 1.50694 * 120.00266 * 180.02562 * 20 19 18 23 23 C 1.54638 * 111.03706 * 292.02300 * 22 20 19 24 24 C 1.51101 * 104.72360 * 217.33312 * 23 22 20 25 25 C 1.30518 * 111.10819 * 16.44281 * 24 23 22 26 26 C 1.51105 * 111.10338 * 359.97438 * 25 24 23 27 27 C 1.46600 * 120.62715 * 52.40738 * 19 18 16 28 28 C 1.53954 * 110.58301 * 312.16109 * 27 19 18 29 29 C 1.45908 * 110.99664 * 169.99863 * 13 12 10 30 30 H 1.08997 * 109.30642 * 34.97149 * 29 13 12 31 31 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 34 34 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 35 35 H 1.08998 * 109.93315 * 353.22219 * 14 13 12 36 36 H 1.09001 * 109.92763 * 114.55226 * 14 13 12 37 37 H 1.09006 * 110.93726 * 219.26753 * 15 14 13 38 38 H 1.09001 * 110.96793 * 95.59839 * 15 14 13 39 39 H 1.09003 * 110.01903 * 70.88960 * 18 16 15 40 40 H 1.09002 * 110.69161 * 309.04232 * 18 16 15 41 41 H 1.08999 * 110.91353 * 56.03382 * 22 20 19 42 42 H 1.08999 * 110.38806 * 336.14989 * 23 22 20 43 43 H 1.09002 * 110.38208 * 98.52299 * 23 22 20 44 44 H 1.08002 * 124.44180 * 196.41386 * 24 23 22 45 45 H 1.07995 * 124.44940 * 180.02562 * 25 24 23 46 46 H 1.08997 * 110.38932 * 224.75478 * 26 25 24 47 47 H 1.09001 * 110.38229 * 102.38275 * 26 25 24 48 48 H 1.09002 * 109.24915 * 191.88159 * 27 19 18 49 49 H 1.08997 * 109.26046 * 72.45243 * 27 19 18 50 50 H 1.08997 * 109.88409 * 291.60506 * 28 27 19 51 51 H 1.09003 * 109.87857 * 170.52575 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 7 2.1985 -5.9795 -0.0089 14 6 2.8879 -6.0855 -1.3206 15 6 2.6900 -7.5421 -1.8212 16 6 2.4076 -8.2928 -0.5099 17 1 3.3219 -8.4980 0.0468 18 6 1.5509 -9.5459 -0.6754 19 7 1.1972 -9.9770 0.6926 20 6 1.4323 -11.2481 1.0737 21 8 1.9325 -12.0320 0.2950 22 6 1.0737 -11.6955 2.4673 23 6 1.9761 -11.0105 3.5197 24 6 2.2241 -12.0742 4.5638 25 6 1.9268 -13.2600 4.1066 26 6 1.4303 -13.1848 2.6814 27 6 0.5922 -9.0353 1.6394 28 6 1.3742 -7.7093 1.6583 29 6 1.5185 -7.2497 0.2216 30 1 0.5356 -7.2228 -0.2488 31 1 -0.4850 0.8400 -0.0004 32 1 0.3534 -2.3906 0.0005 33 1 0.6165 -4.9246 0.8846 34 1 0.6178 -4.9168 -0.8953 35 1 2.4464 -5.3856 -2.0301 36 1 3.9507 -5.8754 -1.1998 37 1 3.5961 -7.9169 -2.2974 38 1 1.8394 -7.6092 -2.4996 39 1 2.1237 -10.3260 -1.1769 40 1 0.6473 -9.3226 -1.2426 41 1 0.0197 -11.5120 2.6758 42 1 2.9165 -10.6963 3.0668 43 1 1.4627 -10.1566 3.9620 44 1 2.5986 -11.8789 5.5578 45 1 2.0222 -14.1746 4.6728 46 1 0.5462 -13.8094 2.5538 47 1 2.2151 -13.4902 1.9894 48 1 0.6026 -9.4729 2.6377 49 1 -0.4386 -8.8405 1.3437 50 1 2.3591 -7.8659 2.0981 51 1 0.8251 -6.9633 2.2328 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272206475.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:25:47 Heat of formation + Delta-G solvation = -57.196633 kcal Electronic energy + Delta-G solvation = -31119.686183 eV Core-core repulsion = 27018.359171 eV Total energy + Delta-G solvation = -4101.327012 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.97054 -40.81051 -39.69243 -38.48146 -37.02861 -35.89509 -33.87402 -33.20465 -32.61703 -31.08262 -29.59298 -29.02192 -28.30605 -26.34453 -25.33835 -23.95410 -22.77306 -22.11114 -21.32723 -20.77611 -19.85197 -19.80953 -19.63679 -18.22104 -17.67373 -17.26643 -17.05710 -16.68519 -16.60603 -16.39478 -16.00122 -15.67022 -15.59253 -15.38694 -14.93298 -14.48983 -14.15805 -14.11756 -13.96283 -13.77208 -13.55388 -13.48447 -13.38197 -13.31224 -13.01239 -12.89985 -12.66071 -12.45855 -12.40093 -12.28677 -12.23545 -12.12595 -12.10206 -12.05380 -11.89482 -11.70786 -11.48477 -11.18059 -10.79740 -10.30560 -9.99241 -9.79210 -9.73397 -9.21569 -8.45590 -5.93851 1.37357 1.37780 1.41494 1.53970 1.55090 1.91750 2.07888 2.28843 2.73905 3.20872 3.26278 3.38988 3.50227 3.58233 3.69812 3.80246 3.82259 4.01078 4.10061 4.21140 4.25497 4.29787 4.30537 4.37481 4.42258 4.49728 4.51568 4.54617 4.58377 4.63919 4.73657 4.77004 4.78947 4.81926 4.86354 4.90444 4.96270 4.98559 5.08848 5.11543 5.18931 5.29986 5.35629 5.41931 5.51316 5.64835 5.89760 5.99399 6.02261 6.20651 6.33999 6.62773 7.10965 7.14862 7.58674 8.15181 8.71811 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021469 B = 0.002074 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.874179 B =13495.883343 C =14156.553675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.991 3.009 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.330 4.330 8 H 0.076 0.924 9 N -0.576 5.576 10 C 0.442 3.558 11 O -0.617 6.617 12 C 0.056 3.944 13 N -0.517 5.517 14 C 0.057 3.943 15 C -0.122 4.122 16 C -0.099 4.099 17 H 0.076 0.924 18 C 0.129 3.871 19 N -0.608 5.608 20 C 0.520 3.480 21 O -0.583 6.583 22 C -0.113 4.113 23 C -0.090 4.090 24 C -0.171 4.171 25 C -0.169 4.169 26 C -0.091 4.091 27 C 0.105 3.895 28 C -0.114 4.114 29 C 0.068 3.932 30 H 0.060 0.940 31 H 0.277 0.723 32 H 0.396 0.604 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.039 0.961 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.130 0.870 42 H 0.064 0.936 43 H 0.103 0.897 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.082 0.918 47 H 0.068 0.932 48 H 0.114 0.886 49 H 0.088 0.912 50 H 0.064 0.936 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.864 -24.282 5.967 25.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.815 3.185 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.460 4.460 8 H 0.094 0.906 9 N -0.214 5.214 10 C 0.229 3.771 11 O -0.503 6.503 12 C -0.075 4.075 13 N -0.241 5.241 14 C -0.071 4.071 15 C -0.160 4.160 16 C -0.119 4.119 17 H 0.094 0.906 18 C 0.006 3.994 19 N -0.339 5.339 20 C 0.309 3.691 21 O -0.464 6.464 22 C -0.134 4.134 23 C -0.127 4.127 24 C -0.188 4.188 25 C -0.186 4.186 26 C -0.129 4.129 27 C -0.017 4.017 28 C -0.153 4.153 29 C -0.041 4.041 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.230 0.770 33 H 0.128 0.872 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.148 0.852 42 H 0.083 0.917 43 H 0.121 0.879 44 H 0.160 0.840 45 H 0.158 0.842 46 H 0.101 0.899 47 H 0.086 0.914 48 H 0.132 0.868 49 H 0.106 0.894 50 H 0.083 0.917 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.596 -24.392 5.956 25.365 hybrid contribution -0.331 1.158 -0.845 1.471 sum -3.927 -23.235 5.111 24.112 Atomic orbital electron populations 1.69664 1.06712 1.29205 1.50548 1.25999 0.96558 1.02281 0.96465 0.84960 0.77895 0.77092 0.78586 1.19742 1.19475 1.19923 1.19615 0.92579 0.84058 1.49748 0.90556 1.41931 1.09267 1.04666 1.65523 1.20828 0.88302 0.85954 0.82035 1.90494 1.15843 1.87902 1.56012 1.21909 0.93529 0.88744 1.03328 1.62857 1.27435 1.02164 1.31634 1.22988 0.99229 0.96381 0.88475 1.22596 1.03406 0.93240 0.96796 1.22456 0.98351 0.94256 0.96791 0.90582 1.21643 0.99019 0.95451 0.83255 1.48341 1.61555 1.10232 1.13802 1.20938 0.76809 0.81460 0.89870 1.90661 1.45828 1.54010 1.55852 1.22236 1.03103 0.97460 0.90630 1.21449 0.98970 0.98623 0.93689 1.23408 1.01149 0.94605 0.99664 1.23426 1.00547 0.98994 0.95683 1.21288 1.01752 0.94441 0.95379 1.22120 0.96849 0.88429 0.94291 1.21684 1.01584 0.96673 0.95353 1.22212 0.96463 0.87644 0.97757 0.92189 0.91347 0.77034 0.87183 0.91404 0.94286 0.92741 0.89718 0.89481 0.89930 0.89391 0.85215 0.91730 0.87894 0.83966 0.84167 0.89934 0.91350 0.86797 0.89393 0.91674 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.30 13.05 21.66 0.28 -49.01 16 2 C -0.01 -0.72 5.50 84.92 0.47 -0.25 16 3 Si 0.99 42.96 29.55 68.60 2.03 44.98 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.33 -18.76 9.68 84.04 0.81 -17.94 16 8 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 9 N -0.58 -29.39 5.29 -306.98 -1.62 -31.01 16 10 C 0.44 20.92 7.52 87.66 0.66 21.58 16 11 O -0.62 -34.38 15.19 -3.07 -0.05 -34.43 16 12 C 0.06 1.89 5.03 85.56 0.43 2.32 16 13 N -0.52 -16.22 4.78 -866.77 -4.15 -20.37 16 14 C 0.06 1.78 5.73 86.77 0.50 2.28 16 15 C -0.12 -2.66 6.51 31.62 0.21 -2.46 16 16 C -0.10 -2.08 2.87 -9.84 -0.03 -2.11 16 17 H 0.08 1.89 8.08 -2.39 -0.02 1.87 16 18 C 0.13 2.38 5.96 86.04 0.51 2.89 16 19 N -0.61 -10.42 2.99 -817.12 -2.44 -12.87 16 20 C 0.52 10.50 6.95 87.66 0.61 11.11 16 21 O -0.58 -16.55 14.87 -3.06 -0.05 -16.60 16 22 C -0.11 -1.58 2.50 -10.43 -0.03 -1.60 16 23 C -0.09 -1.12 5.39 30.53 0.16 -0.96 16 24 C -0.17 -2.02 10.77 26.27 0.28 -1.74 16 25 C -0.17 -2.12 10.78 26.27 0.28 -1.84 16 26 C -0.09 -1.41 6.18 30.53 0.19 -1.22 16 27 C 0.11 1.28 5.99 86.68 0.52 1.80 16 28 C -0.11 -2.00 6.05 30.43 0.18 -1.81 16 29 C 0.07 1.49 1.74 45.43 0.08 1.57 16 30 H 0.06 1.18 7.60 -2.39 -0.02 1.16 16 31 H 0.28 13.90 8.31 -92.71 -0.77 13.12 16 32 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 33 H 0.11 3.17 8.08 -2.38 -0.02 3.15 16 34 H 0.07 2.04 7.91 -2.39 -0.02 2.02 16 35 H 0.04 1.32 7.40 -2.39 -0.02 1.30 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.09 1.61 8.10 -2.39 -0.02 1.59 16 39 H 0.08 1.79 7.00 -2.39 -0.02 1.77 16 40 H 0.09 1.37 8.07 -2.39 -0.02 1.35 16 41 H 0.13 1.18 7.84 -2.39 -0.02 1.16 16 42 H 0.06 1.05 7.88 -2.39 -0.02 1.03 16 43 H 0.10 0.84 6.61 -2.39 -0.02 0.83 16 44 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 45 H 0.14 1.31 8.06 -2.91 -0.02 1.28 16 46 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.07 1.43 6.96 -2.39 -0.02 1.41 16 48 H 0.11 0.94 3.92 -2.39 -0.01 0.93 16 49 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.06 1.32 8.08 -2.39 -0.02 1.30 16 51 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -73.69 395.90 0.06 -73.63 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: 0.21 Total: 34.05 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 5.84 Total: 11.62 kcal Atomic # 7 Polarization: -105.33 SS G_CDS: -7.93 Total: -113.26 kcal Atomic # 8 Polarization: -50.93 SS G_CDS: -0.09 Total: -51.02 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -73.69 0.06 -73.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272206475.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.437 kcal (2) G-P(sol) polarization free energy of solvation -73.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds