Wall clock time and date at job start Sat Apr 11 2020 08:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00552 * 2 1 4 4 H 1.48496 * 109.46976 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46861 * 300.00347 * 3 2 1 6 6 H 1.48497 * 109.46977 * 59.99862 * 3 2 1 7 7 C 1.37883 * 119.99315 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99759 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46804 * 180.02562 * 9 7 2 11 11 N 1.46495 * 109.47069 * 180.02562 * 10 9 7 12 12 C 1.45773 * 117.96243 * 270.02329 * 11 10 9 13 13 C 1.52789 * 110.51365 * 161.05598 * 12 11 10 14 14 C 1.53017 * 108.87890 * 50.49072 * 13 12 11 15 15 C 1.53080 * 108.55774 * 292.68537 * 14 13 12 16 16 C 1.33358 * 117.95832 * 89.99600 * 11 10 9 17 17 O 1.21273 * 118.22589 * 2.35796 * 16 11 10 18 18 C 1.52992 * 109.73070 * 290.62386 * 13 12 11 19 19 C 1.53059 * 109.28709 * 297.01847 * 18 13 12 20 20 N 1.46846 * 109.51061 * 300.98810 * 19 18 13 21 21 C 1.46900 * 111.00169 * 185.90930 * 20 19 18 22 22 C 1.50701 * 109.46991 * 45.75230 * 21 20 19 23 23 C 1.34327 * 126.44277 * 89.71112 * 22 21 20 24 24 N 1.34481 * 107.66879 * 179.87711 * 23 22 21 25 25 C 1.30252 * 108.70172 * 0.39887 * 24 23 22 26 26 O 1.33969 * 108.76129 * 359.74946 * 25 24 23 27 27 C 1.46856 * 111.22458 * 61.79214 * 20 19 18 28 28 C 1.52993 * 109.72577 * 170.40149 * 13 12 11 29 29 H 0.96998 * 119.99336 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47096 * 60.00544 * 9 7 2 31 31 H 1.08996 * 109.47504 * 299.99930 * 9 7 2 32 32 H 1.08998 * 109.47127 * 60.00223 * 10 9 7 33 33 H 1.08996 * 109.46755 * 300.00048 * 10 9 7 34 34 H 1.09005 * 109.26727 * 281.32193 * 12 11 10 35 35 H 1.09002 * 109.27051 * 40.81940 * 12 11 10 36 36 H 1.09004 * 109.52318 * 173.00169 * 14 13 12 37 37 H 1.09005 * 109.65287 * 52.44564 * 14 13 12 38 38 H 1.09002 * 109.40012 * 288.70075 * 15 14 13 39 39 H 1.09003 * 109.39573 * 168.88005 * 15 14 13 40 40 H 1.08997 * 109.49977 * 56.96468 * 18 13 12 41 41 H 1.08995 * 109.49828 * 177.07086 * 18 13 12 42 42 H 1.09000 * 109.46402 * 180.98484 * 19 18 13 43 43 H 1.08988 * 109.46472 * 61.00346 * 19 18 13 44 44 H 1.08996 * 109.47176 * 165.75206 * 21 20 19 45 45 H 1.08998 * 109.47218 * 285.75501 * 21 20 19 46 46 H 1.08005 * 126.16434 * 0.02562 * 23 22 21 47 47 H 1.08001 * 125.62347 * 179.73626 * 25 24 23 48 48 H 1.09002 * 109.46247 * 178.19266 * 27 20 19 49 49 H 1.09000 * 109.46028 * 58.21055 * 27 20 19 50 50 H 1.09003 * 109.49405 * 182.91666 * 28 13 12 51 51 H 1.08997 * 109.50007 * 303.03376 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2494 1.6176 0.0000 4 1 3.7093 1.3461 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1943 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 7 1.5124 -4.9309 -0.0012 12 6 1.1697 -5.5229 1.2861 13 6 0.0442 -6.5432 1.1235 14 6 0.4117 -7.5103 -0.0039 15 6 0.4093 -6.7399 -1.3267 16 6 1.2001 -5.4719 -1.1794 17 8 1.5756 -4.9098 -2.1862 18 6 -1.2596 -5.8228 0.7747 19 6 -1.6542 -4.9026 1.9325 20 7 -1.8215 -5.6977 3.1557 21 6 -2.3358 -4.8702 4.2551 22 6 -3.4772 -4.0230 3.7547 23 6 -4.7776 -4.3594 3.7481 24 7 -5.4634 -3.3280 3.2243 25 6 -4.6224 -2.3854 2.9071 26 8 -3.3845 -2.7876 3.2243 27 6 -0.5662 -6.3579 3.5366 28 6 -0.1390 -7.3222 2.4275 29 1 -0.4849 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8903 31 1 0.6245 -2.5571 0.8896 32 1 2.8716 -3.6046 0.8895 33 1 2.8716 -3.6045 -0.8905 34 1 2.0481 -6.0190 1.6991 35 1 0.8464 -4.7371 1.9688 36 1 -0.3223 -8.3151 -0.0473 37 1 1.4036 -7.9245 0.1771 38 1 -0.6169 -6.4966 -1.6022 39 1 0.8566 -7.3572 -2.1059 40 1 -1.1174 -5.2302 -0.1289 41 1 -2.0478 -6.5571 0.6086 42 1 -2.5921 -4.4010 1.6943 43 1 -0.8733 -4.1583 2.0871 44 1 -2.6876 -5.5145 5.0609 45 1 -1.5401 -4.2248 4.6271 46 1 -5.1970 -5.2896 4.1021 47 1 -4.8804 -1.4359 2.4616 48 1 -0.7142 -6.9126 4.4631 49 1 0.2095 -5.6062 3.6832 50 1 -0.9069 -8.0837 2.2915 51 1 0.8022 -7.7986 2.7020 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272743528.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:23:37 Heat of formation + Delta-G solvation = -36.755102 kcal Electronic energy + Delta-G solvation = -32733.532157 eV Core-core repulsion = 28633.091557 eV Total energy + Delta-G solvation = -4100.440601 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.34270 -42.15247 -40.00942 -37.42501 -36.47185 -35.70591 -34.86574 -33.39264 -31.85864 -31.52842 -31.15401 -28.29789 -27.21823 -26.30766 -25.26399 -24.32044 -23.61563 -23.54380 -22.50917 -21.90370 -20.82266 -18.88252 -18.56410 -18.34468 -17.97986 -17.48605 -17.29703 -16.89307 -16.56758 -16.28227 -16.10850 -15.95610 -15.44849 -15.25037 -15.12291 -14.72136 -14.67751 -14.48872 -14.45054 -14.19949 -13.82154 -13.60694 -13.42821 -13.19888 -13.09896 -12.92277 -12.88509 -12.63967 -12.58581 -12.38126 -12.16022 -12.10539 -11.96587 -11.89656 -11.66082 -11.52608 -11.44766 -11.17054 -11.13776 -10.63824 -10.56865 -9.90718 -9.59551 -9.30625 -8.26560 -6.39287 0.45521 1.33841 1.35858 1.48767 1.69459 1.71558 1.86941 2.14001 2.37646 2.92138 3.06215 3.38843 3.52243 3.56045 3.66409 3.71363 3.76901 4.05478 4.07840 4.20193 4.24033 4.29473 4.30895 4.32585 4.44368 4.49695 4.53592 4.55086 4.58646 4.68497 4.74460 4.82077 4.87665 4.88513 4.92586 4.97703 4.98351 5.04226 5.08075 5.16712 5.24997 5.25365 5.30318 5.37270 5.40484 5.47651 5.54871 5.77136 5.89412 6.06414 6.12963 6.61657 6.71112 6.75397 7.26489 7.30237 8.85375 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007097 B = 0.004882 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3944.315454 B = 5733.670389 C = 8634.132392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.003 3.997 3 Si 0.968 3.032 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.038 3.962 10 C 0.124 3.876 11 N -0.594 5.594 12 C 0.115 3.885 13 C -0.067 4.067 14 C -0.098 4.098 15 C -0.128 4.128 16 C 0.498 3.502 17 O -0.616 6.616 18 C -0.097 4.097 19 C 0.066 3.934 20 N -0.521 5.521 21 C 0.138 3.862 22 C -0.057 4.057 23 C -0.028 4.028 24 N -0.516 5.516 25 C 0.167 3.833 26 O -0.226 6.226 27 C 0.045 3.955 28 C -0.088 4.088 29 H 0.264 0.736 30 H -0.031 1.031 31 H -0.008 1.008 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.032 0.968 41 H 0.092 0.908 42 H 0.044 0.956 43 H 0.007 0.993 44 H 0.147 0.853 45 H 0.045 0.955 46 H 0.210 0.790 47 H 0.271 0.729 48 H 0.112 0.888 49 H 0.027 0.973 50 H 0.098 0.902 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.959 -19.880 12.423 23.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.000 4.000 10 C 0.001 3.999 11 N -0.324 5.324 12 C -0.007 4.007 13 C -0.068 4.068 14 C -0.135 4.135 15 C -0.167 4.167 16 C 0.288 3.712 17 O -0.499 6.499 18 C -0.135 4.135 19 C -0.062 4.062 20 N -0.247 5.247 21 C 0.011 3.989 22 C -0.109 4.109 23 C -0.166 4.166 24 N -0.245 5.245 25 C -0.058 4.058 26 O -0.112 6.112 27 C -0.082 4.082 28 C -0.126 4.126 29 H 0.072 0.928 30 H -0.012 1.012 31 H 0.010 0.990 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.129 0.871 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.129 0.871 40 H 0.051 0.949 41 H 0.110 0.890 42 H 0.063 0.937 43 H 0.025 0.975 44 H 0.165 0.835 45 H 0.063 0.937 46 H 0.226 0.774 47 H 0.287 0.713 48 H 0.130 0.870 49 H 0.046 0.954 50 H 0.117 0.883 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.844 -19.822 11.757 23.776 hybrid contribution 1.255 2.759 -0.361 3.052 sum -4.589 -17.063 11.397 21.026 Atomic orbital electron populations 1.70133 1.07842 1.27687 1.51064 1.25990 0.95806 1.03401 0.94348 0.85360 0.79147 0.78438 0.77885 1.18394 1.20589 1.19785 1.21553 0.93567 0.91947 1.51313 0.91949 1.19029 0.94155 0.93096 0.93713 1.21430 0.94634 0.82638 1.01235 1.47487 1.55372 1.22720 1.06843 1.21796 0.98903 0.96505 0.83453 1.20832 0.92553 0.94859 0.98549 1.21675 1.04519 0.97282 0.90015 1.21712 1.00582 0.92396 1.02037 1.21092 0.79976 0.87838 0.82289 1.90680 1.56349 1.65055 1.37791 1.21552 0.97941 0.98359 0.95675 1.21894 0.98338 0.94399 0.91546 1.62326 1.30130 1.29773 1.02429 1.20783 0.91354 0.92694 0.94050 1.23714 0.99107 0.84638 1.03466 1.23445 0.89600 1.00025 1.03551 1.70483 1.35425 1.02213 1.16419 1.28779 0.75719 1.01863 0.99449 1.84578 1.35515 1.30645 1.60479 1.22376 0.88326 0.97095 1.00401 1.21566 1.03749 0.97023 0.90224 0.92772 1.01244 0.99013 0.90099 0.92800 0.89276 0.92588 0.87057 0.89313 0.88425 0.87143 0.94945 0.88977 0.93739 0.97460 0.83526 0.93662 0.77354 0.71340 0.86970 0.95440 0.88346 0.88104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.29 13.29 21.45 0.28 -58.01 16 2 C 0.00 0.17 5.46 84.66 0.46 0.64 16 3 Si 0.97 45.74 29.54 68.60 2.03 47.76 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.55 -32.63 9.11 25.60 0.23 -32.39 16 8 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.04 2.16 5.29 29.85 0.16 2.32 16 10 C 0.12 5.65 5.16 86.38 0.45 6.09 16 11 N -0.59 -22.00 2.67 -826.86 -2.21 -24.21 16 12 C 0.12 3.06 4.39 86.45 0.38 3.44 16 13 C -0.07 -1.30 0.51 -52.25 -0.03 -1.33 16 14 C -0.10 -1.54 4.93 30.63 0.15 -1.39 16 15 C -0.13 -3.17 5.40 29.71 0.16 -3.01 16 16 C 0.50 19.04 6.65 87.71 0.58 19.62 16 17 O -0.62 -30.62 16.17 -3.01 -0.05 -30.67 16 18 C -0.10 -2.49 4.19 30.61 0.13 -2.36 16 19 C 0.07 1.92 4.75 86.33 0.41 2.33 16 20 N -0.52 -10.34 4.80 -900.85 -4.32 -14.66 16 21 C 0.14 2.64 5.83 85.56 0.50 3.14 16 22 C -0.06 -1.43 5.05 24.79 0.13 -1.30 16 23 C -0.03 -0.65 11.80 83.39 0.98 0.33 16 24 N -0.52 -14.40 11.29 -316.06 -3.57 -17.97 16 25 C 0.17 4.56 13.23 130.48 1.73 6.28 16 26 O -0.23 -7.12 10.02 -3.80 -0.04 -7.16 16 27 C 0.04 0.64 5.18 86.33 0.45 1.09 16 28 C -0.09 -1.02 4.87 30.61 0.15 -0.87 16 29 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 30 H -0.03 -2.04 8.14 -2.39 -0.02 -2.06 16 31 H -0.01 -0.51 8.14 -2.39 -0.02 -0.52 16 32 H 0.08 3.30 8.02 -2.39 -0.02 3.29 16 33 H 0.05 2.69 7.13 -2.39 -0.02 2.68 16 34 H 0.09 1.86 8.11 -2.38 -0.02 1.84 16 35 H 0.06 1.75 5.01 -2.39 -0.01 1.74 16 36 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.09 1.17 8.13 -2.38 -0.02 1.15 16 38 H 0.10 2.44 7.02 -2.39 -0.02 2.42 16 39 H 0.11 2.40 8.14 -2.39 -0.02 2.39 16 40 H 0.03 1.08 5.93 -2.39 -0.01 1.07 16 41 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.04 1.52 6.03 -2.39 -0.01 1.50 16 43 H 0.01 0.27 6.37 -2.39 -0.02 0.25 16 44 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.05 0.96 8.08 -2.39 -0.02 0.94 16 46 H 0.21 3.47 8.06 -2.91 -0.02 3.45 16 47 H 0.27 5.30 8.06 -2.91 -0.02 5.27 16 48 H 0.11 0.94 8.12 -2.39 -0.02 0.92 16 49 H 0.03 0.49 6.77 -2.39 -0.02 0.47 16 50 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -86.02 392.92 0.06 -85.96 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.92 Total: 16.32 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 7.02 Total: 2.63 kcal Atomic # 7 Polarization: -105.04 SS G_CDS: -9.82 Total: -114.85 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: -0.09 Total: -37.83 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -86.02 0.06 -85.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272743528.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.200 kcal (2) G-P(sol) polarization free energy of solvation -86.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds