Wall clock time and date at job start Sat Apr 11 2020 08:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 119.99989 * 2 1 4 4 H 1.48499 * 109.46991 * 269.99806 * 3 2 1 5 5 H 1.48492 * 109.47235 * 29.99910 * 3 2 1 6 6 H 1.48504 * 109.47255 * 150.00012 * 3 2 1 7 7 C 1.38816 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00099 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99634 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99955 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47475 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47347 * 179.97438 * 11 10 9 13 13 H 1.08996 * 110.88571 * 51.11806 * 12 11 10 14 14 C 1.55157 * 111.00516 * 287.19708 * 12 11 10 15 15 C 1.54310 * 102.86465 * 206.22828 * 14 12 11 16 16 N 1.47030 * 107.27500 * 22.52696 * 15 14 12 17 17 C 1.34777 * 125.64752 * 180.96890 * 16 15 14 18 18 O 1.21288 * 119.99593 * 179.69024 * 17 16 15 19 19 C 1.50697 * 120.00369 * 359.69182 * 17 16 15 20 20 C 1.52997 * 109.47466 * 180.02562 * 19 17 16 21 21 C 1.53000 * 109.47060 * 180.02562 * 20 19 17 22 22 N 1.46499 * 109.46840 * 180.02562 * 21 20 19 23 23 C 1.35770 * 119.62463 * 269.71991 * 22 21 20 24 24 C 1.35349 * 120.69987 * 179.76121 * 23 22 21 25 25 C 1.40194 * 119.94965 * 0.51420 * 24 23 22 26 26 C 1.36393 * 119.26583 * 359.74477 * 25 24 23 27 27 C 1.34660 * 119.62965 * 90.00085 * 22 21 20 28 28 O 1.22068 * 119.98289 * 359.97438 * 27 22 21 29 29 C 1.47420 * 108.70061 * 0.70165 * 16 15 14 30 30 H 0.97000 * 120.00535 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00582 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47503 * 59.99499 * 10 9 7 33 33 H 1.09008 * 109.46955 * 299.99687 * 10 9 7 34 34 H 1.09003 * 109.46937 * 59.99431 * 11 10 9 35 35 H 1.08999 * 109.47046 * 300.00167 * 11 10 9 36 36 H 1.09005 * 110.72110 * 324.78707 * 14 12 11 37 37 H 1.09000 * 110.71973 * 87.88229 * 14 12 11 38 38 H 1.09000 * 109.99221 * 263.04899 * 15 14 12 39 39 H 1.09002 * 109.77952 * 141.88274 * 15 14 12 40 40 H 1.09002 * 109.47120 * 59.99760 * 19 17 16 41 41 H 1.08998 * 109.46862 * 300.00562 * 19 17 16 42 42 H 1.09002 * 109.47153 * 59.99773 * 20 19 17 43 43 H 1.09001 * 109.46832 * 299.99964 * 20 19 17 44 44 H 1.09001 * 109.47194 * 299.99650 * 21 20 19 45 45 H 1.08992 * 109.47399 * 59.99823 * 21 20 19 46 46 H 1.07995 * 119.64395 * 0.02562 * 23 22 21 47 47 H 1.08004 * 120.01979 * 180.23881 * 24 23 22 48 48 H 1.07997 * 120.36434 * 179.76730 * 25 24 23 49 49 H 1.08000 * 120.34687 * 180.02562 * 26 25 24 50 50 H 1.09004 * 110.36580 * 94.94163 * 29 16 15 51 51 H 1.08998 * 110.36749 * 217.14953 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0638 -4.8198 -0.0022 12 6 1.8288 -6.1447 -0.0029 13 1 2.5767 -6.1620 0.7899 14 6 2.4778 -6.4115 -1.3867 15 6 2.5776 -7.9509 -1.4284 16 7 1.5802 -8.4787 -0.4858 17 6 1.3650 -9.7819 -0.2180 18 8 0.5155 -10.1036 0.5856 19 6 2.1800 -10.8394 -0.9169 20 6 1.7391 -12.2235 -0.4366 21 6 2.5671 -13.2970 -1.1458 22 7 2.1445 -14.6224 -0.6864 23 6 2.7551 -15.1869 0.3868 24 6 2.3788 -16.4082 0.8327 25 6 1.3556 -17.1077 0.1777 26 6 0.7468 -16.5412 -0.9034 27 6 1.1586 -15.2693 -1.3367 28 8 0.6224 -14.7507 -2.3029 29 6 0.8588 -7.3460 0.1225 30 1 -0.4851 0.8400 -0.0004 31 1 0.3555 -2.3881 -0.0016 32 1 2.6841 -3.7150 0.8888 33 1 2.6854 -3.7141 -0.8912 34 1 0.4375 -4.7618 -0.8924 35 1 0.4368 -4.7622 0.8875 36 1 1.8405 -6.0408 -2.1895 37 1 3.4679 -5.9589 -1.4420 38 1 3.5761 -8.2679 -1.1275 39 1 2.3610 -8.3074 -2.4354 40 1 3.2359 -10.6944 -0.6884 41 1 2.0276 -10.7631 -1.9935 42 1 0.6833 -12.3682 -0.6655 43 1 1.8914 -12.3000 0.6400 44 1 2.4153 -13.2207 -2.2225 45 1 3.6227 -13.1522 -0.9166 46 1 3.5466 -14.6540 0.8926 47 1 2.8695 -16.8453 1.6899 48 1 1.0525 -18.0842 0.5255 49 1 -0.0437 -17.0644 -1.4209 50 1 -0.0638 -7.1471 -0.4227 51 1 0.6422 -7.5530 1.1705 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272522942.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:26:09 Heat of formation + Delta-G solvation = -61.004629 kcal Electronic energy + Delta-G solvation = -28883.309118 eV Core-core repulsion = 24781.816979 eV Total energy + Delta-G solvation = -4101.492139 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.30104 -41.16498 -39.02318 -37.95889 -36.84380 -36.47572 -34.59203 -33.77451 -32.57191 -30.78591 -30.58313 -29.46002 -28.00820 -25.83456 -24.89969 -24.37393 -23.67827 -23.08197 -22.45433 -21.26560 -20.16610 -19.13684 -18.66333 -18.26305 -17.96119 -17.40240 -17.20480 -16.78166 -16.59545 -16.58111 -16.01708 -15.61046 -15.42533 -15.33146 -15.21512 -15.06921 -14.79190 -14.39077 -14.01710 -13.87748 -13.77491 -13.32258 -13.27973 -13.10651 -13.02225 -12.90235 -12.85961 -12.73836 -12.69570 -12.56454 -12.35295 -12.17276 -11.95437 -11.85108 -11.62224 -11.54741 -11.50077 -11.12409 -10.99035 -10.91874 -10.90505 -9.68766 -8.99391 -8.94974 -7.94903 -5.24076 -0.05681 0.94013 1.48052 1.50075 1.57755 1.58538 1.64999 2.00162 2.56872 2.70453 3.35018 3.39384 3.60921 3.66453 3.69641 3.76934 3.81013 3.94340 3.99270 4.14907 4.17451 4.24509 4.31016 4.33468 4.35363 4.42769 4.46787 4.49714 4.56856 4.58846 4.61403 4.68448 4.78735 4.85491 4.89261 4.94986 5.01837 5.06192 5.12580 5.16696 5.23053 5.24589 5.32266 5.39027 5.42312 5.46623 5.50550 5.69306 6.12127 6.27578 6.50883 7.00634 7.09929 7.33382 8.10870 8.32481 9.28967 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.040424 B = 0.001309 C = 0.001306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.484990 B =21380.199137 C =21426.623614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.975 3.025 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.246 4.246 8 H 0.078 0.922 9 N -0.751 5.751 10 C 0.154 3.846 11 C -0.104 4.104 12 C -0.083 4.083 13 H 0.092 0.908 14 C -0.126 4.126 15 C 0.100 3.900 16 N -0.619 5.619 17 C 0.518 3.482 18 O -0.596 6.596 19 C -0.121 4.121 20 C -0.110 4.110 21 C 0.091 3.909 22 N -0.495 5.495 23 C 0.134 3.866 24 C -0.237 4.237 25 C 0.005 3.995 26 C -0.289 4.289 27 C 0.490 3.510 28 O -0.614 6.614 29 C 0.108 3.892 30 H 0.251 0.749 31 H 0.372 0.628 32 H 0.019 0.981 33 H 0.031 0.969 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.139 0.861 41 H 0.113 0.887 42 H 0.033 0.967 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.144 0.856 46 H 0.206 0.794 47 H 0.181 0.819 48 H 0.163 0.837 49 H 0.138 0.862 50 H 0.059 0.941 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.963 -36.927 0.084 39.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.804 3.196 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.378 4.378 8 H 0.096 0.904 9 N -0.394 5.394 10 C 0.028 3.972 11 C -0.142 4.142 12 C -0.103 4.103 13 H 0.110 0.890 14 C -0.164 4.164 15 C -0.021 4.021 16 N -0.352 5.352 17 C 0.308 3.692 18 O -0.478 6.478 19 C -0.160 4.160 20 C -0.149 4.149 21 C -0.030 4.030 22 N -0.203 5.203 23 C 0.008 3.992 24 C -0.259 4.259 25 C -0.017 4.017 26 C -0.311 4.311 27 C 0.295 3.705 28 O -0.502 6.502 29 C -0.015 4.015 30 H 0.059 0.941 31 H 0.203 0.797 32 H 0.037 0.963 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.106 0.894 40 H 0.157 0.843 41 H 0.131 0.869 42 H 0.052 0.948 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.161 0.839 46 H 0.223 0.777 47 H 0.198 0.802 48 H 0.180 0.820 49 H 0.156 0.844 50 H 0.077 0.923 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.374 -36.726 -0.115 39.085 hybrid contribution -1.029 1.288 -0.026 1.649 sum 12.345 -35.437 -0.141 37.527 Atomic orbital electron populations 1.69823 1.06763 1.26084 1.59617 1.25607 0.96385 1.01275 1.03709 0.85118 0.77726 0.79291 0.77506 1.21261 1.22334 1.19215 1.19682 0.91624 0.85377 1.41127 0.90365 1.42659 1.05684 1.01562 1.89490 1.20801 0.94029 0.84384 0.97956 1.21508 0.97900 0.93026 1.01772 1.22156 0.97056 0.91669 0.99381 0.89019 1.22762 1.02972 0.94489 0.96174 1.22323 0.92567 0.93887 0.93361 1.48681 1.38290 1.04900 1.43374 1.21089 0.83535 0.82664 0.81866 1.90705 1.37153 1.81791 1.38109 1.21559 1.01990 0.90471 1.02010 1.21521 0.99203 0.93123 1.01011 1.22176 1.01349 0.78481 1.00964 1.45618 1.30496 1.18038 1.26151 1.22823 0.95770 0.94783 0.85867 1.21204 1.02945 0.95949 1.05774 1.21866 0.90342 0.99554 0.89966 1.22119 1.08130 0.96442 1.04407 1.17632 0.80713 0.88092 0.84088 1.90922 1.57867 1.70709 1.30693 1.22200 0.95442 0.85550 0.98310 0.94052 0.79676 0.96322 0.95136 0.92071 0.92711 0.90772 0.88205 0.88141 0.89383 0.84279 0.86926 0.94833 0.90687 0.89451 0.83864 0.77710 0.80218 0.81975 0.84392 0.92255 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.10 13.06 21.65 0.28 -59.82 16 2 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 3 Si 0.97 45.92 29.55 68.60 2.03 47.95 16 4 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.25 -13.76 9.99 84.03 0.84 -12.92 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.75 -38.29 5.60 -343.43 -1.92 -40.21 16 10 C 0.15 5.85 6.16 86.38 0.53 6.38 16 11 C -0.10 -3.13 4.84 30.59 0.15 -2.98 16 12 C -0.08 -1.84 3.00 -9.40 -0.03 -1.87 16 13 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 14 C -0.13 -2.12 5.91 31.78 0.19 -1.94 16 15 C 0.10 1.25 6.48 86.72 0.56 1.81 16 16 N -0.62 -12.42 3.33 -811.81 -2.70 -15.12 16 17 C 0.52 11.47 7.85 87.66 0.69 12.16 16 18 O -0.60 -19.37 16.24 -3.05 -0.05 -19.42 16 19 C -0.12 -1.38 4.89 29.85 0.15 -1.23 16 20 C -0.11 -1.62 4.83 30.59 0.15 -1.47 16 21 C 0.09 0.88 5.34 86.38 0.46 1.34 16 22 N -0.49 -6.58 2.58 -650.98 -1.68 -8.26 16 23 C 0.13 0.68 10.28 83.42 0.86 1.54 16 24 C -0.24 -1.02 10.01 22.08 0.22 -0.80 16 25 C 0.00 0.04 10.10 22.31 0.23 0.26 16 26 C -0.29 -4.90 9.99 22.40 0.22 -4.67 16 27 C 0.49 10.93 7.41 84.82 0.63 11.56 16 28 O -0.61 -19.62 16.64 -5.54 -0.09 -19.71 16 29 C 0.11 2.60 6.38 86.86 0.55 3.16 16 30 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 31 H 0.37 20.33 7.67 -92.71 -0.71 19.62 16 32 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.03 1.11 7.75 -2.38 -0.02 1.09 16 34 H 0.06 1.90 7.97 -2.39 -0.02 1.88 16 35 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.07 1.38 7.91 -2.38 -0.02 1.36 16 37 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.03 0.81 8.10 -2.39 -0.02 0.80 16 43 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 44 H 0.09 1.17 7.39 -2.39 -0.02 1.15 16 45 H 0.14 -0.04 8.01 -2.39 -0.02 -0.06 16 46 H 0.21 -0.83 8.03 -2.91 -0.02 -0.85 16 47 H 0.18 -0.45 8.06 -2.91 -0.02 -0.48 16 48 H 0.16 0.34 8.06 -2.91 -0.02 0.32 16 49 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 50 H 0.06 1.54 8.04 -2.39 -0.02 1.52 16 51 H 0.06 1.68 8.03 -2.39 -0.02 1.66 16 Total: -1.00 -89.64 419.71 2.92 -86.72 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.20 Total: 21.56 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 6.86 Total: 6.32 kcal Atomic # 7 Polarization: -117.39 SS G_CDS: -6.02 Total: -123.41 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.14 Total: -39.13 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -89.64 2.92 -86.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272522942.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.717 kcal (2) G-P(sol) polarization free energy of solvation -89.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds