Wall clock time and date at job start Sat Apr 11 2020 08:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.47599 * 110.99785 * 266.10420 * 11 10 9 13 13 C 1.52866 * 87.78958 * 221.75968 * 12 11 10 14 14 C 1.47594 * 110.99966 * 170.00148 * 11 10 9 15 15 C 1.52454 * 114.30291 * 139.67397 * 13 12 11 16 16 N 1.46290 * 109.56650 * 177.66771 * 15 13 12 17 17 C 1.46509 * 118.72393 * 164.10203 * 16 15 13 18 18 C 1.52999 * 109.46427 * 269.99587 * 17 16 15 19 19 C 1.53004 * 109.46596 * 179.97438 * 18 17 16 20 20 N 1.46500 * 109.47103 * 179.97438 * 19 18 17 21 21 C 1.36345 * 125.63697 * 269.69688 * 20 19 18 22 22 C 1.34857 * 108.21656 * 179.82699 * 21 20 19 23 23 C 1.40897 * 107.41624 * 0.42680 * 22 21 20 24 24 C 1.34847 * 107.41805 * 359.73082 * 23 22 21 25 25 C 1.33713 * 122.55223 * 344.09198 * 16 15 13 26 26 O 1.21281 * 118.36135 * 183.28410 * 25 16 15 27 27 C 1.50163 * 123.27746 * 3.25964 * 25 16 15 28 28 O 1.42571 * 114.28570 * 271.62314 * 13 12 11 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 33 33 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 34 34 H 1.09003 * 113.49644 * 336.48874 * 12 11 10 35 35 H 1.08995 * 113.49808 * 107.02515 * 12 11 10 36 36 H 1.09004 * 113.49421 * 252.96318 * 14 11 10 37 37 H 1.08994 * 113.50269 * 23.50574 * 14 11 10 38 38 H 1.08997 * 109.45250 * 297.71442 * 15 13 12 39 39 H 1.09001 * 109.45117 * 57.65560 * 15 13 12 40 40 H 1.09002 * 109.46707 * 29.99329 * 17 16 15 41 41 H 1.09000 * 109.47077 * 149.99774 * 17 16 15 42 42 H 1.09004 * 109.46975 * 299.99452 * 18 17 16 43 43 H 1.09000 * 109.47339 * 60.00347 * 18 17 16 44 44 H 1.09001 * 109.47435 * 299.99867 * 19 18 17 45 45 H 1.09000 * 109.46922 * 60.00179 * 19 18 17 46 46 H 1.07993 * 125.88833 * 359.96118 * 21 20 19 47 47 H 1.07992 * 126.28914 * 180.15930 * 22 21 20 48 48 H 1.07991 * 126.29053 * 179.73583 * 23 22 21 49 49 H 1.08000 * 125.89043 * 180.02562 * 24 23 22 50 50 H 1.08998 * 109.35335 * 222.07436 * 27 25 16 51 51 H 1.09007 * 109.22468 * 102.45095 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 1.3266 -5.4456 1.3555 13 6 1.6572 -6.8378 0.8176 14 6 2.4213 -6.0697 -0.2610 15 6 2.5412 -7.6723 1.7376 16 7 2.7458 -8.9969 1.1515 17 6 3.8292 -9.8363 1.6692 18 6 5.1102 -9.5597 0.8795 19 6 6.2419 -10.4358 1.4206 20 7 7.4683 -10.1715 0.6642 21 6 7.8638 -10.8289 -0.4630 22 6 9.0373 -10.3024 -0.8683 23 6 9.3838 -9.2893 0.0476 24 6 8.4059 -9.2313 0.9742 25 6 1.9822 -9.4714 0.1617 26 8 2.1801 -10.6032 -0.2267 27 6 0.8915 -8.6732 -0.4927 28 8 0.5290 -7.5622 0.3326 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 2.8718 -3.6005 -0.9002 33 1 2.8717 -3.6084 0.8798 34 1 2.0641 -5.0666 2.0630 35 1 0.3038 -5.3523 1.7206 36 1 2.3199 -6.5018 -1.2567 37 1 3.4574 -5.8610 0.0055 38 1 3.5043 -7.1775 1.8624 39 1 2.0580 -7.7761 2.7092 40 1 3.9947 -9.6074 2.7220 41 1 3.5572 -10.8865 1.5640 42 1 4.9446 -9.7886 -0.1733 43 1 5.3823 -8.5094 0.9847 44 1 6.4074 -10.2066 2.4733 45 1 5.9701 -11.4861 1.3158 46 1 7.3283 -11.6312 -0.9487 47 1 9.6088 -10.6050 -1.7332 48 1 10.2696 -8.6726 0.0136 49 1 8.3711 -8.5562 1.8166 50 1 0.0198 -9.3095 -0.6450 51 1 1.2440 -8.3068 -1.4569 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274039709.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:24:24 Heat of formation + Delta-G solvation = -1.295777 kcal Electronic energy + Delta-G solvation = -30506.986991 eV Core-core repulsion = 26408.084022 eV Total energy + Delta-G solvation = -4098.902969 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.53043 -41.95256 -40.70137 -37.97629 -37.29434 -35.47583 -35.05849 -32.97737 -31.58738 -30.27299 -29.64344 -28.82894 -27.37009 -27.06151 -26.10039 -24.87035 -23.32300 -22.23139 -21.42577 -21.35186 -20.81236 -19.67447 -18.72256 -18.52525 -18.42022 -17.60134 -17.19828 -17.01797 -16.58753 -16.29451 -16.01828 -15.95119 -15.59050 -15.43491 -15.18621 -14.80635 -14.55389 -14.46106 -14.24885 -14.20431 -13.92091 -13.54566 -13.41983 -13.34619 -13.18730 -13.15853 -12.96334 -12.82046 -12.79148 -12.76014 -12.56515 -12.42527 -11.97191 -11.79627 -11.71186 -11.39780 -11.28782 -11.15296 -10.55653 -10.50710 -9.99494 -9.71666 -9.47967 -9.05594 -8.19531 -6.31658 1.28762 1.39188 1.41051 1.42433 1.53234 1.68393 2.13702 2.14927 2.33070 2.40663 2.94777 3.14000 3.16584 3.24177 3.54956 3.72750 3.89184 3.97571 4.06033 4.11623 4.16951 4.17888 4.28979 4.29571 4.33343 4.39068 4.39857 4.44852 4.51679 4.55057 4.59149 4.63745 4.68044 4.70254 4.77801 4.79659 4.91193 5.05992 5.06882 5.28522 5.33637 5.40308 5.44258 5.46792 5.72257 5.78458 5.82054 6.09291 6.09804 6.19157 6.27341 6.33664 6.54559 6.86517 6.86770 7.38068 8.92563 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009584 B = 0.002344 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.869214 B =11943.938780 C =14253.232305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.040 3.960 10 C 0.046 3.954 11 N -0.492 5.492 12 C 0.024 3.976 13 C 0.076 3.924 14 C -0.020 4.020 15 C 0.107 3.893 16 N -0.597 5.597 17 C 0.112 3.888 18 C -0.138 4.138 19 C 0.109 3.891 20 N -0.449 5.449 21 C -0.028 4.028 22 C -0.227 4.227 23 C -0.230 4.230 24 C -0.018 4.018 25 C 0.489 3.511 26 O -0.577 6.577 27 C 0.048 3.952 28 O -0.347 6.347 29 H 0.263 0.737 30 H -0.009 1.009 31 H -0.016 1.016 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.082 0.918 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.119 0.881 45 H 0.099 0.901 46 H 0.171 0.829 47 H 0.137 0.863 48 H 0.139 0.861 49 H 0.183 0.817 50 H 0.143 0.857 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.364 -23.993 7.420 28.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.582 4.582 8 H 0.082 0.918 9 C 0.002 3.998 10 C -0.082 4.082 11 N -0.214 5.214 12 C -0.105 4.105 13 C 0.035 3.965 14 C -0.149 4.149 15 C -0.016 4.016 16 N -0.328 5.328 17 C -0.010 4.010 18 C -0.178 4.178 19 C -0.012 4.012 20 N -0.124 5.124 21 C -0.158 4.158 22 C -0.252 4.252 23 C -0.255 4.255 24 C -0.148 4.148 25 C 0.278 3.722 26 O -0.458 6.458 27 C -0.030 4.030 28 O -0.265 6.265 29 H 0.072 0.928 30 H 0.009 0.991 31 H 0.002 0.998 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.127 0.873 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.133 0.867 39 H 0.121 0.879 40 H 0.136 0.864 41 H 0.100 0.900 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.137 0.863 45 H 0.118 0.882 46 H 0.188 0.812 47 H 0.155 0.845 48 H 0.157 0.843 49 H 0.200 0.800 50 H 0.161 0.839 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.222 -24.310 7.027 28.102 hybrid contribution 0.842 1.097 -0.269 1.409 sum 13.064 -23.213 6.758 27.481 Atomic orbital electron populations 1.70127 1.07944 1.27753 1.51469 1.25999 0.95716 1.03455 0.94701 0.85432 0.78768 0.78339 0.78403 1.20060 1.20847 1.18292 1.21647 0.93592 0.92153 1.50772 0.91815 1.18790 0.94154 0.92111 0.94713 1.22555 0.95664 0.89815 1.00204 1.69026 1.33421 1.01288 1.17702 1.23904 1.04240 0.89821 0.92580 1.22443 0.87652 0.91405 0.94950 1.24406 0.97250 0.92657 1.00571 1.22134 1.01254 0.81150 0.97059 1.47526 1.31999 1.17729 1.35568 1.21565 0.84276 0.96113 0.99064 1.22179 0.94524 1.01006 1.00069 1.21919 0.81077 1.01335 0.96914 1.44334 1.18027 1.28263 1.21822 1.22142 0.98981 1.02776 0.91914 1.21182 0.98908 1.01980 1.03097 1.21198 1.01938 1.03726 0.98607 1.22251 0.91342 0.97771 1.03468 1.21059 0.83564 0.87395 0.80199 1.90711 1.71604 1.20073 1.63430 1.22854 0.98323 0.87412 0.94443 1.88150 1.29142 1.41927 1.67329 0.92812 0.99109 0.99772 0.92326 0.93074 0.87326 0.89813 0.90199 0.88654 0.86669 0.87860 0.86411 0.89975 0.93661 0.90792 0.86304 0.88240 0.81184 0.84494 0.84311 0.79953 0.83913 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 2 C 0.00 -0.05 5.46 84.66 0.46 0.42 16 3 Si 0.97 43.59 29.54 68.60 2.03 45.62 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 7 C -0.54 -30.37 9.11 25.60 0.23 -30.14 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.04 2.10 5.30 29.85 0.16 2.26 16 10 C 0.05 1.79 4.75 86.30 0.41 2.20 16 11 N -0.49 -16.62 6.33 -928.83 -5.88 -22.50 16 12 C 0.02 0.62 7.15 83.68 0.60 1.21 16 13 C 0.08 1.62 1.22 -11.06 -0.01 1.60 16 14 C -0.02 -0.49 6.86 83.69 0.57 0.09 16 15 C 0.11 1.41 5.90 86.24 0.51 1.92 16 16 N -0.60 -9.30 2.84 -825.67 -2.34 -11.64 16 17 C 0.11 1.18 5.33 86.38 0.46 1.64 16 18 C -0.14 -1.57 5.86 30.59 0.18 -1.39 16 19 C 0.11 0.93 6.09 86.38 0.53 1.46 16 20 N -0.45 -6.69 2.75 -524.46 -1.44 -8.13 16 21 C -0.03 -0.49 11.43 83.21 0.95 0.46 16 22 C -0.23 -4.42 10.86 22.14 0.24 -4.18 16 23 C -0.23 -4.33 10.86 22.14 0.24 -4.09 16 24 C -0.02 -0.29 11.43 83.21 0.95 0.66 16 25 C 0.49 10.52 7.58 87.65 0.66 11.18 16 26 O -0.58 -15.76 16.28 -3.03 -0.05 -15.81 16 27 C 0.05 1.01 6.69 71.07 0.48 1.48 16 28 O -0.35 -8.57 10.68 -148.98 -1.59 -10.16 16 29 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 30 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 31 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 32 H 0.06 2.30 8.08 -2.38 -0.02 2.28 16 33 H 0.05 1.81 7.31 -2.39 -0.02 1.79 16 34 H 0.11 2.33 7.38 -2.39 -0.02 2.31 16 35 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.08 2.02 7.10 -2.38 -0.02 2.00 16 37 H 0.10 1.95 7.67 -2.39 -0.02 1.94 16 38 H 0.12 1.00 7.86 -2.39 -0.02 0.98 16 39 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.12 0.45 8.04 -2.39 -0.02 0.44 16 41 H 0.08 1.10 7.19 -2.39 -0.02 1.08 16 42 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 47 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 48 H 0.14 2.27 8.06 -2.92 -0.02 2.25 16 49 H 0.18 1.81 8.06 -2.91 -0.02 1.78 16 50 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 51 H 0.09 1.91 7.24 -2.38 -0.02 1.89 16 Total: -1.00 -77.38 414.30 -0.48 -77.86 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.90 Total: 14.73 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 7.62 Total: -13.20 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -9.38 Total: -99.04 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -1.64 Total: -25.97 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -77.38 -0.48 -77.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039709.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.565 kcal (2) G-P(sol) polarization free energy of solvation -77.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds