Wall clock time and date at job start Sat Apr 11 2020 08:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00552 * 2 1 4 4 H 1.48496 * 109.46976 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46861 * 300.00347 * 3 2 1 6 6 H 1.48497 * 109.46977 * 59.99862 * 3 2 1 7 7 C 1.37883 * 119.99315 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99759 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46804 * 180.02562 * 9 7 2 11 11 N 1.46495 * 109.47069 * 180.02562 * 10 9 7 12 12 C 1.45773 * 117.96243 * 270.02329 * 11 10 9 13 13 C 1.52789 * 110.51365 * 161.05598 * 12 11 10 14 14 C 1.53017 * 108.87890 * 50.49072 * 13 12 11 15 15 C 1.53080 * 108.55774 * 292.68537 * 14 13 12 16 16 C 1.33358 * 117.95832 * 89.99600 * 11 10 9 17 17 O 1.21273 * 118.22589 * 2.35796 * 16 11 10 18 18 C 1.52992 * 109.73070 * 290.62386 * 13 12 11 19 19 C 1.53059 * 109.28709 * 297.01847 * 18 13 12 20 20 N 1.46846 * 109.51061 * 300.98810 * 19 18 13 21 21 C 1.46900 * 111.00169 * 185.90930 * 20 19 18 22 22 C 1.50701 * 109.46991 * 45.75230 * 21 20 19 23 23 C 1.34327 * 126.44277 * 89.71112 * 22 21 20 24 24 N 1.34481 * 107.66879 * 179.87711 * 23 22 21 25 25 C 1.30252 * 108.70172 * 0.39887 * 24 23 22 26 26 O 1.33969 * 108.76129 * 359.74946 * 25 24 23 27 27 C 1.46856 * 111.22458 * 61.79214 * 20 19 18 28 28 C 1.52993 * 109.72577 * 170.40149 * 13 12 11 29 29 H 0.96998 * 119.99336 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47096 * 60.00544 * 9 7 2 31 31 H 1.08996 * 109.47504 * 299.99930 * 9 7 2 32 32 H 1.08998 * 109.47127 * 60.00223 * 10 9 7 33 33 H 1.08996 * 109.46755 * 300.00048 * 10 9 7 34 34 H 1.09005 * 109.26727 * 281.32193 * 12 11 10 35 35 H 1.09002 * 109.27051 * 40.81940 * 12 11 10 36 36 H 1.09004 * 109.52318 * 173.00169 * 14 13 12 37 37 H 1.09005 * 109.65287 * 52.44564 * 14 13 12 38 38 H 1.09002 * 109.40012 * 288.70075 * 15 14 13 39 39 H 1.09003 * 109.39573 * 168.88005 * 15 14 13 40 40 H 1.08997 * 109.49977 * 56.96468 * 18 13 12 41 41 H 1.08995 * 109.49828 * 177.07086 * 18 13 12 42 42 H 1.09000 * 109.46402 * 180.98484 * 19 18 13 43 43 H 1.08988 * 109.46472 * 61.00346 * 19 18 13 44 44 H 1.08996 * 109.47176 * 165.75206 * 21 20 19 45 45 H 1.08998 * 109.47218 * 285.75501 * 21 20 19 46 46 H 1.08005 * 126.16434 * 0.02562 * 23 22 21 47 47 H 1.08001 * 125.62347 * 179.73626 * 25 24 23 48 48 H 1.09002 * 109.46247 * 178.19266 * 27 20 19 49 49 H 1.09000 * 109.46028 * 58.21055 * 27 20 19 50 50 H 1.09003 * 109.49405 * 182.91666 * 28 13 12 51 51 H 1.08997 * 109.50007 * 303.03376 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2494 1.6176 0.0000 4 1 3.7093 1.3461 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1943 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 7 1.5124 -4.9309 -0.0012 12 6 1.1697 -5.5229 1.2861 13 6 0.0442 -6.5432 1.1235 14 6 0.4117 -7.5103 -0.0039 15 6 0.4093 -6.7399 -1.3267 16 6 1.2001 -5.4719 -1.1794 17 8 1.5756 -4.9098 -2.1862 18 6 -1.2596 -5.8228 0.7747 19 6 -1.6542 -4.9026 1.9325 20 7 -1.8215 -5.6977 3.1557 21 6 -2.3358 -4.8702 4.2551 22 6 -3.4772 -4.0230 3.7547 23 6 -4.7776 -4.3594 3.7481 24 7 -5.4634 -3.3280 3.2243 25 6 -4.6224 -2.3854 2.9071 26 8 -3.3845 -2.7876 3.2243 27 6 -0.5662 -6.3579 3.5366 28 6 -0.1390 -7.3222 2.4275 29 1 -0.4849 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8903 31 1 0.6245 -2.5571 0.8896 32 1 2.8716 -3.6046 0.8895 33 1 2.8716 -3.6045 -0.8905 34 1 2.0481 -6.0190 1.6991 35 1 0.8464 -4.7371 1.9688 36 1 -0.3223 -8.3151 -0.0473 37 1 1.4036 -7.9245 0.1771 38 1 -0.6169 -6.4966 -1.6022 39 1 0.8566 -7.3572 -2.1059 40 1 -1.1174 -5.2302 -0.1289 41 1 -2.0478 -6.5571 0.6086 42 1 -2.5921 -4.4010 1.6943 43 1 -0.8733 -4.1583 2.0871 44 1 -2.6876 -5.5145 5.0609 45 1 -1.5401 -4.2248 4.6271 46 1 -5.1970 -5.2896 4.1021 47 1 -4.8804 -1.4359 2.4616 48 1 -0.7142 -6.9126 4.4631 49 1 0.2095 -5.6062 3.6832 50 1 -0.9069 -8.0837 2.2915 51 1 0.8022 -7.7986 2.7020 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272743528.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:23:38 Heat of formation + Delta-G solvation = -9.826345 kcal Electronic energy + Delta-G solvation = -32732.364439 eV Core-core repulsion = 28633.091557 eV Total energy + Delta-G solvation = -4099.272882 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.33441 -40.98273 -38.79362 -36.26090 -34.84506 -34.66540 -32.89266 -32.36899 -30.90652 -30.14902 -29.61909 -27.22952 -25.71980 -24.94277 -24.04520 -23.38401 -22.60862 -22.03531 -21.24234 -20.81932 -19.55442 -17.60754 -17.41708 -16.95262 -16.56777 -16.14463 -15.87227 -15.61011 -15.34235 -15.15052 -14.93536 -14.48472 -14.38922 -14.18592 -14.05907 -13.67613 -13.45774 -13.04252 -13.02255 -12.79237 -12.54841 -12.29285 -12.25667 -12.02741 -11.93187 -11.69223 -11.34437 -11.32196 -11.20422 -11.12965 -10.96195 -10.72402 -10.62154 -10.52562 -10.33396 -10.24665 -9.86687 -9.83612 -9.31849 -9.01176 -8.94316 -8.40361 -8.35471 -7.98271 -6.01590 -4.03899 1.43595 2.69343 2.77212 3.16041 3.29918 3.37425 3.41372 3.55407 3.80783 4.27035 4.44063 4.45710 4.49843 4.57313 4.63239 4.86743 4.93390 4.99077 5.09419 5.18938 5.19837 5.22894 5.33575 5.34644 5.37936 5.47215 5.47592 5.59089 5.66245 5.70090 5.77583 5.81944 5.84041 5.86032 5.89096 5.97887 6.03734 6.13292 6.16303 6.24314 6.29511 6.31718 6.58239 6.81760 6.87669 6.91497 6.92952 7.62277 7.70607 7.74672 7.99061 8.08125 8.37063 8.73326 9.02574 9.59638 11.09642 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007097 B = 0.004882 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3944.315454 B = 5733.670389 C = 8634.132392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.019 3.981 10 C 0.109 3.891 11 N -0.595 5.595 12 C 0.122 3.878 13 C -0.074 4.074 14 C -0.108 4.108 15 C -0.136 4.136 16 C 0.509 3.491 17 O -0.554 6.554 18 C -0.102 4.102 19 C 0.053 3.947 20 N -0.532 5.532 21 C 0.139 3.861 22 C -0.045 4.045 23 C -0.026 4.026 24 N -0.496 5.496 25 C 0.178 3.822 26 O -0.195 6.195 27 C 0.051 3.949 28 C -0.097 4.097 29 H 0.259 0.741 30 H 0.020 0.980 31 H 0.012 0.988 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.050 0.950 44 H 0.108 0.892 45 H 0.055 0.945 46 H 0.181 0.819 47 H 0.248 0.752 48 H 0.078 0.922 49 H 0.041 0.959 50 H 0.078 0.922 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.548 -16.864 10.332 20.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.019 4.019 10 C -0.012 4.012 11 N -0.327 5.327 12 C -0.002 4.002 13 C -0.075 4.075 14 C -0.146 4.146 15 C -0.176 4.176 16 C 0.297 3.703 17 O -0.433 6.433 18 C -0.140 4.140 19 C -0.074 4.074 20 N -0.258 5.258 21 C 0.012 3.988 22 C -0.098 4.098 23 C -0.165 4.165 24 N -0.225 5.225 25 C -0.048 4.048 26 O -0.080 6.080 27 C -0.076 4.076 28 C -0.135 4.135 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.030 0.970 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.125 0.875 45 H 0.074 0.926 46 H 0.199 0.801 47 H 0.264 0.736 48 H 0.096 0.904 49 H 0.059 0.941 50 H 0.096 0.904 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.429 -16.760 9.618 20.365 hybrid contribution 1.504 1.766 0.282 2.337 sum -4.924 -14.994 9.900 18.630 Atomic orbital electron populations 1.69988 1.06011 1.26370 1.50669 1.24981 0.94842 0.99167 0.95208 0.86539 0.80174 0.83769 0.77547 1.19695 1.20956 1.21076 1.21131 0.93036 0.90749 1.50831 0.92578 1.19309 0.94257 0.91044 0.97283 1.21901 0.95767 0.82081 1.01436 1.47436 1.56161 1.24192 1.04914 1.21470 0.96409 0.96192 0.86094 1.20804 0.95382 0.95404 0.95912 1.21636 1.02242 0.97542 0.93174 1.21686 1.01825 0.94954 0.99096 1.19950 0.80665 0.86443 0.83280 1.90719 1.53875 1.62878 1.35779 1.21621 0.95823 0.98622 0.97945 1.22187 1.01384 0.94703 0.89129 1.62231 1.29008 1.31023 1.03527 1.20511 0.92252 0.92473 0.93575 1.23174 0.97962 0.85101 1.03605 1.22991 0.89845 0.99546 1.04168 1.70479 1.34865 1.01444 1.15694 1.28137 0.76212 1.00946 0.99492 1.84579 1.34459 1.29190 1.59798 1.22157 0.89803 0.97154 0.98496 1.21540 1.01611 0.97533 0.92865 0.93145 0.96156 0.96984 0.92244 0.90574 0.92322 0.90531 0.90683 0.91238 0.88527 0.88786 0.90836 0.90945 0.90863 0.93217 0.87450 0.92636 0.80148 0.73610 0.90355 0.94056 0.90361 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.72 5.46 -17.81 -0.10 1.62 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.50 5.29 -27.88 -0.15 0.35 16 10 C 0.11 2.36 5.16 -4.04 -0.02 2.34 16 11 N -0.60 -10.63 2.67 -175.03 -0.47 -11.10 16 12 C 0.12 1.66 4.39 -4.54 -0.02 1.64 16 13 C -0.07 -0.81 0.51 -154.62 -0.08 -0.89 16 14 C -0.11 -1.07 4.93 -26.68 -0.13 -1.20 16 15 C -0.14 -1.77 5.40 -28.10 -0.15 -1.92 16 16 C 0.51 9.39 6.65 -11.87 -0.08 9.31 16 17 O -0.55 -12.93 16.17 5.56 0.09 -12.84 16 18 C -0.10 -1.31 4.19 -26.70 -0.11 -1.42 16 19 C 0.05 0.73 4.75 -3.82 -0.02 0.72 16 20 N -0.53 -5.69 4.80 -236.09 -1.13 -6.82 16 21 C 0.14 1.41 5.83 -4.98 -0.03 1.38 16 22 C -0.04 -0.56 5.05 -35.69 -0.18 -0.74 16 23 C -0.03 -0.32 11.80 -17.77 -0.21 -0.53 16 24 N -0.50 -6.81 11.29 -14.97 -0.17 -6.98 16 25 C 0.18 2.29 13.23 52.09 0.69 2.98 16 26 O -0.19 -2.86 10.02 5.34 0.05 -2.81 16 27 C 0.05 0.45 5.18 -3.82 -0.02 0.43 16 28 C -0.10 -0.80 4.87 -26.71 -0.13 -0.93 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 1.18 8.02 -51.93 -0.42 0.76 16 33 H 0.08 1.79 7.13 -51.93 -0.37 1.42 16 34 H 0.06 0.70 8.11 -51.93 -0.42 0.28 16 35 H 0.08 1.15 5.01 -51.93 -0.26 0.89 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 38 H 0.10 1.22 7.02 -51.93 -0.36 0.86 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.07 1.15 5.93 -51.93 -0.31 0.85 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 1.15 6.03 -51.93 -0.31 0.84 16 43 H 0.05 0.83 6.37 -51.94 -0.33 0.50 16 44 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 46 H 0.18 1.70 8.06 -52.48 -0.42 1.27 16 47 H 0.25 2.23 8.06 -52.49 -0.42 1.81 16 48 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 49 H 0.04 0.40 6.77 -51.93 -0.35 0.05 16 50 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 392.92 15.07 5.92 5.92 Total: -1.00 -35.54 392.92 -9.21 -44.75 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -8.17 Total: 1.06 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -1.05 Total: -2.00 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -1.03 Total: -50.90 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.14 Total: -15.65 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.54 -9.21 -44.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272743528.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.923 kcal (2) G-P(sol) polarization free energy of solvation -35.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds