Wall clock time and date at job start Sat Apr 11 2020 08:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47037 * 179.97438 * 10 9 7 12 12 C 1.46821 * 124.36855 * 89.99815 * 11 10 9 13 13 C 1.54603 * 105.49289 * 196.87679 * 12 11 10 14 14 C 1.54107 * 101.62832 * 335.01648 * 13 12 11 15 15 C 1.54413 * 109.08445 * 266.94000 * 14 13 12 16 16 C 1.46018 * 111.19466 * 160.67954 * 15 14 13 17 17 C 1.53893 * 112.70065 * 61.23017 * 16 15 14 18 18 N 1.44261 * 108.28464 * 278.09087 * 17 16 15 19 19 C 1.46899 * 111.00275 * 221.60456 * 18 17 16 20 20 C 1.50695 * 109.47170 * 66.04541 * 19 18 17 21 21 N 1.30256 * 125.62104 * 89.69163 * 20 19 18 22 22 C 1.34480 * 108.70179 * 179.83595 * 21 20 19 23 23 C 1.34332 * 107.66757 * 0.43123 * 22 21 20 24 24 O 1.33971 * 125.62049 * 270.00027 * 20 19 18 25 25 C 1.48038 * 113.62605 * 95.66516 * 18 17 16 26 26 C 1.50283 * 111.39014 * 145.81759 * 14 13 12 27 27 C 1.34608 * 124.36067 * 269.69707 * 11 10 9 28 28 O 1.21280 * 125.04110 * 359.35192 * 27 11 10 29 29 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 31 31 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 32 32 H 1.09004 * 109.46733 * 299.99896 * 10 9 7 33 33 H 1.08996 * 109.47407 * 59.99213 * 10 9 7 34 34 H 1.08997 * 110.24204 * 315.88080 * 12 11 10 35 35 H 1.09002 * 110.24549 * 77.78753 * 12 11 10 36 36 H 1.09004 * 110.99347 * 93.10201 * 13 12 11 37 37 H 1.08992 * 110.99551 * 216.89169 * 13 12 11 38 38 H 1.08995 * 109.13739 * 281.12639 * 15 14 13 39 39 H 1.09004 * 109.13481 * 40.24515 * 15 14 13 40 40 H 1.09003 * 108.83654 * 182.05346 * 16 15 14 41 41 H 1.08998 * 108.84274 * 300.49957 * 16 15 14 42 42 H 1.09000 * 109.70284 * 37.79000 * 17 16 15 43 43 H 1.09003 * 109.70812 * 158.39707 * 17 16 15 44 44 H 1.08997 * 109.46977 * 186.04617 * 19 18 17 45 45 H 1.09005 * 109.47031 * 306.04691 * 19 18 17 46 46 H 1.08005 * 126.16235 * 180.16476 * 22 21 20 47 47 H 1.08000 * 126.44079 * 179.77086 * 23 22 21 48 48 H 1.09001 * 108.73199 * 79.30891 * 25 18 17 49 49 H 1.09001 * 108.73203 * 197.50040 * 25 18 17 50 50 H 1.09002 * 108.81948 * 333.48953 * 26 14 13 51 51 H 1.08997 * 108.82905 * 91.79858 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0014 11 7 5.4864 -2.6367 -0.0014 12 6 6.3152 -2.6379 1.2105 13 6 7.7252 -2.2050 0.7469 14 6 7.7055 -2.6206 -0.7370 15 6 8.2933 -4.0423 -0.8708 16 6 7.8963 -4.6609 -2.1325 17 6 8.3966 -3.8797 -3.3604 18 7 7.4850 -2.7887 -3.6049 19 6 7.2214 -2.6348 -5.0418 20 6 6.4778 -3.8437 -5.5484 21 7 5.1827 -3.9802 -5.5784 22 6 4.8881 -5.1853 -6.0974 23 6 6.0475 -5.8012 -6.3819 24 8 7.0398 -4.9575 -6.0366 25 6 7.9193 -1.5069 -3.0050 26 6 8.4980 -1.6654 -1.5843 27 6 6.2461 -2.6416 -1.1126 28 8 5.8194 -2.6577 -2.2478 29 1 -0.4850 0.8401 0.0004 30 1 3.8751 -0.6798 -0.8895 31 1 3.8745 -0.6809 0.8904 32 1 3.6577 -3.1515 0.8880 33 1 3.6583 -3.1496 -0.8919 34 1 5.9222 -1.9266 1.9369 35 1 6.3496 -3.6378 1.6430 36 1 7.8562 -1.1277 0.8490 37 1 8.4987 -2.7439 1.2938 38 1 9.3808 -3.9848 -0.8276 39 1 7.9358 -4.6560 -0.0440 40 1 8.3001 -5.6727 -2.1707 41 1 6.8084 -4.7151 -2.1711 42 1 9.3948 -3.4878 -3.1649 43 1 8.4233 -4.5378 -4.2289 44 1 6.6186 -1.7419 -5.2070 45 1 8.1666 -2.5393 -5.5764 46 1 3.8978 -5.5874 -6.2529 47 1 6.1626 -6.7870 -6.8078 48 1 8.6805 -1.0609 -3.6452 49 1 7.0631 -0.8339 -2.9592 50 1 8.5089 -0.6899 -1.0981 51 1 9.5226 -2.0295 -1.6604 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272803826.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:23:51 Heat of formation + Delta-G solvation = 32.379142 kcal Electronic energy + Delta-G solvation = -33066.219615 eV Core-core repulsion = 28968.776900 eV Total energy + Delta-G solvation = -4097.442715 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.20195 -41.07398 -38.00651 -35.83354 -35.02779 -34.56271 -33.24649 -32.56553 -31.36146 -30.26334 -28.68290 -27.27169 -25.81626 -25.14769 -24.57843 -22.47917 -22.30168 -21.49969 -21.11834 -20.30519 -19.81020 -18.10181 -17.44057 -16.96830 -16.77966 -16.15494 -15.79583 -15.55102 -15.29694 -15.16190 -14.55702 -14.37143 -14.06576 -13.90510 -13.71062 -13.30792 -13.26468 -13.03113 -12.93148 -12.78899 -12.71515 -12.59120 -12.24873 -11.94791 -11.83778 -11.57090 -11.39585 -11.22430 -11.12056 -10.90982 -10.90218 -10.73805 -10.44040 -10.30751 -10.30024 -10.28025 -9.91266 -9.77651 -9.20756 -8.85708 -8.76918 -8.48040 -7.86031 -7.61503 -5.99035 -3.96760 1.51188 2.74005 2.87099 3.33412 3.34477 3.42395 3.48737 3.72332 3.97088 4.18342 4.40095 4.51056 4.56040 4.68103 4.85021 4.94438 4.99906 5.06373 5.11164 5.19090 5.22525 5.24470 5.35005 5.35932 5.43784 5.53954 5.55416 5.62656 5.72073 5.79041 5.82634 5.83607 5.91696 5.94945 5.96118 5.99588 6.03923 6.14634 6.21752 6.24209 6.39406 6.47496 6.49511 6.76104 7.08051 7.10037 7.32076 7.35357 7.53389 7.84619 7.93179 7.96234 8.56957 9.03494 9.07682 9.63648 11.14428 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009935 B = 0.004058 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.746510 B = 6898.663017 C = 8428.204874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.880 3.120 4 H -0.279 1.279 5 H -0.265 1.265 6 H -0.288 1.288 7 C -0.517 4.517 8 H 0.072 0.928 9 C -0.021 4.021 10 C 0.142 3.858 11 N -0.625 5.625 12 C 0.104 3.896 13 C -0.126 4.126 14 C -0.089 4.089 15 C -0.089 4.089 16 C -0.122 4.122 17 C 0.059 3.941 18 N -0.496 5.496 19 C 0.161 3.839 20 C 0.208 3.792 21 N -0.453 5.453 22 C -0.040 4.040 23 C -0.090 4.090 24 O -0.212 6.212 25 C 0.077 3.923 26 C -0.096 4.096 27 C 0.510 3.490 28 O -0.457 6.457 29 H 0.262 0.738 30 H 0.020 0.980 31 H 0.009 0.991 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.080 0.920 42 H 0.039 0.961 43 H 0.064 0.936 44 H 0.113 0.887 45 H 0.051 0.949 46 H 0.180 0.820 47 H 0.210 0.790 48 H 0.028 0.972 49 H 0.081 0.919 50 H 0.074 0.926 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.450 -9.518 -6.141 26.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.190 1.190 6 H -0.214 1.214 7 C -0.556 4.556 8 H 0.091 0.909 9 C -0.060 4.060 10 C 0.022 3.978 11 N -0.361 5.361 12 C -0.020 4.020 13 C -0.163 4.163 14 C -0.093 4.093 15 C -0.127 4.127 16 C -0.160 4.160 17 C -0.069 4.069 18 N -0.222 5.222 19 C 0.032 3.968 20 C 0.000 4.000 21 N -0.182 5.182 22 C -0.179 4.179 23 C -0.161 4.161 24 O -0.099 6.099 25 C -0.050 4.050 26 C -0.135 4.135 27 C 0.294 3.706 28 O -0.326 6.326 29 H 0.072 0.928 30 H 0.038 0.962 31 H 0.027 0.973 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.131 0.869 45 H 0.069 0.931 46 H 0.197 0.803 47 H 0.227 0.773 48 H 0.046 0.954 49 H 0.099 0.901 50 H 0.092 0.908 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 22.170 -9.066 -6.349 24.779 hybrid contribution 1.288 0.331 -0.344 1.373 sum 23.457 -8.735 -6.692 25.910 Atomic orbital electron populations 1.69915 1.06269 1.26821 1.51229 1.24969 0.94675 0.99059 0.94496 0.86769 0.80540 0.83692 0.78262 1.20450 1.19008 1.21399 1.21002 0.89129 0.94589 1.50838 0.90948 1.19858 0.97012 0.92640 0.96457 1.21419 0.75040 0.99656 1.01684 1.48640 1.07050 1.74213 1.06222 1.21931 0.90314 1.00869 0.88931 1.22730 0.96999 1.01999 0.94601 1.20911 0.95979 0.96880 0.95527 1.20496 0.99827 0.93958 0.98389 1.20559 1.03678 0.97686 0.94050 1.21845 0.93476 0.93356 0.98239 1.61013 1.46841 1.05239 1.09125 1.20291 0.97139 0.90471 0.88876 1.26158 0.88115 0.88545 0.97171 1.70567 1.13012 1.18603 1.15989 1.23450 1.00055 0.91929 1.02418 1.24901 0.86298 0.97490 1.07390 1.84419 1.38650 1.24991 1.61871 1.22303 0.98701 0.90352 0.93636 1.21279 0.98415 0.99266 0.94495 1.20224 0.87661 0.77474 0.85192 1.90941 1.76764 1.46138 1.18762 0.92777 0.96154 0.97297 0.91815 0.90763 0.90814 0.92187 0.90309 0.89902 0.91907 0.91843 0.92769 0.90167 0.94236 0.91784 0.86915 0.93093 0.80261 0.77318 0.95403 0.90083 0.90752 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.55 13.96 55.43 0.77 -27.77 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 22.55 27.47 -169.99 -4.67 17.88 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.27 -6.69 6.54 56.52 0.37 -6.32 16 6 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 7 C -0.52 -15.20 9.66 -34.44 -0.33 -15.53 16 8 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 9 C -0.02 -0.53 4.37 -27.88 -0.12 -0.65 16 10 C 0.14 3.02 5.88 -4.04 -0.02 2.99 16 11 N -0.63 -10.95 2.94 -172.48 -0.51 -11.45 16 12 C 0.10 1.36 7.30 -3.02 -0.02 1.33 16 13 C -0.13 -1.31 6.09 -25.31 -0.15 -1.46 16 14 C -0.09 -1.08 0.57 -155.69 -0.09 -1.17 16 15 C -0.09 -0.94 4.30 -29.30 -0.13 -1.07 16 16 C -0.12 -1.48 5.17 -29.58 -0.15 -1.64 16 17 C 0.06 0.69 5.10 -4.77 -0.02 0.67 16 18 N -0.50 -6.66 1.20 -235.89 -0.28 -6.94 16 19 C 0.16 2.06 5.45 -4.98 -0.03 2.03 16 20 C 0.21 3.06 7.05 -12.95 -0.09 2.97 16 21 N -0.45 -7.74 11.29 -11.10 -0.13 -7.86 16 22 C -0.04 -0.53 11.89 -17.77 -0.21 -0.75 16 23 C -0.09 -0.99 12.18 29.35 0.36 -0.64 16 24 O -0.21 -2.76 9.67 5.36 0.05 -2.71 16 25 C 0.08 0.94 4.43 -2.56 -0.01 0.92 16 26 C -0.10 -1.03 4.78 -27.45 -0.13 -1.16 16 27 C 0.51 8.68 5.50 -11.05 -0.06 8.62 16 28 O -0.46 -9.16 11.48 5.56 0.06 -9.10 16 29 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 30 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 31 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.07 1.72 7.92 -51.93 -0.41 1.31 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.79 7.50 -51.93 -0.39 0.40 16 37 H 0.08 0.65 7.85 -51.93 -0.41 0.24 16 38 H 0.06 0.54 7.64 -51.93 -0.40 0.14 16 39 H 0.06 0.66 7.94 -51.93 -0.41 0.25 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.30 6.22 -51.93 -0.32 0.98 16 42 H 0.04 0.40 6.76 -51.93 -0.35 0.04 16 43 H 0.06 0.76 5.93 -51.93 -0.31 0.45 16 44 H 0.11 1.49 8.04 -51.93 -0.42 1.08 16 45 H 0.05 0.51 8.12 -51.93 -0.42 0.09 16 46 H 0.18 1.95 8.06 -52.48 -0.42 1.53 16 47 H 0.21 1.33 8.06 -52.49 -0.42 0.91 16 48 H 0.03 0.28 8.02 -51.93 -0.42 -0.14 16 49 H 0.08 1.21 7.51 -51.93 -0.39 0.82 16 50 H 0.07 0.74 7.40 -51.93 -0.38 0.36 16 51 H 0.06 0.57 6.71 -51.93 -0.35 0.22 16 LS Contribution 387.24 15.07 5.84 5.84 Total: -1.00 -36.17 387.24 -8.45 -44.62 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -8.27 Total: 0.05 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -1.32 Total: -2.55 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.14 Total: -54.03 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.12 Total: -11.80 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.67 Total: 17.88 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.17 -8.45 -44.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272803826.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.999 kcal (2) G-P(sol) polarization free energy of solvation -36.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds