Wall clock time and date at job start Sat Apr 11 2020 08:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.47599 * 110.99785 * 266.10420 * 11 10 9 13 13 C 1.52866 * 87.78958 * 221.75968 * 12 11 10 14 14 C 1.47594 * 110.99966 * 170.00148 * 11 10 9 15 15 C 1.52454 * 114.30291 * 139.67397 * 13 12 11 16 16 N 1.46290 * 109.56650 * 177.66771 * 15 13 12 17 17 C 1.46509 * 118.72393 * 164.10203 * 16 15 13 18 18 C 1.52999 * 109.46427 * 269.99587 * 17 16 15 19 19 C 1.53004 * 109.46596 * 179.97438 * 18 17 16 20 20 N 1.46500 * 109.47103 * 179.97438 * 19 18 17 21 21 C 1.36345 * 125.63697 * 269.69688 * 20 19 18 22 22 C 1.34857 * 108.21656 * 179.82699 * 21 20 19 23 23 C 1.40897 * 107.41624 * 0.42680 * 22 21 20 24 24 C 1.34847 * 107.41805 * 359.73082 * 23 22 21 25 25 C 1.33713 * 122.55223 * 344.09198 * 16 15 13 26 26 O 1.21281 * 118.36135 * 183.28410 * 25 16 15 27 27 C 1.50163 * 123.27746 * 3.25964 * 25 16 15 28 28 O 1.42571 * 114.28570 * 271.62314 * 13 12 11 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 33 33 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 34 34 H 1.09003 * 113.49644 * 336.48874 * 12 11 10 35 35 H 1.08995 * 113.49808 * 107.02515 * 12 11 10 36 36 H 1.09004 * 113.49421 * 252.96318 * 14 11 10 37 37 H 1.08994 * 113.50269 * 23.50574 * 14 11 10 38 38 H 1.08997 * 109.45250 * 297.71442 * 15 13 12 39 39 H 1.09001 * 109.45117 * 57.65560 * 15 13 12 40 40 H 1.09002 * 109.46707 * 29.99329 * 17 16 15 41 41 H 1.09000 * 109.47077 * 149.99774 * 17 16 15 42 42 H 1.09004 * 109.46975 * 299.99452 * 18 17 16 43 43 H 1.09000 * 109.47339 * 60.00347 * 18 17 16 44 44 H 1.09001 * 109.47435 * 299.99867 * 19 18 17 45 45 H 1.09000 * 109.46922 * 60.00179 * 19 18 17 46 46 H 1.07993 * 125.88833 * 359.96118 * 21 20 19 47 47 H 1.07992 * 126.28914 * 180.15930 * 22 21 20 48 48 H 1.07991 * 126.29053 * 179.73583 * 23 22 21 49 49 H 1.08000 * 125.89043 * 180.02562 * 24 23 22 50 50 H 1.08998 * 109.35335 * 222.07436 * 27 25 16 51 51 H 1.09007 * 109.22468 * 102.45095 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 1.3266 -5.4456 1.3555 13 6 1.6572 -6.8378 0.8176 14 6 2.4213 -6.0697 -0.2610 15 6 2.5412 -7.6723 1.7376 16 7 2.7458 -8.9969 1.1515 17 6 3.8292 -9.8363 1.6692 18 6 5.1102 -9.5597 0.8795 19 6 6.2419 -10.4358 1.4206 20 7 7.4683 -10.1715 0.6642 21 6 7.8638 -10.8289 -0.4630 22 6 9.0373 -10.3024 -0.8683 23 6 9.3838 -9.2893 0.0476 24 6 8.4059 -9.2313 0.9742 25 6 1.9822 -9.4714 0.1617 26 8 2.1801 -10.6032 -0.2267 27 6 0.8915 -8.6732 -0.4927 28 8 0.5290 -7.5622 0.3326 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 2.8718 -3.6005 -0.9002 33 1 2.8717 -3.6084 0.8798 34 1 2.0641 -5.0666 2.0630 35 1 0.3038 -5.3523 1.7206 36 1 2.3199 -6.5018 -1.2567 37 1 3.4574 -5.8610 0.0055 38 1 3.5043 -7.1775 1.8624 39 1 2.0580 -7.7761 2.7092 40 1 3.9947 -9.6074 2.7220 41 1 3.5572 -10.8865 1.5640 42 1 4.9446 -9.7886 -0.1733 43 1 5.3823 -8.5094 0.9847 44 1 6.4074 -10.2066 2.4733 45 1 5.9701 -11.4861 1.3158 46 1 7.3283 -11.6312 -0.9487 47 1 9.6088 -10.6050 -1.7332 48 1 10.2696 -8.6726 0.0136 49 1 8.3711 -8.5562 1.8166 50 1 0.0198 -9.3095 -0.6450 51 1 1.2440 -8.3068 -1.4569 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274039709.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:24:25 Heat of formation + Delta-G solvation = 21.755971 kcal Electronic energy + Delta-G solvation = -30505.987392 eV Core-core repulsion = 26408.084022 eV Total energy + Delta-G solvation = -4097.903370 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.61465 -41.31131 -39.71911 -36.91537 -36.57115 -34.45280 -33.45591 -31.43849 -30.79623 -29.02587 -29.00200 -27.98974 -26.00698 -25.87974 -25.44614 -23.38333 -22.56248 -20.89722 -20.70111 -20.26700 -20.17430 -18.78406 -17.86531 -17.72824 -16.84534 -16.56754 -16.24166 -16.05618 -15.49476 -15.24682 -14.97441 -14.82009 -14.53918 -14.36850 -14.17393 -13.97443 -13.76876 -13.58883 -13.34548 -12.94644 -12.79217 -12.60806 -12.53688 -12.33281 -12.26996 -12.22355 -12.10904 -11.90968 -11.71713 -11.30507 -11.18961 -10.96195 -10.89912 -10.55347 -10.30827 -9.90207 -9.67338 -9.47583 -9.25449 -9.12211 -8.82588 -8.48587 -8.39242 -8.36940 -6.03006 -4.06508 1.99809 2.17738 2.38803 2.71015 2.84933 3.24216 3.29196 3.35645 3.37884 3.88696 4.07629 4.13951 4.22634 4.41758 4.42777 4.47212 4.55037 4.64071 4.76406 4.85877 4.93177 4.98512 5.01193 5.03065 5.10265 5.17360 5.30624 5.32673 5.33786 5.34977 5.42763 5.47418 5.49330 5.62227 5.63179 5.68912 5.92005 5.99104 6.07157 6.09162 6.16319 6.65101 6.66931 6.76279 6.93489 6.99095 6.99974 7.12772 7.26958 7.68551 7.68787 7.82253 8.02212 8.36828 9.00827 9.57527 11.08141 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009584 B = 0.002344 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.869214 B =11943.938780 C =14253.232305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.053 0.947 9 C 0.034 3.966 10 C 0.026 3.974 11 N -0.455 5.455 12 C 0.027 3.973 13 C 0.064 3.936 14 C -0.024 4.024 15 C 0.102 3.898 16 N -0.601 5.601 17 C 0.112 3.888 18 C -0.151 4.151 19 C 0.110 3.890 20 N -0.448 5.448 21 C -0.015 4.015 22 C -0.204 4.204 23 C -0.203 4.203 24 C -0.017 4.017 25 C 0.492 3.508 26 O -0.546 6.546 27 C 0.049 3.951 28 O -0.326 6.326 29 H 0.261 0.739 30 H 0.016 0.984 31 H 0.024 0.976 32 H 0.061 0.939 33 H 0.034 0.966 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.159 0.841 47 H 0.133 0.867 48 H 0.134 0.866 49 H 0.159 0.841 50 H 0.133 0.867 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.464 -23.725 5.466 26.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.071 0.929 9 C -0.004 4.004 10 C -0.101 4.101 11 N -0.177 5.177 12 C -0.103 4.103 13 C 0.023 3.977 14 C -0.153 4.153 15 C -0.022 4.022 16 N -0.334 5.334 17 C -0.011 4.011 18 C -0.190 4.190 19 C -0.013 4.013 20 N -0.123 5.123 21 C -0.145 4.145 22 C -0.228 4.228 23 C -0.227 4.227 24 C -0.146 4.146 25 C 0.280 3.720 26 O -0.424 6.424 27 C -0.030 4.030 28 O -0.244 6.244 29 H 0.071 0.929 30 H 0.035 0.965 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.104 0.896 35 H 0.117 0.883 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.176 0.824 47 H 0.151 0.849 48 H 0.152 0.848 49 H 0.177 0.823 50 H 0.150 0.850 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.305 -24.033 5.052 26.633 hybrid contribution 1.498 1.043 0.362 1.861 sum 11.803 -22.990 5.413 26.404 Atomic orbital electron populations 1.69977 1.06029 1.26642 1.50341 1.25001 0.94833 0.99204 0.95242 0.86599 0.79774 0.83486 0.78151 1.20624 1.21176 1.19935 1.21181 0.92896 0.91082 1.51273 0.92851 1.18956 0.93738 0.89707 0.97987 1.22943 0.97292 0.90256 0.99605 1.69143 1.32126 1.01450 1.14960 1.23827 1.04300 0.88406 0.93720 1.22584 0.87943 0.91729 0.95473 1.24352 0.96688 0.94349 0.99953 1.22069 1.00540 0.82025 0.97529 1.47471 1.32146 1.17336 1.36434 1.21398 0.85388 0.96977 0.97341 1.22330 0.94011 1.00822 1.01850 1.21744 0.82580 1.01052 0.95920 1.44128 1.17474 1.28709 1.22034 1.21850 0.98920 1.02323 0.91396 1.20919 0.98137 1.01317 1.02459 1.20924 1.00933 1.03066 0.97818 1.21839 0.91756 0.97785 1.03245 1.21038 0.83333 0.87825 0.79783 1.90722 1.70612 1.18838 1.62202 1.22776 0.97698 0.87829 0.94701 1.88178 1.28081 1.41300 1.66816 0.92928 0.96515 0.95720 0.92024 0.94777 0.89618 0.88275 0.89747 0.90708 0.89319 0.89935 0.89984 0.89014 0.90574 0.90855 0.89121 0.89046 0.82389 0.84878 0.84843 0.82337 0.84976 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.53 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.03 0.86 5.30 -27.88 -0.15 0.71 16 10 C 0.03 0.53 4.75 -3.83 -0.02 0.51 16 11 N -0.45 -7.76 6.33 -244.69 -1.55 -9.31 16 12 C 0.03 0.37 7.15 -7.28 -0.05 0.32 16 13 C 0.06 0.74 1.22 -91.03 -0.11 0.63 16 14 C -0.02 -0.31 6.86 -7.27 -0.05 -0.36 16 15 C 0.10 0.87 5.90 -4.44 -0.03 0.84 16 16 N -0.60 -5.54 2.84 -174.72 -0.50 -6.03 16 17 C 0.11 0.78 5.33 -4.04 -0.02 0.76 16 18 C -0.15 -1.06 5.86 -26.73 -0.16 -1.22 16 19 C 0.11 0.64 6.09 -4.04 -0.02 0.61 16 20 N -0.45 -3.78 2.75 -117.12 -0.32 -4.11 16 21 C -0.02 -0.14 11.43 -16.74 -0.19 -0.33 16 22 C -0.20 -2.00 10.86 -39.78 -0.43 -2.43 16 23 C -0.20 -1.98 10.86 -39.78 -0.43 -2.41 16 24 C -0.02 -0.15 11.43 -16.75 -0.19 -0.34 16 25 C 0.49 5.62 7.58 -11.72 -0.09 5.53 16 26 O -0.55 -7.62 16.28 5.56 0.09 -7.53 16 27 C 0.05 0.53 6.69 35.75 0.24 0.77 16 28 O -0.33 -4.17 10.68 -35.23 -0.38 -4.55 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 33 H 0.03 0.63 7.31 -51.93 -0.38 0.25 16 34 H 0.09 1.04 7.38 -51.93 -0.38 0.65 16 35 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 36 H 0.08 1.10 7.10 -51.93 -0.37 0.74 16 37 H 0.07 0.89 7.67 -51.93 -0.40 0.49 16 38 H 0.09 0.62 7.86 -51.93 -0.41 0.21 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.37 8.04 -51.93 -0.42 -0.04 16 41 H 0.09 0.72 7.19 -51.93 -0.37 0.35 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 47 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 48 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 49 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 50 H 0.13 1.22 8.14 -51.93 -0.42 0.79 16 51 H 0.09 0.95 7.24 -51.92 -0.38 0.57 16 LS Contribution 414.30 15.07 6.24 6.24 Total: -1.00 -34.38 414.30 -11.37 -45.75 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -8.56 Total: -1.12 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -2.12 Total: -9.77 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: -1.63 Total: -45.35 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.29 Total: -12.08 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.38 -11.37 -45.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039709.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.505 kcal (2) G-P(sol) polarization free energy of solvation -34.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds