Wall clock time and date at job start Sat Apr 11 2020 08:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86797 * 120.00016 * 2 1 4 4 H 1.48495 * 109.47447 * 270.00221 * 3 2 1 5 5 H 1.48507 * 109.47093 * 30.00367 * 3 2 1 6 6 H 1.48497 * 109.47152 * 149.99807 * 3 2 1 7 7 C 1.37873 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99774 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00371 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47094 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46853 * 180.02562 * 10 9 7 12 12 C 1.46777 * 124.35175 * 90.00603 * 11 10 9 13 13 C 1.54480 * 105.46890 * 163.01608 * 12 11 10 14 14 C 1.54578 * 101.73166 * 25.40027 * 13 12 11 15 15 C 1.50455 * 110.34292 * 94.45235 * 14 13 12 16 16 C 1.54602 * 108.88821 * 213.67323 * 15 14 13 17 17 C 1.45892 * 111.48756 * 283.30500 * 16 15 14 18 18 N 1.47706 * 113.04895 * 61.38677 * 17 16 15 19 19 C 1.46896 * 110.99906 * 153.45422 * 18 17 16 20 20 C 1.50701 * 109.47277 * 66.04284 * 19 18 17 21 21 N 1.30254 * 125.61664 * 90.03886 * 20 19 18 22 22 C 1.34473 * 108.70205 * 179.97438 * 21 20 19 23 23 C 1.34334 * 107.66757 * 359.97438 * 22 21 20 24 24 O 1.33963 * 125.62324 * 269.99911 * 20 19 18 25 25 C 1.44288 * 109.44006 * 276.31586 * 18 17 16 26 26 C 1.54072 * 111.81965 * 96.49451 * 25 18 17 27 27 C 1.34462 * 124.35298 * 270.00024 * 11 10 9 28 28 O 1.21285 * 124.95842 * 0.36090 * 27 11 10 29 29 H 0.96993 * 119.99827 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46633 * 60.00374 * 9 7 2 31 31 H 1.09002 * 109.47254 * 300.00261 * 9 7 2 32 32 H 1.09002 * 109.47008 * 60.00686 * 10 9 7 33 33 H 1.09002 * 109.47351 * 300.00284 * 10 9 7 34 34 H 1.09000 * 110.24275 * 44.01087 * 12 11 10 35 35 H 1.09000 * 110.24220 * 282.01518 * 12 11 10 36 36 H 1.09000 * 110.97963 * 267.28659 * 13 12 11 37 37 H 1.09008 * 110.97487 * 143.51154 * 13 12 11 38 38 H 1.09006 * 109.57036 * 93.85389 * 15 14 13 39 39 H 1.09001 * 109.66643 * 333.55751 * 15 14 13 40 40 H 1.09000 * 109.07550 * 162.78560 * 16 15 14 41 41 H 1.09000 * 109.02052 * 43.79140 * 16 15 14 42 42 H 1.08998 * 108.77008 * 300.45910 * 17 16 15 43 43 H 1.09001 * 108.67326 * 182.23866 * 17 16 15 44 44 H 1.08997 * 109.47239 * 306.04552 * 19 18 17 45 45 H 1.09002 * 109.47073 * 186.04455 * 19 18 17 46 46 H 1.08003 * 126.16912 * 180.26138 * 22 21 20 47 47 H 1.08001 * 126.44328 * 180.02562 * 23 22 21 48 48 H 1.09003 * 109.01285 * 217.09633 * 25 18 17 49 49 H 1.09004 * 109.01358 * 335.88679 * 25 18 17 50 50 H 1.09002 * 108.93156 * 198.29290 * 26 25 18 51 51 H 1.09000 * 108.85712 * 79.65661 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 7 1.5127 -4.9308 -0.0024 12 6 1.0982 -5.6472 -1.2146 13 6 0.7709 -7.0844 -0.7521 14 6 0.4089 -6.8616 0.7341 15 6 -1.0788 -6.7017 0.8917 16 6 -1.3561 -5.7082 2.0433 17 6 -1.1612 -6.3334 3.3470 18 7 0.2214 -6.8074 3.5601 19 6 0.5534 -6.8359 4.9908 20 6 -0.2922 -7.8742 5.6822 21 7 0.0261 -9.1268 5.8437 22 6 -0.9704 -9.7433 6.5034 23 6 -1.9236 -8.8291 6.7489 24 8 -1.4947 -7.6607 6.2327 25 6 0.3782 -8.1132 2.9667 26 6 0.9906 -8.0310 1.5553 27 6 1.1338 -5.5887 1.1073 28 8 1.3431 -5.2154 2.2421 29 1 -0.4849 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8904 31 1 0.6247 -2.5571 0.8897 32 1 2.8726 -3.6048 0.8878 33 1 2.8713 -3.6039 -0.8922 34 1 1.9105 -5.6605 -1.9412 35 1 0.2133 -5.1789 -1.6454 36 1 1.6415 -7.7332 -0.8487 37 1 -0.0778 -7.4882 -1.3042 38 1 -1.5270 -7.6671 1.1266 39 1 -1.5064 -6.3163 -0.0339 40 1 -2.3842 -5.3538 1.9683 41 1 -0.6791 -4.8589 1.9506 42 1 -1.8402 -7.1816 3.4342 43 1 -1.4065 -5.6076 4.1223 44 1 0.3574 -5.8573 5.4289 45 1 1.6075 -7.0847 5.1143 46 1 -0.9974 -10.7846 6.7889 47 1 -2.8580 -8.9988 7.2632 48 1 1.0282 -8.7159 3.6012 49 1 -0.5980 -8.5939 2.9028 50 1 0.7933 -8.9651 1.0293 51 1 2.0686 -7.8976 1.6462 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272803827.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:23:53 Heat of formation + Delta-G solvation = -3.264081 kcal Electronic energy + Delta-G solvation = -32611.367939 eV Core-core repulsion = 28512.379617 eV Total energy + Delta-G solvation = -4098.988321 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.31582 -42.12320 -39.37432 -37.08202 -36.37155 -35.71771 -34.99721 -33.86661 -32.48396 -31.34046 -29.84890 -28.38862 -26.98697 -26.39581 -25.89129 -23.71908 -23.47568 -23.02285 -22.59594 -21.64484 -20.80539 -19.19562 -18.60463 -18.34789 -17.86737 -17.47811 -17.04994 -16.58354 -16.50246 -16.41869 -16.00093 -15.82412 -15.52108 -15.11435 -14.76085 -14.61156 -14.35490 -14.25225 -14.15886 -13.99454 -13.91053 -13.59658 -13.34278 -13.17647 -13.01323 -12.83733 -12.65666 -12.56502 -12.39763 -12.31006 -12.17540 -11.88391 -11.83691 -11.76007 -11.60863 -11.48366 -11.42437 -11.35138 -11.12378 -10.57453 -10.08867 -9.93784 -9.27071 -9.13934 -8.21042 -6.33417 0.47619 1.39001 1.41397 1.52387 1.69447 1.84208 2.08438 2.33813 2.49168 2.91150 3.11204 3.11989 3.40813 3.63470 3.83051 3.95805 4.00004 4.11237 4.16572 4.17712 4.22695 4.28729 4.34238 4.42586 4.47649 4.52571 4.60312 4.68745 4.73177 4.75462 4.78785 4.84097 4.89790 4.93479 4.96528 4.98186 4.99307 5.05699 5.17395 5.19444 5.27041 5.33034 5.38838 5.43758 5.46035 5.56827 5.71089 5.95759 6.06237 6.21066 6.23377 6.63146 6.75576 6.82704 7.35785 7.71226 8.90734 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013986 B = 0.002968 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.514950 B = 9431.410505 C =10569.785197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.030 3.970 10 C 0.148 3.852 11 N -0.633 5.633 12 C 0.095 3.905 13 C -0.114 4.114 14 C -0.076 4.076 15 C -0.087 4.087 16 C -0.132 4.132 17 C 0.076 3.924 18 N -0.487 5.487 19 C 0.156 3.844 20 C 0.148 3.852 21 N -0.499 5.499 22 C -0.063 4.063 23 C -0.073 4.073 24 O -0.217 6.217 25 C 0.057 3.943 26 C -0.082 4.082 27 C 0.510 3.490 28 O -0.524 6.524 29 H 0.263 0.737 30 H -0.006 1.006 31 H -0.025 1.025 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.044 0.956 42 H 0.038 0.962 43 H 0.052 0.948 44 H 0.096 0.904 45 H 0.116 0.884 46 H 0.208 0.792 47 H 0.252 0.748 48 H 0.073 0.927 49 H 0.038 0.962 50 H 0.101 0.899 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.390 -24.080 5.250 25.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.082 0.918 9 C -0.008 4.008 10 C 0.026 3.974 11 N -0.368 5.368 12 C -0.027 4.027 13 C -0.151 4.151 14 C -0.080 4.080 15 C -0.124 4.124 16 C -0.170 4.170 17 C -0.051 4.051 18 N -0.208 5.208 19 C 0.026 3.974 20 C -0.061 4.061 21 N -0.230 5.230 22 C -0.201 4.201 23 C -0.143 4.143 24 O -0.102 6.102 25 C -0.072 4.072 26 C -0.120 4.120 27 C 0.298 3.702 28 O -0.399 6.399 29 H 0.072 0.928 30 H 0.012 0.988 31 H -0.007 1.007 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.117 0.883 37 H 0.133 0.867 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.071 0.929 44 H 0.114 0.886 45 H 0.134 0.866 46 H 0.225 0.775 47 H 0.268 0.732 48 H 0.091 0.909 49 H 0.056 0.944 50 H 0.119 0.881 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.486 -23.568 5.383 24.425 hybrid contribution -1.077 1.188 0.917 1.847 sum -4.562 -22.380 6.301 23.694 Atomic orbital electron populations 1.70121 1.07898 1.27744 1.51408 1.25988 0.95762 1.03431 0.94513 0.85414 0.78563 0.78165 0.78708 1.19191 1.20926 1.18832 1.21571 0.93635 0.92020 1.50934 0.91832 1.19149 0.94461 0.93059 0.94152 1.21194 0.93698 0.81661 1.00889 1.48710 1.57093 1.22556 1.08433 1.22209 1.00532 0.92684 0.87299 1.22916 1.04346 0.94882 0.93005 1.21091 0.96123 0.93589 0.97194 1.21237 0.92770 1.00040 0.98381 1.20776 1.01233 0.99432 0.95533 1.20802 0.87961 0.98597 0.97773 1.62072 1.24482 1.25211 1.09067 1.21101 0.96894 0.93723 0.85722 1.28063 0.84498 0.95108 0.98382 1.70468 1.29694 1.05148 1.17718 1.23897 0.90867 1.03061 1.02276 1.25889 1.03485 0.82112 1.02785 1.84525 1.32472 1.37018 1.56224 1.21982 1.00033 0.88832 0.96306 1.21946 0.99434 0.96813 0.93843 1.21163 0.78518 0.86320 0.84246 1.90722 1.56134 1.71418 1.21581 0.92809 0.98813 1.00707 0.93169 0.90327 0.89353 0.92402 0.88320 0.86652 0.89131 0.90638 0.91309 0.93689 0.94431 0.92894 0.88573 0.86578 0.77485 0.73244 0.90859 0.94387 0.88096 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.27 13.29 21.45 0.28 -57.98 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.97 45.26 29.54 68.60 2.03 47.29 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.54 -31.86 9.11 25.60 0.23 -31.62 16 8 H 0.06 3.54 7.74 -2.91 -0.02 3.52 16 9 C 0.03 1.66 5.30 29.85 0.16 1.82 16 10 C 0.15 6.54 5.87 86.38 0.51 7.05 16 11 N -0.63 -23.36 2.93 -818.02 -2.40 -25.76 16 12 C 0.10 2.51 7.35 86.83 0.64 3.15 16 13 C -0.11 -2.12 5.93 31.63 0.19 -1.93 16 14 C -0.08 -1.90 0.53 -52.63 -0.03 -1.92 16 15 C -0.09 -2.06 4.90 30.32 0.15 -1.91 16 16 C -0.13 -4.05 5.24 28.96 0.15 -3.90 16 17 C 0.08 2.15 4.23 83.97 0.36 2.50 16 18 N -0.49 -13.84 1.72 -916.57 -1.58 -15.42 16 19 C 0.16 4.10 5.71 85.56 0.49 4.59 16 20 C 0.15 3.67 6.14 88.34 0.54 4.21 16 21 N -0.50 -12.07 10.44 -303.83 -3.17 -15.24 16 22 C -0.06 -1.12 11.89 83.40 0.99 -0.12 16 23 C -0.07 -1.15 12.18 66.93 0.81 -0.34 16 24 O -0.22 -5.04 10.77 -3.62 -0.04 -5.08 16 25 C 0.06 1.36 4.24 87.15 0.37 1.73 16 26 C -0.08 -1.78 4.73 31.39 0.15 -1.63 16 27 C 0.51 18.53 4.90 87.85 0.43 18.96 16 28 O -0.52 -22.84 13.01 -3.05 -0.04 -22.88 16 29 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 30 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H -0.03 -1.63 8.14 -2.39 -0.02 -1.65 16 32 H 0.05 2.37 7.93 -2.39 -0.02 2.35 16 33 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 34 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.10 1.48 7.80 -2.39 -0.02 1.46 16 37 H 0.12 1.48 7.78 -2.38 -0.02 1.46 16 38 H 0.09 1.72 7.22 -2.38 -0.02 1.70 16 39 H 0.07 1.71 7.70 -2.39 -0.02 1.69 16 40 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.04 1.85 5.21 -2.39 -0.01 1.84 16 42 H 0.04 0.96 7.18 -2.39 -0.02 0.94 16 43 H 0.05 1.60 7.63 -2.39 -0.02 1.58 16 44 H 0.10 2.59 7.89 -2.39 -0.02 2.57 16 45 H 0.12 2.98 8.13 -2.39 -0.02 2.96 16 46 H 0.21 2.23 8.06 -2.91 -0.02 2.21 16 47 H 0.25 1.52 8.06 -2.91 -0.02 1.50 16 48 H 0.07 1.80 6.71 -2.39 -0.02 1.78 16 49 H 0.04 0.87 6.54 -2.38 -0.02 0.85 16 50 H 0.10 1.52 8.01 -2.39 -0.02 1.50 16 51 H 0.05 1.32 7.93 -2.39 -0.02 1.31 16 Total: -1.00 -78.72 391.42 2.60 -76.12 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.92 Total: 17.80 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 6.60 Total: 1.16 kcal Atomic # 7 Polarization: -107.54 SS G_CDS: -6.87 Total: -114.40 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.08 Total: -27.96 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -78.72 2.60 -76.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272803827.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.856 kcal (2) G-P(sol) polarization free energy of solvation -78.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds