Wall clock time and date at job start Sat Apr 11 2020 08:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99950 * 2 1 4 4 H 1.48493 * 109.46959 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46951 * 299.99719 * 3 2 1 6 6 H 1.48499 * 109.47197 * 59.99366 * 3 2 1 7 7 C 1.37877 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00022 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99590 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.46752 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.46831 * 179.97438 * 10 9 7 12 12 C 1.46768 * 124.35208 * 90.00461 * 11 10 9 13 13 C 1.54488 * 105.48147 * 163.04391 * 12 11 10 14 14 C 1.54566 * 101.73848 * 25.35889 * 13 12 11 15 15 C 1.50453 * 110.38331 * 94.49767 * 14 13 12 16 16 C 1.54616 * 108.87675 * 213.80490 * 15 14 13 17 17 C 1.45910 * 111.47507 * 283.29926 * 16 15 14 18 18 N 1.47696 * 113.03306 * 61.36145 * 17 16 15 19 19 C 1.46899 * 110.99585 * 153.42549 * 18 17 16 20 20 C 1.50699 * 109.47024 * 66.04934 * 19 18 17 21 21 C 1.41377 * 126.80447 * 94.99853 * 20 19 18 22 22 C 1.35448 * 103.98941 * 180.02562 * 21 20 19 23 23 O 1.34044 * 106.44500 * 359.97438 * 22 21 20 24 24 N 1.20922 * 111.56316 * 0.02562 * 23 22 21 25 25 C 1.44278 * 109.47922 * 276.31147 * 18 17 16 26 26 C 1.54065 * 111.79985 * 96.50502 * 25 18 17 27 27 C 1.34451 * 124.34497 * 270.03611 * 11 10 9 28 28 O 1.21275 * 124.96573 * 0.42323 * 27 11 10 29 29 H 0.97008 * 120.00364 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47371 * 60.00147 * 9 7 2 31 31 H 1.09000 * 109.47266 * 299.99265 * 9 7 2 32 32 H 1.08999 * 109.47056 * 59.99962 * 10 9 7 33 33 H 1.08995 * 109.46747 * 300.00125 * 10 9 7 34 34 H 1.09002 * 110.24418 * 44.03839 * 12 11 10 35 35 H 1.09005 * 110.31195 * 282.08110 * 12 11 10 36 36 H 1.09002 * 110.97747 * 267.24616 * 13 12 11 37 37 H 1.09001 * 111.00643 * 143.48433 * 13 12 11 38 38 H 1.08992 * 109.57290 * 93.98267 * 15 14 13 39 39 H 1.09006 * 109.56819 * 333.61857 * 15 14 13 40 40 H 1.09000 * 109.07875 * 162.79101 * 16 15 14 41 41 H 1.08998 * 109.08142 * 43.81497 * 16 15 14 42 42 H 1.09000 * 108.77066 * 300.44451 * 17 16 15 43 43 H 1.08994 * 108.67864 * 182.21729 * 17 16 15 44 44 H 1.09004 * 109.47483 * 306.04672 * 19 18 17 45 45 H 1.08998 * 109.46746 * 186.04575 * 19 18 17 46 46 H 1.08005 * 128.01018 * 0.07558 * 21 20 19 47 47 H 1.08003 * 126.78068 * 180.02562 * 22 21 20 48 48 H 1.09007 * 109.01338 * 217.10877 * 25 18 17 49 49 H 1.09005 * 109.01446 * 335.90869 * 25 18 17 50 50 H 1.08995 * 108.92972 * 198.31329 * 26 25 18 51 51 H 1.09003 * 108.92649 * 79.72729 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5127 -4.9307 0.0012 12 6 1.0983 -5.6483 -1.2102 13 6 0.7702 -7.0850 -0.7465 14 6 0.4087 -6.8610 0.7395 15 6 -1.0788 -6.7009 0.8987 16 6 -1.3545 -5.7039 2.0478 17 6 -1.1576 -6.3255 3.3531 18 7 0.2252 -6.7991 3.5649 19 6 0.5602 -6.8230 4.9950 20 6 -0.2842 -7.8588 5.6915 21 6 0.0760 -9.1972 5.9703 22 6 -1.0111 -9.7046 6.5991 23 8 -1.9101 -8.7124 6.6631 24 7 -1.4899 -7.6985 6.1554 25 6 0.3815 -8.1066 2.9753 26 6 0.9917 -8.0281 1.5628 27 6 1.1332 -5.5870 1.1116 28 8 1.3408 -5.2116 2.2459 29 1 -0.4851 0.8401 -0.0004 30 1 0.6247 -2.5570 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 2.8719 -3.6043 0.8905 33 1 2.8719 -3.6043 -0.8894 34 1 1.9108 -5.6628 -1.9366 35 1 0.2140 -5.1806 -1.6432 36 1 1.6403 -7.7344 -0.8428 37 1 -0.0788 -7.4892 -1.2978 38 1 -1.5264 -7.6657 1.1371 39 1 -1.5059 -6.3173 -0.0279 40 1 -2.3828 -5.3499 1.9733 41 1 -0.6786 -4.8542 1.9522 42 1 -1.8366 -7.1733 3.4438 43 1 -1.4014 -5.5974 4.1267 44 1 0.3653 -5.8428 5.4303 45 1 1.6143 -7.0717 5.1171 46 1 1.0036 -9.6987 5.7369 47 1 -1.1299 -10.7100 6.9754 48 1 1.0326 -8.7072 3.6107 49 1 -0.5948 -8.5877 2.9142 50 1 0.7938 -8.9635 1.0396 51 1 2.0700 -7.8952 1.6504 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272757398.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:23:45 Heat of formation + Delta-G solvation = 35.210468 kcal Electronic energy + Delta-G solvation = -32607.296743 eV Core-core repulsion = 28509.976803 eV Total energy + Delta-G solvation = -4097.319940 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.90839 -42.14887 -39.50102 -37.09909 -36.58107 -35.39523 -34.31696 -33.63880 -32.66129 -32.12508 -30.06330 -28.69178 -27.02145 -26.40854 -25.98990 -24.09066 -23.65308 -23.11594 -22.30336 -21.65796 -20.67956 -19.18359 -18.64282 -18.58237 -18.56423 -17.51728 -17.19419 -16.63673 -16.54437 -16.41273 -16.01707 -15.83607 -15.31497 -14.99163 -14.81187 -14.47400 -14.37572 -14.28804 -14.24444 -13.89612 -13.83013 -13.58978 -13.34829 -13.20192 -13.01753 -12.88235 -12.71232 -12.55364 -12.39089 -12.32261 -12.01787 -11.90652 -11.83180 -11.78429 -11.50671 -11.44587 -11.35502 -11.17456 -11.06341 -10.61287 -10.54561 -10.08484 -9.28855 -9.02953 -8.23563 -6.36406 0.65858 1.28745 1.36680 1.38557 1.51720 2.07489 2.32347 2.47581 2.51715 2.99523 3.09439 3.23328 3.39768 3.60649 3.67165 3.84176 3.96731 4.13563 4.16125 4.22100 4.27562 4.30057 4.35571 4.40813 4.47164 4.50457 4.58071 4.64647 4.71361 4.72913 4.77215 4.77751 4.86308 4.89857 4.93516 4.95683 4.96809 5.05536 5.16637 5.17624 5.18678 5.26310 5.36210 5.43078 5.43967 5.53521 5.68705 5.93674 6.12542 6.20482 6.34959 6.62200 6.80164 7.33065 7.40239 7.70856 8.88482 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013976 B = 0.002956 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.984158 B = 9469.015093 C =10595.925610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.029 3.971 10 C 0.148 3.852 11 N -0.634 5.634 12 C 0.094 3.906 13 C -0.113 4.113 14 C -0.076 4.076 15 C -0.084 4.084 16 C -0.132 4.132 17 C 0.087 3.913 18 N -0.492 5.492 19 C 0.139 3.861 20 C -0.030 4.030 21 C -0.232 4.232 22 C -0.047 4.047 23 O 0.086 5.914 24 N -0.398 5.398 25 C 0.056 3.944 26 C -0.083 4.083 27 C 0.508 3.492 28 O -0.525 6.525 29 H 0.263 0.737 30 H -0.007 1.007 31 H -0.029 1.029 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.041 0.959 42 H 0.033 0.967 43 H 0.033 0.967 44 H 0.060 0.940 45 H 0.107 0.893 46 H 0.196 0.804 47 H 0.262 0.738 48 H 0.081 0.919 49 H 0.039 0.961 50 H 0.105 0.895 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.259 -28.501 4.775 28.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.083 0.917 9 C -0.009 4.009 10 C 0.026 3.974 11 N -0.369 5.369 12 C -0.028 4.028 13 C -0.150 4.150 14 C -0.080 4.080 15 C -0.122 4.122 16 C -0.170 4.170 17 C -0.041 4.041 18 N -0.214 5.214 19 C 0.010 3.990 20 C -0.190 4.190 21 C -0.254 4.254 22 C -0.127 4.127 23 O 0.020 5.980 24 N -0.104 5.104 25 C -0.073 4.073 26 C -0.122 4.122 27 C 0.296 3.704 28 O -0.400 6.400 29 H 0.072 0.928 30 H 0.012 0.988 31 H -0.011 1.011 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.120 0.880 37 H 0.133 0.867 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.078 0.922 45 H 0.126 0.874 46 H 0.213 0.787 47 H 0.278 0.722 48 H 0.099 0.901 49 H 0.057 0.943 50 H 0.123 0.877 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.747 -26.745 5.160 27.248 hybrid contribution 0.126 0.860 0.527 1.017 sum -0.620 -25.884 5.687 26.509 Atomic orbital electron populations 1.70136 1.07996 1.27716 1.51453 1.26029 0.95774 1.03588 0.94487 0.85338 0.79186 0.78367 0.77785 1.18191 1.19822 1.20799 1.21599 0.93666 0.91956 1.50857 0.91703 1.19159 0.94489 0.93274 0.93978 1.21179 0.93654 0.81676 1.00891 1.48718 1.57115 1.22546 1.08494 1.22215 1.00483 0.92817 0.87307 1.22911 1.04432 0.94755 0.92897 1.21096 0.95772 0.93758 0.97377 1.21219 0.93165 0.99842 0.97942 1.20797 1.00678 0.99553 0.96005 1.20607 0.88687 0.98009 0.96750 1.62006 1.23621 1.25435 1.10377 1.20718 0.97730 0.94450 0.86130 1.24951 0.93272 0.98611 1.02192 1.23094 1.03359 0.93227 1.05742 1.26909 0.88144 0.97112 1.00582 1.84803 1.40126 1.15345 1.57694 1.73933 1.14881 1.07578 1.13976 1.22000 1.00067 0.88978 0.96242 1.21976 0.99478 0.96680 0.94028 1.21237 0.78492 0.86478 0.84183 1.90734 1.56104 1.71408 1.21734 0.92810 0.98841 1.01086 0.93255 0.90161 0.89234 0.92678 0.87967 0.86694 0.88931 0.90850 0.92137 0.94016 0.94871 0.94798 0.92178 0.87441 0.78724 0.72197 0.90114 0.94279 0.87671 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.48 13.29 21.45 0.28 -59.19 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.97 45.97 29.54 68.60 2.03 48.00 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 7 C -0.54 -32.33 9.11 25.60 0.23 -32.10 16 8 H 0.06 3.66 7.74 -2.91 -0.02 3.64 16 9 C 0.03 1.65 5.30 29.85 0.16 1.81 16 10 C 0.15 6.68 5.87 86.38 0.51 7.18 16 11 N -0.63 -23.81 2.93 -818.01 -2.40 -26.21 16 12 C 0.09 2.51 7.35 86.83 0.64 3.15 16 13 C -0.11 -2.05 5.94 31.63 0.19 -1.87 16 14 C -0.08 -1.90 0.54 -52.63 -0.03 -1.92 16 15 C -0.08 -2.10 4.91 30.32 0.15 -1.95 16 16 C -0.13 -4.46 5.24 28.97 0.15 -4.31 16 17 C 0.09 2.77 4.07 83.98 0.34 3.11 16 18 N -0.49 -14.41 1.70 -916.60 -1.56 -15.97 16 19 C 0.14 3.80 5.67 85.56 0.49 4.28 16 20 C -0.03 -0.70 5.26 43.58 0.23 -0.47 16 21 C -0.23 -3.35 10.03 22.40 0.22 -3.13 16 22 C -0.05 -0.53 12.30 67.17 0.83 0.30 16 23 O 0.09 1.77 11.20 71.59 0.80 2.57 16 24 N -0.40 -10.63 11.87 -49.55 -0.59 -11.22 16 25 C 0.06 1.18 4.22 87.15 0.37 1.55 16 26 C -0.08 -1.64 4.73 31.38 0.15 -1.49 16 27 C 0.51 18.85 4.90 87.87 0.43 19.28 16 28 O -0.53 -23.65 12.98 -3.02 -0.04 -23.69 16 29 H 0.26 15.68 8.31 -92.70 -0.77 14.90 16 30 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 31 H -0.03 -1.93 8.14 -2.39 -0.02 -1.95 16 32 H 0.05 2.37 7.93 -2.39 -0.02 2.35 16 33 H 0.08 3.23 8.14 -2.39 -0.02 3.22 16 34 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 35 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.10 1.42 7.80 -2.39 -0.02 1.40 16 37 H 0.11 1.45 7.78 -2.39 -0.02 1.43 16 38 H 0.09 1.82 7.21 -2.39 -0.02 1.81 16 39 H 0.07 1.76 7.69 -2.38 -0.02 1.74 16 40 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.04 1.85 5.21 -2.39 -0.01 1.83 16 42 H 0.03 0.98 7.19 -2.39 -0.02 0.96 16 43 H 0.03 1.24 7.63 -2.39 -0.02 1.22 16 44 H 0.06 1.96 7.89 -2.38 -0.02 1.94 16 45 H 0.11 2.57 8.13 -2.39 -0.02 2.56 16 46 H 0.20 1.64 8.02 -2.91 -0.02 1.62 16 47 H 0.26 0.03 8.06 -2.91 -0.02 0.01 16 48 H 0.08 1.41 6.48 -2.38 -0.02 1.40 16 49 H 0.04 0.80 6.54 -2.38 -0.02 0.78 16 50 H 0.10 1.29 8.01 -2.39 -0.02 1.27 16 51 H 0.06 1.24 7.93 -2.39 -0.02 1.22 16 Total: -1.00 -83.44 390.13 4.96 -78.49 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.92 Total: 13.38 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: 5.51 Total: -6.17 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -4.26 Total: -112.58 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: 0.76 Total: -21.12 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -83.44 4.96 -78.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272757398.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.699 kcal (2) G-P(sol) polarization free energy of solvation -83.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds