Wall clock time and date at job start Sat Apr 11 2020 08:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86797 * 120.00016 * 2 1 4 4 H 1.48495 * 109.47447 * 270.00221 * 3 2 1 5 5 H 1.48507 * 109.47093 * 30.00367 * 3 2 1 6 6 H 1.48497 * 109.47152 * 149.99807 * 3 2 1 7 7 C 1.37873 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99774 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00371 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47094 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46853 * 180.02562 * 10 9 7 12 12 C 1.46777 * 124.35175 * 90.00603 * 11 10 9 13 13 C 1.54480 * 105.46890 * 163.01608 * 12 11 10 14 14 C 1.54578 * 101.73166 * 25.40027 * 13 12 11 15 15 C 1.50455 * 110.34292 * 94.45235 * 14 13 12 16 16 C 1.54602 * 108.88821 * 213.67323 * 15 14 13 17 17 C 1.45892 * 111.48756 * 283.30500 * 16 15 14 18 18 N 1.47706 * 113.04895 * 61.38677 * 17 16 15 19 19 C 1.46896 * 110.99906 * 153.45422 * 18 17 16 20 20 C 1.50701 * 109.47277 * 66.04284 * 19 18 17 21 21 N 1.30254 * 125.61664 * 90.03886 * 20 19 18 22 22 C 1.34473 * 108.70205 * 179.97438 * 21 20 19 23 23 C 1.34334 * 107.66757 * 359.97438 * 22 21 20 24 24 O 1.33963 * 125.62324 * 269.99911 * 20 19 18 25 25 C 1.44288 * 109.44006 * 276.31586 * 18 17 16 26 26 C 1.54072 * 111.81965 * 96.49451 * 25 18 17 27 27 C 1.34462 * 124.35298 * 270.00024 * 11 10 9 28 28 O 1.21285 * 124.95842 * 0.36090 * 27 11 10 29 29 H 0.96993 * 119.99827 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46633 * 60.00374 * 9 7 2 31 31 H 1.09002 * 109.47254 * 300.00261 * 9 7 2 32 32 H 1.09002 * 109.47008 * 60.00686 * 10 9 7 33 33 H 1.09002 * 109.47351 * 300.00284 * 10 9 7 34 34 H 1.09000 * 110.24275 * 44.01087 * 12 11 10 35 35 H 1.09000 * 110.24220 * 282.01518 * 12 11 10 36 36 H 1.09000 * 110.97963 * 267.28659 * 13 12 11 37 37 H 1.09008 * 110.97487 * 143.51154 * 13 12 11 38 38 H 1.09006 * 109.57036 * 93.85389 * 15 14 13 39 39 H 1.09001 * 109.66643 * 333.55751 * 15 14 13 40 40 H 1.09000 * 109.07550 * 162.78560 * 16 15 14 41 41 H 1.09000 * 109.02052 * 43.79140 * 16 15 14 42 42 H 1.08998 * 108.77008 * 300.45910 * 17 16 15 43 43 H 1.09001 * 108.67326 * 182.23866 * 17 16 15 44 44 H 1.08997 * 109.47239 * 306.04552 * 19 18 17 45 45 H 1.09002 * 109.47073 * 186.04455 * 19 18 17 46 46 H 1.08003 * 126.16912 * 180.26138 * 22 21 20 47 47 H 1.08001 * 126.44328 * 180.02562 * 23 22 21 48 48 H 1.09003 * 109.01285 * 217.09633 * 25 18 17 49 49 H 1.09004 * 109.01358 * 335.88679 * 25 18 17 50 50 H 1.09002 * 108.93156 * 198.29290 * 26 25 18 51 51 H 1.09000 * 108.85712 * 79.65661 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 7 1.5127 -4.9308 -0.0024 12 6 1.0982 -5.6472 -1.2146 13 6 0.7709 -7.0844 -0.7521 14 6 0.4089 -6.8616 0.7341 15 6 -1.0788 -6.7017 0.8917 16 6 -1.3561 -5.7082 2.0433 17 6 -1.1612 -6.3334 3.3470 18 7 0.2214 -6.8074 3.5601 19 6 0.5534 -6.8359 4.9908 20 6 -0.2922 -7.8742 5.6822 21 7 0.0261 -9.1268 5.8437 22 6 -0.9704 -9.7433 6.5034 23 6 -1.9236 -8.8291 6.7489 24 8 -1.4947 -7.6607 6.2327 25 6 0.3782 -8.1132 2.9667 26 6 0.9906 -8.0310 1.5553 27 6 1.1338 -5.5887 1.1073 28 8 1.3431 -5.2154 2.2421 29 1 -0.4849 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8904 31 1 0.6247 -2.5571 0.8897 32 1 2.8726 -3.6048 0.8878 33 1 2.8713 -3.6039 -0.8922 34 1 1.9105 -5.6605 -1.9412 35 1 0.2133 -5.1789 -1.6454 36 1 1.6415 -7.7332 -0.8487 37 1 -0.0778 -7.4882 -1.3042 38 1 -1.5270 -7.6671 1.1266 39 1 -1.5064 -6.3163 -0.0339 40 1 -2.3842 -5.3538 1.9683 41 1 -0.6791 -4.8589 1.9506 42 1 -1.8402 -7.1816 3.4342 43 1 -1.4065 -5.6076 4.1223 44 1 0.3574 -5.8573 5.4289 45 1 1.6075 -7.0847 5.1143 46 1 -0.9974 -10.7846 6.7889 47 1 -2.8580 -8.9988 7.2632 48 1 1.0282 -8.7159 3.6012 49 1 -0.5980 -8.5939 2.9028 50 1 0.7933 -8.9651 1.0293 51 1 2.0686 -7.8976 1.6462 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272803827.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:23:54 Heat of formation + Delta-G solvation = 19.143020 kcal Electronic energy + Delta-G solvation = -32610.396294 eV Core-core repulsion = 28512.379617 eV Total energy + Delta-G solvation = -4098.016676 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.48564 -40.93741 -38.23321 -35.72152 -35.04689 -34.69913 -33.25563 -32.55862 -31.15694 -30.12999 -28.46428 -27.37841 -25.53552 -25.08720 -24.62580 -22.77288 -22.06173 -21.79470 -21.61946 -20.34357 -19.63043 -17.90065 -17.53208 -16.97140 -16.58885 -16.25353 -15.81576 -15.41644 -15.20274 -15.04289 -14.81280 -14.56402 -14.38368 -13.84843 -13.56888 -13.35070 -13.32266 -13.01781 -12.87071 -12.68815 -12.48844 -12.25363 -12.08761 -11.87572 -11.56394 -11.51018 -11.41946 -11.21627 -11.10360 -10.90879 -10.86231 -10.70883 -10.64426 -10.42389 -10.32489 -10.12565 -9.86469 -9.75036 -9.20019 -9.16160 -8.74697 -8.32549 -8.09183 -7.75138 -5.98009 -4.00756 1.27835 2.50085 2.62292 3.33682 3.39866 3.42479 3.44955 3.78512 3.86786 3.96938 4.48585 4.50171 4.65390 4.73846 4.81947 4.84951 5.06000 5.10125 5.16134 5.21821 5.33767 5.34745 5.38172 5.41600 5.50263 5.62232 5.65142 5.69737 5.75328 5.77139 5.78846 5.85163 5.93891 6.00671 6.06210 6.10359 6.12153 6.13186 6.27444 6.30926 6.42865 6.59273 6.65598 6.92948 7.08741 7.18362 7.25707 7.57918 7.66879 7.77455 8.04033 8.05330 8.41135 9.03503 9.11784 9.62923 11.13299 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013986 B = 0.002968 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.514950 B = 9431.410505 C =10569.785197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.014 3.986 10 C 0.131 3.869 11 N -0.621 5.621 12 C 0.104 3.896 13 C -0.131 4.131 14 C -0.084 4.084 15 C -0.092 4.092 16 C -0.133 4.133 17 C 0.067 3.933 18 N -0.469 5.469 19 C 0.152 3.848 20 C 0.163 3.837 21 N -0.483 5.483 22 C -0.047 4.047 23 C -0.083 4.083 24 O -0.200 6.200 25 C 0.051 3.949 26 C -0.085 4.085 27 C 0.523 3.477 28 O -0.486 6.486 29 H 0.260 0.740 30 H 0.014 0.986 31 H 0.021 0.979 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.025 0.975 43 H 0.068 0.932 44 H 0.105 0.895 45 H 0.118 0.882 46 H 0.180 0.820 47 H 0.211 0.789 48 H 0.077 0.923 49 H 0.034 0.966 50 H 0.065 0.935 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.275 -21.738 6.129 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.024 4.024 10 C 0.011 3.989 11 N -0.356 5.356 12 C -0.020 4.020 13 C -0.168 4.168 14 C -0.088 4.088 15 C -0.129 4.129 16 C -0.171 4.171 17 C -0.060 4.060 18 N -0.190 5.190 19 C 0.022 3.978 20 C -0.046 4.046 21 N -0.213 5.213 22 C -0.186 4.186 23 C -0.154 4.154 24 O -0.086 6.086 25 C -0.077 4.077 26 C -0.124 4.124 27 C 0.308 3.692 28 O -0.358 6.358 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.039 0.961 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.112 0.888 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.123 0.877 45 H 0.136 0.864 46 H 0.198 0.802 47 H 0.228 0.772 48 H 0.095 0.905 49 H 0.052 0.948 50 H 0.084 0.916 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.370 -21.195 6.283 22.362 hybrid contribution -1.044 0.464 0.555 1.271 sum -4.415 -20.731 6.838 22.271 Atomic orbital electron populations 1.69976 1.06054 1.26543 1.50646 1.24989 0.94828 0.99201 0.95241 0.86587 0.79913 0.83445 0.78016 1.20712 1.21244 1.19805 1.21118 0.93008 0.90833 1.50900 0.92606 1.19378 0.94435 0.91052 0.97524 1.21688 0.94896 0.81348 1.00950 1.48590 1.57188 1.23530 1.06279 1.21919 1.00186 0.91288 0.88566 1.22867 1.02157 0.96697 0.95120 1.21112 0.96554 0.95931 0.95164 1.21212 0.92929 0.99564 0.99240 1.20822 1.02340 1.00293 0.93619 1.20952 0.87426 0.98723 0.98915 1.62097 1.24630 1.24112 1.08173 1.21293 0.96745 0.93760 0.85997 1.28390 0.83975 0.95162 0.97068 1.70498 1.28562 1.05040 1.17242 1.23362 0.91314 1.01604 1.02289 1.25039 1.02587 0.83459 1.04349 1.84528 1.32572 1.35533 1.55954 1.22017 0.99957 0.89679 0.96092 1.21903 1.00377 0.96061 0.94060 1.20238 0.79017 0.84997 0.84918 1.90754 1.54930 1.70144 1.19971 0.93046 0.96743 0.96109 0.91345 0.92257 0.91201 0.91667 0.90496 0.89912 0.91810 0.91255 0.91692 0.88774 0.95638 0.91397 0.87700 0.86445 0.80243 0.77231 0.90492 0.94803 0.91611 0.91563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.01 0.37 5.30 -27.88 -0.15 0.22 16 10 C 0.13 2.80 5.87 -4.04 -0.02 2.78 16 11 N -0.62 -11.22 2.93 -172.43 -0.51 -11.72 16 12 C 0.10 1.45 7.35 -3.11 -0.02 1.43 16 13 C -0.13 -1.44 5.93 -25.13 -0.15 -1.59 16 14 C -0.08 -1.11 0.53 -155.20 -0.08 -1.19 16 15 C -0.09 -1.16 4.90 -27.16 -0.13 -1.29 16 16 C -0.13 -1.97 5.24 -29.25 -0.15 -2.12 16 17 C 0.07 0.92 4.23 -6.75 -0.03 0.89 16 18 N -0.47 -6.46 1.72 -241.06 -0.42 -6.87 16 19 C 0.15 1.89 5.71 -4.98 -0.03 1.86 16 20 C 0.16 2.01 6.14 -12.95 -0.08 1.93 16 21 N -0.48 -6.03 10.44 -11.10 -0.12 -6.15 16 22 C -0.05 -0.46 11.89 -17.77 -0.21 -0.68 16 23 C -0.08 -0.75 12.18 29.35 0.36 -0.39 16 24 O -0.20 -2.38 10.77 5.39 0.06 -2.32 16 25 C 0.05 0.64 4.24 -4.66 -0.02 0.62 16 26 C -0.09 -1.02 4.73 -25.50 -0.12 -1.14 16 27 C 0.52 9.24 4.90 -10.90 -0.05 9.19 16 28 O -0.49 -9.93 13.01 5.55 0.07 -9.86 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.53 7.93 -51.93 -0.41 1.12 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.75 7.80 -51.93 -0.41 0.35 16 37 H 0.08 0.74 7.78 -51.92 -0.40 0.34 16 38 H 0.06 0.71 7.22 -51.93 -0.37 0.34 16 39 H 0.07 0.85 7.70 -51.93 -0.40 0.45 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.09 1.79 5.21 -51.93 -0.27 1.52 16 42 H 0.03 0.33 7.18 -51.93 -0.37 -0.04 16 43 H 0.07 0.95 7.63 -51.93 -0.40 0.55 16 44 H 0.10 1.26 7.89 -51.93 -0.41 0.85 16 45 H 0.12 1.39 8.13 -51.93 -0.42 0.97 16 46 H 0.18 1.22 8.06 -52.48 -0.42 0.79 16 47 H 0.21 1.01 8.06 -52.49 -0.42 0.58 16 48 H 0.08 0.97 6.71 -51.93 -0.35 0.62 16 49 H 0.03 0.42 6.54 -51.93 -0.34 0.08 16 50 H 0.07 0.64 8.01 -51.93 -0.42 0.23 16 51 H 0.07 0.86 7.93 -51.93 -0.41 0.45 16 LS Contribution 391.42 15.07 5.90 5.90 Total: -1.00 -33.91 391.42 -8.91 -42.81 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -8.31 Total: 0.70 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -1.31 Total: -2.98 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.30 Total: -51.03 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.13 Total: -12.18 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.91 -8.91 -42.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272803827.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.958 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds