Wall clock time and date at job start Sat Apr 11 2020 08:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47037 * 179.97438 * 10 9 7 12 12 C 1.46821 * 124.36855 * 89.99815 * 11 10 9 13 13 C 1.54603 * 105.49289 * 196.87679 * 12 11 10 14 14 C 1.54107 * 101.62832 * 335.01648 * 13 12 11 15 15 C 1.54413 * 109.08445 * 266.94000 * 14 13 12 16 16 C 1.46018 * 111.19466 * 160.67954 * 15 14 13 17 17 C 1.53893 * 112.70065 * 61.23017 * 16 15 14 18 18 N 1.44261 * 108.28464 * 278.09087 * 17 16 15 19 19 C 1.46899 * 111.00275 * 221.60456 * 18 17 16 20 20 C 1.50695 * 109.47170 * 66.04541 * 19 18 17 21 21 N 1.30256 * 125.62104 * 89.69163 * 20 19 18 22 22 C 1.34480 * 108.70179 * 179.83595 * 21 20 19 23 23 C 1.34332 * 107.66757 * 0.43123 * 22 21 20 24 24 O 1.33971 * 125.62049 * 270.00027 * 20 19 18 25 25 C 1.48038 * 113.62605 * 95.66516 * 18 17 16 26 26 C 1.50283 * 111.39014 * 145.81759 * 14 13 12 27 27 C 1.34608 * 124.36067 * 269.69707 * 11 10 9 28 28 O 1.21280 * 125.04110 * 359.35192 * 27 11 10 29 29 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 31 31 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 32 32 H 1.09004 * 109.46733 * 299.99896 * 10 9 7 33 33 H 1.08996 * 109.47407 * 59.99213 * 10 9 7 34 34 H 1.08997 * 110.24204 * 315.88080 * 12 11 10 35 35 H 1.09002 * 110.24549 * 77.78753 * 12 11 10 36 36 H 1.09004 * 110.99347 * 93.10201 * 13 12 11 37 37 H 1.08992 * 110.99551 * 216.89169 * 13 12 11 38 38 H 1.08995 * 109.13739 * 281.12639 * 15 14 13 39 39 H 1.09004 * 109.13481 * 40.24515 * 15 14 13 40 40 H 1.09003 * 108.83654 * 182.05346 * 16 15 14 41 41 H 1.08998 * 108.84274 * 300.49957 * 16 15 14 42 42 H 1.09000 * 109.70284 * 37.79000 * 17 16 15 43 43 H 1.09003 * 109.70812 * 158.39707 * 17 16 15 44 44 H 1.08997 * 109.46977 * 186.04617 * 19 18 17 45 45 H 1.09005 * 109.47031 * 306.04691 * 19 18 17 46 46 H 1.08005 * 126.16235 * 180.16476 * 22 21 20 47 47 H 1.08000 * 126.44079 * 179.77086 * 23 22 21 48 48 H 1.09001 * 108.73199 * 79.30891 * 25 18 17 49 49 H 1.09001 * 108.73203 * 197.50040 * 25 18 17 50 50 H 1.09002 * 108.81948 * 333.48953 * 26 14 13 51 51 H 1.08997 * 108.82905 * 91.79858 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0014 11 7 5.4864 -2.6367 -0.0014 12 6 6.3152 -2.6379 1.2105 13 6 7.7252 -2.2050 0.7469 14 6 7.7055 -2.6206 -0.7370 15 6 8.2933 -4.0423 -0.8708 16 6 7.8963 -4.6609 -2.1325 17 6 8.3966 -3.8797 -3.3604 18 7 7.4850 -2.7887 -3.6049 19 6 7.2214 -2.6348 -5.0418 20 6 6.4778 -3.8437 -5.5484 21 7 5.1827 -3.9802 -5.5784 22 6 4.8881 -5.1853 -6.0974 23 6 6.0475 -5.8012 -6.3819 24 8 7.0398 -4.9575 -6.0366 25 6 7.9193 -1.5069 -3.0050 26 6 8.4980 -1.6654 -1.5843 27 6 6.2461 -2.6416 -1.1126 28 8 5.8194 -2.6577 -2.2478 29 1 -0.4850 0.8401 0.0004 30 1 3.8751 -0.6798 -0.8895 31 1 3.8745 -0.6809 0.8904 32 1 3.6577 -3.1515 0.8880 33 1 3.6583 -3.1496 -0.8919 34 1 5.9222 -1.9266 1.9369 35 1 6.3496 -3.6378 1.6430 36 1 7.8562 -1.1277 0.8490 37 1 8.4987 -2.7439 1.2938 38 1 9.3808 -3.9848 -0.8276 39 1 7.9358 -4.6560 -0.0440 40 1 8.3001 -5.6727 -2.1707 41 1 6.8084 -4.7151 -2.1711 42 1 9.3948 -3.4878 -3.1649 43 1 8.4233 -4.5378 -4.2289 44 1 6.6186 -1.7419 -5.2070 45 1 8.1666 -2.5393 -5.5764 46 1 3.8978 -5.5874 -6.2529 47 1 6.1626 -6.7870 -6.8078 48 1 8.6805 -1.0609 -3.6452 49 1 7.0631 -0.8339 -2.9592 50 1 8.5089 -0.6899 -1.0981 51 1 9.5226 -2.0295 -1.6604 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272803826.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:23:50 Heat of formation + Delta-G solvation = 6.878628 kcal Electronic energy + Delta-G solvation = -33067.325400 eV Core-core repulsion = 28968.776900 eV Total energy + Delta-G solvation = -4098.548500 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.22568 -42.13642 -39.07441 -37.08183 -36.38646 -35.66790 -35.02889 -33.74495 -32.80632 -31.55587 -29.98739 -28.23619 -27.08854 -26.53998 -25.66583 -23.52296 -23.43650 -22.96842 -22.16678 -21.64169 -20.85684 -19.39704 -18.93557 -18.40683 -17.90967 -17.26585 -16.87239 -16.69375 -16.36700 -16.31618 -16.21143 -15.74682 -15.24650 -14.95173 -14.81288 -14.76289 -14.50236 -14.24597 -14.22713 -13.99502 -13.94636 -13.71120 -13.57486 -13.23557 -12.97520 -12.85012 -12.77395 -12.40979 -12.32075 -12.24141 -12.04834 -11.93637 -11.78944 -11.72677 -11.63161 -11.51187 -11.40611 -11.27795 -11.15560 -10.80694 -10.00904 -9.83978 -9.27133 -8.57256 -8.33850 -6.38365 0.52986 1.28517 1.33448 1.45624 1.74118 1.85770 2.09973 2.32265 2.40872 3.01198 3.04809 3.24123 3.44351 3.69445 3.81071 3.96777 4.07217 4.08766 4.15911 4.22315 4.28961 4.32559 4.35932 4.40135 4.45158 4.50595 4.58714 4.68396 4.68762 4.75829 4.81771 4.83390 4.87923 4.92083 4.99768 5.02088 5.08474 5.12552 5.18421 5.19185 5.23746 5.32440 5.36582 5.37466 5.41957 5.53216 5.54741 5.95488 6.19313 6.22235 6.49684 6.65506 6.68146 6.90576 7.26116 7.77155 8.83055 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009935 B = 0.004058 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.746510 B = 6898.663017 C = 8428.204874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.009 3.991 3 Si 0.952 3.048 4 H -0.255 1.255 5 H -0.261 1.261 6 H -0.282 1.282 7 C -0.533 4.533 8 H 0.033 0.967 9 C -0.006 4.006 10 C 0.157 3.843 11 N -0.638 5.638 12 C 0.094 3.906 13 C -0.112 4.112 14 C -0.081 4.081 15 C -0.085 4.085 16 C -0.117 4.117 17 C 0.064 3.936 18 N -0.521 5.521 19 C 0.162 3.838 20 C 0.199 3.801 21 N -0.511 5.511 22 C -0.077 4.077 23 C -0.064 4.064 24 O -0.211 6.211 25 C 0.077 3.923 26 C -0.096 4.096 27 C 0.494 3.506 28 O -0.498 6.498 29 H 0.268 0.732 30 H -0.002 1.002 31 H 0.024 0.976 32 H 0.073 0.927 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.123 0.877 38 H 0.101 0.899 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.028 0.972 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.193 0.807 47 H 0.260 0.740 48 H 0.053 0.947 49 H 0.039 0.961 50 H 0.083 0.917 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.447 -9.446 -5.042 30.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.188 4.188 3 Si 0.776 3.224 4 H -0.179 1.179 5 H -0.186 1.186 6 H -0.207 1.207 7 C -0.572 4.572 8 H 0.051 0.949 9 C -0.044 4.044 10 C 0.035 3.965 11 N -0.374 5.374 12 C -0.028 4.028 13 C -0.149 4.149 14 C -0.084 4.084 15 C -0.123 4.123 16 C -0.155 4.155 17 C -0.064 4.064 18 N -0.247 5.247 19 C 0.033 3.967 20 C -0.009 4.009 21 N -0.241 5.241 22 C -0.215 4.215 23 C -0.134 4.134 24 O -0.098 6.098 25 C -0.049 4.049 26 C -0.134 4.134 27 C 0.281 3.719 28 O -0.369 6.369 29 H 0.077 0.923 30 H 0.017 0.983 31 H 0.042 0.958 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.141 0.859 38 H 0.119 0.881 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.047 0.953 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.112 0.888 45 H 0.100 0.900 46 H 0.210 0.790 47 H 0.275 0.725 48 H 0.071 0.929 49 H 0.058 0.942 50 H 0.102 0.898 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 27.203 -9.011 -5.223 29.128 hybrid contribution -0.416 0.159 -0.757 0.878 sum 26.786 -8.852 -5.980 28.838 Atomic orbital electron populations 1.70061 1.08167 1.28242 1.52337 1.25950 0.95612 1.03367 0.93848 0.85630 0.78956 0.78325 0.79533 1.17916 1.18584 1.20730 1.21320 0.91584 0.93381 1.50871 0.94860 1.19655 0.93999 0.95026 0.95746 1.20868 0.78443 0.96858 1.00372 1.48750 1.05439 1.74512 1.08679 1.22260 0.91303 1.02158 0.87124 1.22792 0.95879 1.03060 0.93158 1.20912 0.91891 0.98648 0.96993 1.20538 1.01891 0.92525 0.97326 1.20527 1.00368 0.99022 0.95604 1.21828 0.94258 0.92617 0.97677 1.60778 1.48356 1.06248 1.09308 1.20313 0.97875 0.89081 0.89390 1.26427 0.87752 0.89407 0.97286 1.70504 1.14844 1.20917 1.17865 1.23823 1.01883 0.91715 1.04069 1.25763 0.84889 0.98134 1.04602 1.84430 1.38937 1.24792 1.61631 1.22259 0.97762 0.89370 0.95518 1.21362 0.99546 0.99603 0.92849 1.21293 0.90044 0.76133 0.84410 1.90932 1.78154 1.47367 1.20478 0.92335 0.98315 0.95798 0.90909 0.94339 0.90911 0.90390 0.89534 0.85894 0.88051 0.91521 0.91379 0.95299 0.91396 0.92424 0.88827 0.90022 0.79045 0.72465 0.92863 0.94244 0.89820 0.88137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.94 13.96 21.45 0.30 -61.64 16 2 C 0.01 0.58 5.47 84.66 0.46 1.05 16 3 Si 0.95 47.13 27.47 68.60 1.88 49.01 16 4 H -0.25 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.26 -12.68 6.54 99.48 0.65 -12.03 16 6 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 7 C -0.53 -32.93 9.66 25.60 0.25 -32.68 16 8 H 0.03 2.24 7.99 -2.91 -0.02 2.22 16 9 C -0.01 -0.30 4.37 29.85 0.13 -0.17 16 10 C 0.16 7.01 5.88 86.38 0.51 7.52 16 11 N -0.64 -22.47 2.94 -818.08 -2.40 -24.87 16 12 C 0.09 2.23 7.30 86.86 0.63 2.87 16 13 C -0.11 -1.82 6.09 31.51 0.19 -1.63 16 14 C -0.08 -1.71 0.57 -52.94 -0.03 -1.74 16 15 C -0.09 -1.47 4.30 28.93 0.12 -1.34 16 16 C -0.12 -2.64 5.17 28.75 0.15 -2.49 16 17 C 0.06 1.36 5.10 87.10 0.44 1.80 16 18 N -0.52 -13.84 1.20 -900.22 -1.08 -14.92 16 19 C 0.16 4.25 5.45 85.56 0.47 4.71 16 20 C 0.20 6.08 7.05 88.34 0.62 6.71 16 21 N -0.51 -18.74 11.29 -303.82 -3.43 -22.17 16 22 C -0.08 -2.18 11.89 83.39 0.99 -1.18 16 23 C -0.06 -1.35 12.18 66.93 0.81 -0.53 16 24 O -0.21 -5.38 9.67 -3.74 -0.04 -5.41 16 25 C 0.08 1.80 4.43 86.50 0.38 2.18 16 26 C -0.10 -1.69 4.78 30.13 0.14 -1.54 16 27 C 0.49 16.94 5.50 87.69 0.48 17.42 16 28 O -0.50 -21.16 11.48 -3.03 -0.03 -21.19 16 29 H 0.27 16.22 8.31 -92.70 -0.77 15.45 16 30 H 0.00 -0.09 7.20 -2.39 -0.02 -0.10 16 31 H 0.02 1.15 7.57 -2.39 -0.02 1.14 16 32 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 33 H 0.04 1.95 7.92 -2.39 -0.02 1.93 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.09 1.33 7.50 -2.39 -0.02 1.31 16 37 H 0.12 1.12 7.85 -2.39 -0.02 1.10 16 38 H 0.10 1.07 7.64 -2.39 -0.02 1.05 16 39 H 0.07 1.13 7.94 -2.38 -0.02 1.11 16 40 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.03 0.95 6.22 -2.39 -0.01 0.94 16 42 H 0.07 1.04 6.76 -2.39 -0.02 1.03 16 43 H 0.06 1.27 5.93 -2.39 -0.01 1.26 16 44 H 0.09 2.72 8.04 -2.39 -0.02 2.70 16 45 H 0.08 1.56 8.12 -2.38 -0.02 1.54 16 46 H 0.19 4.48 8.06 -2.91 -0.02 4.46 16 47 H 0.26 2.48 8.06 -2.91 -0.02 2.46 16 48 H 0.05 0.94 8.02 -2.39 -0.02 0.92 16 49 H 0.04 1.22 7.51 -2.39 -0.02 1.20 16 50 H 0.08 1.34 7.40 -2.39 -0.02 1.32 16 51 H 0.10 1.12 6.71 -2.39 -0.02 1.11 16 Total: -1.00 -87.20 387.24 2.83 -84.37 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.86 Total: 15.87 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 6.77 Total: 0.95 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -6.61 Total: -123.59 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.07 Total: -26.61 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.88 Total: 49.01 kcal Total: -87.20 2.83 -84.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272803826.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.251 kcal (2) G-P(sol) polarization free energy of solvation -87.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds