Wall clock time and date at job start Sat Apr 11 2020 08:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 119.99989 * 2 1 4 4 H 1.48499 * 109.46991 * 269.99806 * 3 2 1 5 5 H 1.48492 * 109.47235 * 29.99910 * 3 2 1 6 6 H 1.48504 * 109.47255 * 150.00012 * 3 2 1 7 7 C 1.38816 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00099 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99634 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99955 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47475 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47347 * 179.97438 * 11 10 9 13 13 H 1.08996 * 110.88571 * 51.11806 * 12 11 10 14 14 C 1.55157 * 111.00516 * 287.19708 * 12 11 10 15 15 C 1.54310 * 102.86465 * 206.22828 * 14 12 11 16 16 N 1.47030 * 107.27500 * 22.52696 * 15 14 12 17 17 C 1.34777 * 125.64752 * 180.96890 * 16 15 14 18 18 O 1.21288 * 119.99593 * 179.69024 * 17 16 15 19 19 C 1.50697 * 120.00369 * 359.69182 * 17 16 15 20 20 C 1.52997 * 109.47466 * 180.02562 * 19 17 16 21 21 C 1.53000 * 109.47060 * 180.02562 * 20 19 17 22 22 N 1.46499 * 109.46840 * 180.02562 * 21 20 19 23 23 C 1.35770 * 119.62463 * 269.71991 * 22 21 20 24 24 C 1.35349 * 120.69987 * 179.76121 * 23 22 21 25 25 C 1.40194 * 119.94965 * 0.51420 * 24 23 22 26 26 C 1.36393 * 119.26583 * 359.74477 * 25 24 23 27 27 C 1.34660 * 119.62965 * 90.00085 * 22 21 20 28 28 O 1.22068 * 119.98289 * 359.97438 * 27 22 21 29 29 C 1.47420 * 108.70061 * 0.70165 * 16 15 14 30 30 H 0.97000 * 120.00535 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00582 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47503 * 59.99499 * 10 9 7 33 33 H 1.09008 * 109.46955 * 299.99687 * 10 9 7 34 34 H 1.09003 * 109.46937 * 59.99431 * 11 10 9 35 35 H 1.08999 * 109.47046 * 300.00167 * 11 10 9 36 36 H 1.09005 * 110.72110 * 324.78707 * 14 12 11 37 37 H 1.09000 * 110.71973 * 87.88229 * 14 12 11 38 38 H 1.09000 * 109.99221 * 263.04899 * 15 14 12 39 39 H 1.09002 * 109.77952 * 141.88274 * 15 14 12 40 40 H 1.09002 * 109.47120 * 59.99760 * 19 17 16 41 41 H 1.08998 * 109.46862 * 300.00562 * 19 17 16 42 42 H 1.09002 * 109.47153 * 59.99773 * 20 19 17 43 43 H 1.09001 * 109.46832 * 299.99964 * 20 19 17 44 44 H 1.09001 * 109.47194 * 299.99650 * 21 20 19 45 45 H 1.08992 * 109.47399 * 59.99823 * 21 20 19 46 46 H 1.07995 * 119.64395 * 0.02562 * 23 22 21 47 47 H 1.08004 * 120.01979 * 180.23881 * 24 23 22 48 48 H 1.07997 * 120.36434 * 179.76730 * 25 24 23 49 49 H 1.08000 * 120.34687 * 180.02562 * 26 25 24 50 50 H 1.09004 * 110.36580 * 94.94163 * 29 16 15 51 51 H 1.08998 * 110.36749 * 217.14953 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0638 -4.8198 -0.0022 12 6 1.8288 -6.1447 -0.0029 13 1 2.5767 -6.1620 0.7899 14 6 2.4778 -6.4115 -1.3867 15 6 2.5776 -7.9509 -1.4284 16 7 1.5802 -8.4787 -0.4858 17 6 1.3650 -9.7819 -0.2180 18 8 0.5155 -10.1036 0.5856 19 6 2.1800 -10.8394 -0.9169 20 6 1.7391 -12.2235 -0.4366 21 6 2.5671 -13.2970 -1.1458 22 7 2.1445 -14.6224 -0.6864 23 6 2.7551 -15.1869 0.3868 24 6 2.3788 -16.4082 0.8327 25 6 1.3556 -17.1077 0.1777 26 6 0.7468 -16.5412 -0.9034 27 6 1.1586 -15.2693 -1.3367 28 8 0.6224 -14.7507 -2.3029 29 6 0.8588 -7.3460 0.1225 30 1 -0.4851 0.8400 -0.0004 31 1 0.3555 -2.3881 -0.0016 32 1 2.6841 -3.7150 0.8888 33 1 2.6854 -3.7141 -0.8912 34 1 0.4375 -4.7618 -0.8924 35 1 0.4368 -4.7622 0.8875 36 1 1.8405 -6.0408 -2.1895 37 1 3.4679 -5.9589 -1.4420 38 1 3.5761 -8.2679 -1.1275 39 1 2.3610 -8.3074 -2.4354 40 1 3.2359 -10.6944 -0.6884 41 1 2.0276 -10.7631 -1.9935 42 1 0.6833 -12.3682 -0.6655 43 1 1.8914 -12.3000 0.6400 44 1 2.4153 -13.2207 -2.2225 45 1 3.6227 -13.1522 -0.9166 46 1 3.5466 -14.6540 0.8926 47 1 2.8695 -16.8453 1.6899 48 1 1.0525 -18.0842 0.5255 49 1 -0.0437 -17.0644 -1.4209 50 1 -0.0638 -7.1471 -0.4227 51 1 0.6422 -7.5530 1.1705 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272522942.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:26:11 Heat of formation + Delta-G solvation = -36.025149 kcal Electronic energy + Delta-G solvation = -28882.225927 eV Core-core repulsion = 24781.816979 eV Total energy + Delta-G solvation = -4100.408948 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.75932 -40.28578 -38.05394 -37.28684 -35.96031 -35.16917 -33.35975 -32.86449 -30.94727 -30.30589 -29.61856 -28.45007 -26.97280 -24.63587 -24.07719 -23.40173 -22.94834 -22.05271 -21.39468 -20.20905 -19.35507 -18.10549 -17.74495 -17.23548 -17.13268 -16.75405 -16.44954 -16.00513 -15.82648 -15.30602 -14.89348 -14.72935 -14.60816 -14.44051 -14.04253 -13.70994 -13.40573 -13.32321 -13.13351 -13.02980 -12.80162 -12.71897 -12.49548 -12.34804 -12.27108 -12.17654 -12.01941 -11.66883 -11.33859 -11.27607 -11.07596 -10.83031 -10.67711 -10.57599 -10.50837 -10.33513 -10.32365 -10.07986 -9.98236 -9.68890 -8.87452 -8.81466 -8.42233 -6.92365 -5.76702 -3.05550 0.37774 1.44000 2.14641 2.42933 2.78572 3.23137 3.43057 3.47912 3.49967 4.03943 4.09104 4.12302 4.39386 4.44631 4.47246 4.52048 4.58004 4.61247 4.70510 4.78602 4.80718 4.84368 4.95220 4.98804 5.05972 5.08756 5.26284 5.37523 5.50867 5.53414 5.54431 5.59911 5.60870 5.64891 5.77874 5.78244 5.82108 5.82379 5.88776 6.06307 6.07863 6.09338 6.23930 6.34895 6.37825 6.63478 6.82548 6.87189 7.32763 7.63471 7.69074 7.95868 8.42276 9.53191 10.11900 10.46060 11.46269 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.040424 B = 0.001309 C = 0.001306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.484990 B =21380.199137 C =21426.623614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.155 3.845 11 C -0.116 4.116 12 C -0.094 4.094 13 H 0.085 0.915 14 C -0.128 4.128 15 C 0.099 3.901 16 N -0.619 5.619 17 C 0.527 3.473 18 O -0.542 6.542 19 C -0.132 4.132 20 C -0.118 4.118 21 C 0.089 3.911 22 N -0.494 5.494 23 C 0.135 3.865 24 C -0.236 4.236 25 C -0.017 4.017 26 C -0.245 4.245 27 C 0.511 3.489 28 O -0.550 6.550 29 C 0.108 3.892 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.017 0.983 33 H 0.019 0.981 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.103 0.897 45 H 0.093 0.907 46 H 0.162 0.838 47 H 0.145 0.855 48 H 0.134 0.866 49 H 0.147 0.853 50 H 0.070 0.930 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.706 -35.624 -0.620 36.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.028 3.972 11 C -0.154 4.154 12 C -0.113 4.113 13 H 0.103 0.897 14 C -0.166 4.166 15 C -0.024 4.024 16 N -0.353 5.353 17 C 0.316 3.684 18 O -0.420 6.420 19 C -0.172 4.172 20 C -0.157 4.157 21 C -0.032 4.032 22 N -0.205 5.205 23 C 0.008 3.992 24 C -0.259 4.259 25 C -0.039 4.039 26 C -0.266 4.266 27 C 0.313 3.687 28 O -0.432 6.432 29 C -0.014 4.014 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.034 0.966 33 H 0.037 0.963 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.121 0.879 45 H 0.111 0.889 46 H 0.179 0.821 47 H 0.163 0.837 48 H 0.152 0.848 49 H 0.165 0.835 50 H 0.089 0.911 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.032 -35.389 -0.828 36.533 hybrid contribution 0.247 0.962 0.076 0.997 sum 9.279 -34.426 -0.752 35.663 Atomic orbital electron populations 1.69656 1.05133 1.25662 1.57762 1.24746 0.95519 0.97710 1.03033 0.86189 0.78644 0.83846 0.77514 1.21716 1.21746 1.20772 1.19232 0.91018 0.84223 1.42701 0.91214 1.42376 1.05912 1.00087 1.89515 1.20620 0.93458 0.85471 0.97690 1.21674 0.98678 0.92517 1.02556 1.22334 0.97463 0.94078 0.97458 0.89701 1.22750 1.02752 0.92860 0.98214 1.22121 0.91877 0.95471 0.92912 1.48566 1.38095 1.05325 1.43313 1.20212 0.83867 0.81931 0.82435 1.90729 1.34731 1.80984 1.35535 1.21521 1.00709 0.93069 1.01945 1.21652 1.01559 0.91598 1.00877 1.22063 0.99293 0.79801 1.02071 1.45561 1.31353 1.17746 1.25816 1.22000 0.95598 0.94375 0.87244 1.20678 1.03743 0.96163 1.05310 1.21457 0.91610 0.98805 0.92026 1.22155 1.06171 0.96349 1.01967 1.17205 0.80101 0.87198 0.84205 1.90981 1.55298 1.69133 1.27795 1.22363 0.95365 0.84511 0.99153 0.93502 0.78306 0.96559 0.96326 0.91548 0.91509 0.90018 0.89559 0.91352 0.91341 0.88590 0.88417 0.90051 0.90551 0.87919 0.88861 0.82083 0.83746 0.84818 0.83500 0.91139 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.38 13.06 55.49 0.72 -27.66 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.62 5.60 -59.90 -0.34 -18.96 16 10 C 0.16 3.00 6.16 -4.04 -0.02 2.98 16 11 C -0.12 -1.76 4.84 -26.73 -0.13 -1.88 16 12 C -0.09 -1.10 3.00 -88.47 -0.27 -1.37 16 13 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 14 C -0.13 -1.25 5.91 -24.90 -0.15 -1.39 16 15 C 0.10 0.80 6.48 -3.07 -0.02 0.78 16 16 N -0.62 -6.69 3.33 -170.53 -0.57 -7.26 16 17 C 0.53 6.07 7.85 -10.99 -0.09 5.99 16 18 O -0.54 -8.52 16.24 5.55 0.09 -8.43 16 19 C -0.13 -0.92 4.89 -27.89 -0.14 -1.06 16 20 C -0.12 -0.92 4.83 -26.73 -0.13 -1.05 16 21 C 0.09 0.51 5.34 -4.04 -0.02 0.49 16 22 N -0.49 -3.54 2.58 -119.77 -0.31 -3.85 16 23 C 0.14 0.57 10.28 -16.84 -0.17 0.40 16 24 C -0.24 -0.92 10.01 -39.88 -0.40 -1.32 16 25 C -0.02 -0.09 10.10 -39.51 -0.40 -0.49 16 26 C -0.24 -1.93 9.99 -39.38 -0.39 -2.32 16 27 C 0.51 5.30 7.41 -15.45 -0.11 5.19 16 28 O -0.55 -7.87 16.64 4.86 0.08 -7.78 16 29 C 0.11 1.31 6.38 -2.53 -0.02 1.29 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.38 10.23 7.67 -40.82 -0.31 9.92 16 32 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.02 0.36 7.75 -51.92 -0.40 -0.05 16 34 H 0.07 1.02 7.97 -51.93 -0.41 0.61 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 0.84 7.91 -51.93 -0.41 0.43 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 43 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 44 H 0.10 0.71 7.39 -51.93 -0.38 0.32 16 45 H 0.09 0.22 8.01 -51.93 -0.42 -0.20 16 46 H 0.16 0.14 8.03 -52.49 -0.42 -0.29 16 47 H 0.14 0.20 8.06 -52.48 -0.42 -0.22 16 48 H 0.13 0.32 8.06 -52.49 -0.42 -0.10 16 49 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 50 H 0.07 0.88 8.04 -51.93 -0.42 0.46 16 51 H 0.08 1.01 8.03 -51.93 -0.42 0.60 16 LS Contribution 419.71 15.07 6.33 6.33 Total: -1.00 -37.88 419.71 -10.35 -48.23 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -8.63 Total: 3.22 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -2.70 Total: -1.18 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: -0.49 Total: -57.73 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: 0.17 Total: -16.21 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -37.88 -10.35 -48.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272522942.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.205 kcal (2) G-P(sol) polarization free energy of solvation -37.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds