Wall clock time and date at job start Sat Apr 11 2020 08:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.46995 * 179.97438 * 10 9 7 12 12 C 1.46778 * 124.34788 * 89.99882 * 11 10 9 13 13 C 1.54369 * 105.46222 * 196.81255 * 12 11 10 14 14 C 1.54456 * 101.90894 * 334.80034 * 13 12 11 15 15 C 1.34441 * 124.34820 * 269.69810 * 11 10 9 16 16 O 1.21280 * 124.94420 * 359.62915 * 15 11 10 17 17 C 1.54287 * 108.48819 * 220.37825 * 13 12 11 18 18 O 1.40377 * 108.79111 * 158.05578 * 17 13 12 19 19 C 1.44179 * 117.15930 * 92.92629 * 18 17 13 20 20 C 1.53845 * 112.86962 * 317.90099 * 19 18 17 21 21 N 1.44337 * 112.22759 * 318.41777 * 20 19 18 22 22 C 1.46904 * 111.00068 * 215.85912 * 21 20 19 23 23 C 1.50701 * 109.46833 * 46.94436 * 22 21 20 24 24 C 1.34851 * 125.88661 * 95.00248 * 23 22 21 25 25 C 1.40897 * 107.41467 * 179.97438 * 24 23 22 26 26 C 1.34850 * 107.41795 * 0.02562 * 25 24 23 27 27 N 1.36340 * 125.89101 * 274.69008 * 23 22 21 28 28 H 0.97001 * 125.63583 * 0.02562 * 27 23 22 29 29 C 1.46524 * 112.73979 * 95.91659 * 13 12 11 30 30 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46909 * 299.99046 * 9 7 2 32 32 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 33 33 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 34 34 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 35 35 H 1.08996 * 110.25053 * 315.81451 * 12 11 10 36 36 H 1.09003 * 110.24758 * 77.72867 * 12 11 10 37 37 H 1.09000 * 110.48713 * 143.29905 * 14 13 12 38 38 H 1.09004 * 110.48806 * 265.93556 * 14 13 12 39 39 H 1.08996 * 109.58580 * 277.84951 * 17 13 12 40 40 H 1.09000 * 109.58206 * 38.27190 * 17 13 12 41 41 H 1.09001 * 108.80092 * 197.03705 * 19 18 17 42 42 H 1.08995 * 108.80479 * 78.77943 * 19 18 17 43 43 H 1.09004 * 108.93380 * 197.70619 * 20 19 18 44 44 H 1.09001 * 108.85871 * 79.07676 * 20 19 18 45 45 H 1.08988 * 109.46916 * 166.94618 * 22 21 20 46 46 H 1.09003 * 109.46632 * 286.94685 * 22 21 20 47 47 H 1.07992 * 126.29365 * 359.97438 * 24 23 22 48 48 H 1.08001 * 126.28943 * 180.02562 * 25 24 23 49 49 H 1.08001 * 125.89317 * 180.02562 * 26 25 24 50 50 H 1.08997 * 108.92421 * 304.04691 * 29 13 12 51 51 H 1.09002 * 108.92286 * 62.69926 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 1.0984 -5.6483 -1.2103 13 6 0.0219 -6.6524 -0.7459 14 6 0.3931 -6.8532 0.7399 15 6 1.1391 -5.5903 1.1114 16 8 1.3647 -5.2248 2.2456 17 6 0.2418 -7.9852 -1.4914 18 8 -0.3582 -9.0193 -0.7557 19 6 -1.7145 -9.3690 -1.0976 20 6 -2.6016 -8.1393 -1.3576 21 7 -2.3611 -7.0814 -0.4056 22 6 -3.6065 -6.3743 -0.0784 23 6 -4.6927 -7.3780 0.2112 24 6 -5.0459 -7.8306 1.4314 25 6 -6.0980 -8.7504 1.2518 26 6 -6.3473 -8.8252 -0.0714 27 7 -5.4918 -7.9805 -0.7147 28 1 -5.4558 -7.8346 -1.6730 29 6 -1.3409 -6.1452 -0.9256 30 1 -0.4850 -0.8401 -0.0004 31 1 0.6242 -2.5567 0.8904 32 1 0.6248 -2.5571 -0.8896 33 1 2.8720 -3.6043 -0.8895 34 1 2.8721 -3.6042 0.8905 35 1 0.6772 -4.9522 -1.9356 36 1 1.9470 -6.1770 -1.6446 37 1 -0.5060 -6.9612 1.3466 38 1 1.0402 -7.7226 0.8573 39 1 -0.2122 -7.9297 -2.4807 40 1 1.3103 -8.1779 -1.5877 41 1 -2.1453 -9.9462 -0.2795 42 1 -1.7021 -9.9891 -1.9939 43 1 -3.6479 -8.4387 -1.2967 44 1 -2.3993 -7.7647 -2.3610 45 1 -3.4484 -5.7468 0.7985 46 1 -3.9030 -5.7514 -0.9223 47 1 -4.6036 -7.5413 2.3732 48 1 -6.6106 -9.2953 2.0306 49 1 -7.0986 -9.4434 -0.5402 50 1 -1.4357 -5.1934 -0.4029 51 1 -1.5207 -5.9836 -1.9885 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272925597.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:23:59 Heat of formation + Delta-G solvation = -10.060563 kcal Electronic energy + Delta-G solvation = -31992.235393 eV Core-core repulsion = 27892.952354 eV Total energy + Delta-G solvation = -4099.283039 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.66896 -40.87031 -38.87135 -36.64183 -36.13671 -34.50251 -32.83682 -31.28585 -30.80588 -30.11256 -28.51668 -28.00772 -26.58352 -25.81182 -24.38949 -23.70672 -21.65408 -21.42226 -20.88425 -20.25044 -19.83490 -19.00411 -17.66538 -17.04956 -16.90015 -16.34837 -16.22667 -16.04439 -15.27694 -14.96730 -14.81503 -14.57549 -14.30348 -13.91291 -13.89561 -13.71783 -13.60627 -13.31742 -13.26471 -13.07905 -12.78496 -12.54123 -12.37570 -12.29632 -12.12365 -11.89863 -11.63496 -11.58459 -11.42544 -11.19771 -11.00623 -10.83195 -10.67964 -10.35417 -10.10633 -10.07014 -9.66305 -9.21995 -9.04208 -8.68026 -8.67014 -8.34451 -8.25898 -8.06324 -6.38978 -4.08212 1.92451 2.77884 2.99216 3.09779 3.33544 3.42932 3.46282 3.62257 3.64322 3.84958 4.35072 4.44124 4.54547 4.55393 4.58317 4.65394 4.71055 4.88906 4.93030 4.99189 5.06911 5.13907 5.24592 5.28991 5.29915 5.39517 5.45025 5.49637 5.51215 5.55110 5.58777 5.66441 5.73444 5.76759 5.95544 6.00471 6.12825 6.16506 6.26165 6.36828 6.66176 6.66728 6.74492 6.81842 6.90135 6.93083 7.20664 7.28276 7.29443 7.46779 7.74133 8.15044 8.42424 8.71436 8.84590 9.64453 11.01894 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012302 B = 0.002843 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.577031 B = 9846.601709 C =11138.161450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.017 3.983 3 Si 1.070 2.930 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.602 4.602 8 H 0.050 0.950 9 C 0.001 3.999 10 C 0.135 3.865 11 N -0.615 5.615 12 C 0.116 3.884 13 C -0.097 4.097 14 C -0.121 4.121 15 C 0.508 3.492 16 O -0.536 6.536 17 C 0.083 3.917 18 O -0.370 6.370 19 C 0.077 3.923 20 C 0.007 3.993 21 N -0.517 5.517 22 C 0.124 3.876 23 C 0.015 3.985 24 C -0.169 4.169 25 C -0.200 4.200 26 C -0.014 4.014 27 N -0.562 5.562 28 H 0.410 0.590 29 C 0.071 3.929 30 H 0.268 0.732 31 H 0.012 0.988 32 H 0.006 0.994 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.048 0.952 43 H 0.086 0.914 44 H 0.037 0.963 45 H 0.103 0.897 46 H 0.042 0.958 47 H 0.137 0.863 48 H 0.135 0.865 49 H 0.162 0.838 50 H 0.083 0.917 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.191 -22.308 -7.845 25.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.187 4.187 3 Si 0.898 3.102 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.641 4.641 8 H 0.069 0.931 9 C -0.037 4.037 10 C 0.015 3.985 11 N -0.349 5.349 12 C -0.009 4.009 13 C -0.098 4.098 14 C -0.161 4.161 15 C 0.296 3.704 16 O -0.413 6.413 17 C 0.006 3.994 18 O -0.288 6.288 19 C 0.000 4.000 20 C -0.123 4.123 21 N -0.241 5.241 22 C -0.003 4.003 23 C -0.096 4.096 24 C -0.194 4.194 25 C -0.225 4.225 26 C -0.145 4.145 27 N -0.160 5.160 28 H 0.247 0.753 29 C -0.056 4.056 30 H 0.078 0.922 31 H 0.030 0.970 32 H 0.024 0.976 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.127 0.873 38 H 0.119 0.881 39 H 0.067 0.933 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.066 0.934 43 H 0.104 0.896 44 H 0.055 0.945 45 H 0.122 0.878 46 H 0.060 0.940 47 H 0.155 0.845 48 H 0.152 0.848 49 H 0.179 0.821 50 H 0.101 0.899 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.945 -20.655 -6.819 23.917 hybrid contribution -0.371 -1.087 -1.571 1.946 sum -10.316 -21.741 -8.390 25.485 Atomic orbital electron populations 1.70782 1.06903 1.30527 1.46435 1.25854 0.96524 1.02729 0.93620 0.83535 0.74894 0.75226 0.76568 1.20755 1.21430 1.21315 1.21924 0.94318 0.91713 1.56157 0.93136 1.19511 0.95077 0.92880 0.96251 1.21613 0.94742 0.80641 1.01540 1.48566 1.56910 1.23296 1.06161 1.22003 0.96174 0.94029 0.88699 1.20992 0.94684 0.96522 0.97628 1.22179 1.02170 0.96592 0.95183 1.21062 0.79147 0.85580 0.84618 1.90700 1.57663 1.71714 1.21254 1.22454 0.98119 0.85680 0.93194 1.87462 1.26623 1.53165 1.61536 1.22940 0.81814 0.94752 1.00483 1.22781 1.01682 0.94024 0.93780 1.61348 1.08264 1.11199 1.43302 1.20722 0.85078 0.92612 1.01885 1.20063 0.97852 1.02479 0.89238 1.20780 1.00432 1.01552 0.96637 1.20952 1.02093 1.04224 0.95223 1.21823 0.99303 1.00041 0.93351 1.42224 1.29459 1.35492 1.08786 0.75345 1.20973 0.90432 0.95745 0.98413 0.92198 0.97002 0.97609 0.91643 0.90953 0.90464 0.90975 0.87306 0.88083 0.93297 0.89084 0.89207 0.93391 0.89579 0.94503 0.87837 0.94000 0.84472 0.84753 0.82067 0.89862 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.18 13.65 55.43 0.76 -27.42 16 2 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 3 Si 1.07 25.51 29.90 -169.99 -5.08 20.43 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.60 -17.32 9.11 -34.44 -0.31 -17.64 16 8 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 9 C 0.00 0.02 4.61 -27.88 -0.13 -0.11 16 10 C 0.13 2.89 5.88 -4.04 -0.02 2.87 16 11 N -0.62 -11.12 2.93 -172.45 -0.51 -11.62 16 12 C 0.12 1.51 6.47 -3.17 -0.02 1.49 16 13 C -0.10 -1.12 0.62 -155.44 -0.10 -1.22 16 14 C -0.12 -1.74 5.30 -26.82 -0.14 -1.88 16 15 C 0.51 9.74 8.03 -10.83 -0.09 9.65 16 16 O -0.54 -12.80 17.59 5.56 0.10 -12.71 16 17 C 0.08 0.79 5.13 37.83 0.19 0.98 16 18 O -0.37 -3.98 9.32 -33.80 -0.31 -4.29 16 19 C 0.08 0.68 7.02 37.60 0.26 0.94 16 20 C 0.01 0.06 4.90 -4.76 -0.02 0.03 16 21 N -0.52 -5.35 3.98 -240.63 -0.96 -6.31 16 22 C 0.12 1.26 5.64 -4.97 -0.03 1.23 16 23 C 0.01 0.14 5.38 -81.79 -0.44 -0.30 16 24 C -0.17 -1.79 10.77 -39.78 -0.43 -2.22 16 25 C -0.20 -1.85 10.86 -39.78 -0.43 -2.28 16 26 C -0.01 -0.11 11.94 -16.75 -0.20 -0.31 16 27 N -0.56 -4.16 4.60 -9.12 -0.04 -4.20 16 28 H 0.41 2.08 8.46 -40.82 -0.35 1.73 16 29 C 0.07 0.81 3.73 -6.36 -0.02 0.79 16 30 H 0.27 8.28 7.22 -40.82 -0.29 7.99 16 31 H 0.01 0.34 8.01 -51.93 -0.42 -0.08 16 32 H 0.01 0.15 8.01 -51.93 -0.42 -0.27 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.07 1.67 7.92 -51.93 -0.41 1.26 16 35 H 0.08 1.01 7.92 -51.93 -0.41 0.60 16 36 H 0.07 0.78 7.38 -51.93 -0.38 0.40 16 37 H 0.11 1.65 7.50 -51.93 -0.39 1.26 16 38 H 0.10 1.37 7.53 -51.93 -0.39 0.98 16 39 H 0.05 0.39 7.16 -51.93 -0.37 0.02 16 40 H 0.09 0.78 7.53 -51.93 -0.39 0.39 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.09 0.66 4.02 -51.93 -0.21 0.45 16 44 H 0.04 0.29 6.72 -51.93 -0.35 -0.06 16 45 H 0.10 1.16 8.14 -51.94 -0.42 0.73 16 46 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16 47 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 48 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 49 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 50 H 0.08 1.16 7.86 -51.93 -0.41 0.75 16 51 H 0.04 0.45 7.40 -51.93 -0.38 0.07 16 LS Contribution 397.30 15.07 5.99 5.99 Total: -1.00 -35.67 397.30 -10.24 -45.91 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -8.15 Total: 1.81 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -2.03 Total: -7.58 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.75 Total: -49.55 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.22 Total: -17.00 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -5.08 Total: 20.43 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.67 -10.24 -45.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272925597.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.845 kcal (2) G-P(sol) polarization free energy of solvation -35.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds