Wall clock time and date at job start Sat Apr 11 2020 08:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99897 * 2 1 4 4 H 1.48494 * 109.47489 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47029 * 299.99858 * 3 2 1 6 6 H 1.48505 * 109.47109 * 59.99603 * 3 2 1 7 7 C 1.37872 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00114 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99853 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46843 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.46895 * 180.02562 * 10 9 7 12 12 C 1.47910 * 110.99929 * 297.15904 * 11 10 9 13 13 C 1.53961 * 113.33204 * 192.41749 * 12 11 10 14 14 C 1.50439 * 113.12190 * 317.61566 * 13 12 11 15 15 C 1.54789 * 109.07500 * 91.58721 * 14 13 12 16 16 C 1.54867 * 107.54083 * 160.09206 * 15 14 13 17 17 C 1.54420 * 101.81600 * 220.45763 * 16 15 14 18 18 N 1.46740 * 105.47132 * 25.54541 * 17 16 15 19 19 C 1.46496 * 124.34751 * 162.94327 * 18 17 16 20 20 C 1.50707 * 109.47033 * 90.00403 * 19 18 17 21 21 C 1.41378 * 128.00355 * 269.67718 * 20 19 18 22 22 N 1.30178 * 106.39309 * 179.89162 * 21 20 19 23 23 O 1.20920 * 111.60386 * 0.39495 * 22 21 20 24 24 C 1.34045 * 111.56768 * 359.74407 * 23 22 21 25 25 C 1.34363 * 111.30593 * 342.94523 * 18 17 16 26 26 O 1.21283 * 124.89936 * 180.32808 * 25 18 17 27 27 C 1.46058 * 111.54943 * 283.47254 * 15 14 13 28 28 C 1.44333 * 110.99936 * 169.99744 * 11 10 9 29 29 H 0.96995 * 119.99846 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.46617 * 60.00245 * 9 7 2 31 31 H 1.08994 * 109.47378 * 300.00307 * 9 7 2 32 32 H 1.08997 * 109.47558 * 60.00522 * 10 9 7 33 33 H 1.09004 * 109.47283 * 300.00301 * 10 9 7 34 34 H 1.08992 * 108.71087 * 313.41107 * 12 11 10 35 35 H 1.09001 * 108.70692 * 71.55142 * 12 11 10 36 36 H 1.08998 * 108.75352 * 78.55848 * 13 12 11 37 37 H 1.09002 * 108.74930 * 196.79914 * 13 12 11 38 38 H 1.09004 * 109.53606 * 331.70878 * 14 13 12 39 39 H 1.08997 * 109.53928 * 211.46349 * 14 13 12 40 40 H 1.08999 * 110.96060 * 338.59128 * 16 15 14 41 41 H 1.08995 * 110.95743 * 102.32247 * 16 15 14 42 42 H 1.08998 * 110.24402 * 144.54622 * 17 16 15 43 43 H 1.09001 * 110.24497 * 266.54677 * 17 16 15 44 44 H 1.09000 * 109.47152 * 209.99780 * 19 18 17 45 45 H 1.08996 * 109.47242 * 330.00290 * 19 18 17 46 46 H 1.08004 * 126.80272 * 0.03316 * 21 20 19 47 47 H 1.07993 * 126.77625 * 180.02562 * 24 23 22 48 48 H 1.08996 * 108.80158 * 182.07234 * 27 15 14 49 49 H 1.09003 * 108.79749 * 300.31785 * 27 15 14 50 50 H 1.09004 * 109.71417 * 101.70907 * 28 11 10 51 51 H 1.08997 * 109.74746 * 341.09337 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 7 1.5109 -4.9342 0.0033 12 6 0.6996 -5.0773 1.2317 13 6 0.1506 -6.5010 1.4374 14 6 -0.3736 -7.1207 0.1708 15 6 0.7658 -7.9141 -0.5134 16 6 0.1113 -8.9242 -1.4879 17 6 0.9840 -10.1802 -1.2747 18 7 1.5319 -10.0507 0.0804 19 6 2.1180 -11.1550 0.8440 20 6 3.5962 -11.2327 0.5608 21 6 4.2513 -11.9754 -0.4482 22 7 5.5237 -11.7357 -0.3133 23 8 5.7397 -10.9832 0.6082 24 6 4.6049 -10.6119 1.2176 25 6 1.4269 -8.7892 0.5310 26 8 1.8068 -8.4065 1.6173 27 6 1.7067 -7.0256 -1.1905 28 6 2.4016 -6.0458 -0.2298 29 1 -0.4850 0.8400 0.0004 30 1 0.6242 -2.5574 -0.8880 31 1 0.6248 -2.5563 0.8919 32 1 2.8720 -3.6035 0.8927 33 1 2.8721 -3.6050 -0.8873 34 1 1.3161 -4.8128 2.0907 35 1 -0.1405 -4.3848 1.1785 36 1 0.9483 -7.1306 1.8316 37 1 -0.6579 -6.4626 2.1675 38 1 -0.7258 -6.3369 -0.4999 39 1 -1.1959 -7.7955 0.4084 40 1 -0.9250 -9.1177 -1.2110 41 1 0.1790 -8.5725 -2.5174 42 1 0.3741 -11.0805 -1.3505 43 1 1.7910 -10.2076 -2.0068 44 1 1.9607 -10.9841 1.9090 45 1 1.6424 -12.0913 0.5521 46 1 3.7877 -12.6133 -1.1862 47 1 4.5132 -9.9484 2.0647 48 1 2.4664 -7.6301 -1.6859 49 1 1.1681 -6.4539 -1.9463 50 1 2.6185 -6.5472 0.7134 51 1 3.3287 -5.6873 -0.6772 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040158.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:24:28 Heat of formation + Delta-G solvation = 54.672656 kcal Electronic energy + Delta-G solvation = -31896.899523 eV Core-core repulsion = 27800.423527 eV Total energy + Delta-G solvation = -4096.475996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.28538 -41.63240 -38.04674 -36.94003 -35.70861 -34.14750 -32.91849 -32.34137 -31.90822 -30.48370 -29.08609 -27.44002 -26.34065 -25.29993 -23.95352 -23.33162 -22.52608 -22.21044 -21.07791 -20.70669 -19.19201 -19.00225 -18.26869 -17.88609 -16.83458 -16.57924 -16.34237 -15.67836 -15.29207 -15.27236 -14.98403 -14.43790 -14.30254 -14.05671 -13.88027 -13.79075 -13.33832 -13.25160 -12.90060 -12.82369 -12.73837 -12.51133 -12.28469 -12.14858 -11.86059 -11.83337 -11.60183 -11.29866 -10.99916 -10.96374 -10.80793 -10.65707 -10.58595 -10.46098 -10.23666 -10.17960 -9.95458 -9.72679 -9.25442 -9.21760 -9.02928 -8.66604 -8.27552 -7.43316 -5.94566 -3.96296 1.10796 1.75514 2.37671 2.80513 2.92240 3.34195 3.41447 3.45816 3.86409 4.01554 4.18168 4.28058 4.45887 4.47451 4.53993 4.67864 4.69763 4.72770 5.00118 5.02520 5.15033 5.15747 5.21687 5.30808 5.41358 5.45024 5.51108 5.54817 5.59503 5.64336 5.74711 5.90284 5.91576 5.96785 6.10076 6.17172 6.19806 6.33127 6.41379 6.46176 6.51912 6.60643 6.64959 6.73641 7.08315 7.14757 7.67188 7.77029 7.86671 7.94343 7.99216 8.05984 8.17769 8.51127 9.11588 9.67012 11.16875 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016638 B = 0.002444 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.497091 B =11453.026987 C =12347.999984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.519 4.519 8 H 0.053 0.947 9 C 0.028 3.972 10 C 0.068 3.932 11 N -0.546 5.546 12 C 0.073 3.927 13 C -0.196 4.196 14 C -0.086 4.086 15 C -0.077 4.077 16 C -0.129 4.129 17 C 0.103 3.897 18 N -0.617 5.617 19 C 0.203 3.797 20 C -0.232 4.232 21 C 0.001 3.999 22 N -0.366 5.366 23 O 0.096 5.904 24 C -0.027 4.027 25 C 0.530 3.470 26 O -0.503 6.503 27 C -0.092 4.092 28 C 0.056 3.944 29 H 0.259 0.741 30 H 0.023 0.977 31 H 0.016 0.984 32 H 0.016 0.984 33 H 0.058 0.942 34 H 0.024 0.976 35 H 0.070 0.930 36 H 0.136 0.864 37 H 0.053 0.947 38 H 0.083 0.917 39 H 0.054 0.946 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.189 0.811 47 H 0.218 0.782 48 H 0.052 0.948 49 H 0.088 0.912 50 H 0.052 0.948 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.194 -28.808 -1.140 28.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.059 4.059 11 N -0.270 5.270 12 C -0.054 4.054 13 C -0.233 4.233 14 C -0.124 4.124 15 C -0.081 4.081 16 C -0.167 4.167 17 C -0.020 4.020 18 N -0.350 5.350 19 C 0.081 3.919 20 C -0.237 4.237 21 C -0.178 4.178 22 N -0.070 5.070 23 O 0.032 5.968 24 C -0.110 4.110 25 C 0.319 3.681 26 O -0.380 6.380 27 C -0.131 4.131 28 C -0.073 4.073 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.077 0.923 34 H 0.042 0.958 35 H 0.088 0.912 36 H 0.152 0.848 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.115 0.885 45 H 0.112 0.888 46 H 0.206 0.794 47 H 0.235 0.765 48 H 0.071 0.929 49 H 0.106 0.894 50 H 0.070 0.930 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.069 -28.965 -1.550 29.080 hybrid contribution 0.043 1.102 0.794 1.359 sum 2.112 -27.863 -0.756 27.953 Atomic orbital electron populations 1.69987 1.05986 1.26330 1.51019 1.24991 0.94818 0.99114 0.95443 0.86565 0.80119 0.83954 0.77524 1.19804 1.21031 1.21088 1.21264 0.92996 0.91187 1.50373 0.92847 1.19092 0.94018 0.90146 0.97708 1.22368 0.96437 0.88521 0.98554 1.60865 1.26429 1.02352 1.37390 1.22243 0.97235 0.96148 0.89766 1.22631 1.04449 0.98625 0.97570 1.21335 0.94223 0.98729 0.98098 1.20371 0.97811 0.95242 0.94634 1.22927 0.99306 0.93425 1.01014 1.22107 0.97228 0.99563 0.83103 1.48401 1.60277 1.09173 1.17169 1.19440 0.85349 0.89915 0.97224 1.21818 0.98591 1.03509 0.99780 1.24964 0.89501 1.02391 1.00989 1.73905 1.19240 1.08600 1.05279 1.84857 1.32652 1.46363 1.32892 1.26061 0.84172 1.00343 1.00421 1.21114 0.77412 0.82297 0.87226 1.90259 1.49988 1.74498 1.23297 1.20308 0.97436 0.96347 0.98960 1.21745 0.94450 0.92578 0.98518 0.93147 0.95839 0.96527 0.96542 0.92337 0.95763 0.91203 0.84775 0.92798 0.89880 0.92742 0.89605 0.88861 0.90316 0.91249 0.88477 0.88830 0.79435 0.76524 0.92923 0.89387 0.93008 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.29 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.74 4.82 -27.88 -0.13 0.60 16 10 C 0.07 1.49 4.73 -3.82 -0.02 1.47 16 11 N -0.55 -10.18 4.04 -234.72 -0.95 -11.12 16 12 C 0.07 1.35 4.79 -2.77 -0.01 1.34 16 13 C -0.20 -2.97 5.13 -27.51 -0.14 -3.11 16 14 C -0.09 -1.08 4.55 -27.07 -0.12 -1.21 16 15 C -0.08 -0.83 0.52 -156.66 -0.08 -0.91 16 16 C -0.13 -0.91 6.21 -25.00 -0.16 -1.07 16 17 C 0.10 0.60 7.34 -3.17 -0.02 0.57 16 18 N -0.62 -4.93 2.91 -173.79 -0.51 -5.44 16 19 C 0.20 1.28 6.51 -5.19 -0.03 1.24 16 20 C -0.23 -1.74 5.91 -104.42 -0.62 -2.36 16 21 C 0.00 0.01 12.16 -17.06 -0.21 -0.20 16 22 N -0.37 -3.83 12.07 30.36 0.37 -3.47 16 23 O 0.10 0.96 11.20 17.16 0.19 1.15 16 24 C -0.03 -0.22 12.26 29.74 0.36 0.14 16 25 C 0.53 5.94 6.26 -10.81 -0.07 5.87 16 26 O -0.50 -7.02 12.48 5.55 0.07 -6.95 16 27 C -0.09 -1.14 4.17 -29.60 -0.12 -1.27 16 28 C 0.06 0.88 5.35 -4.77 -0.03 0.86 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.02 0.47 6.73 -51.93 -0.35 0.12 16 32 H 0.02 0.37 8.04 -51.93 -0.42 -0.05 16 33 H 0.06 1.26 7.79 -51.93 -0.40 0.85 16 34 H 0.02 0.47 7.94 -51.93 -0.41 0.06 16 35 H 0.07 1.42 6.98 -51.93 -0.36 1.06 16 36 H 0.14 2.13 2.92 -57.54 -0.17 1.96 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.17 7.82 -51.93 -0.41 0.77 16 39 H 0.05 0.59 7.56 -51.93 -0.39 0.20 16 40 H 0.09 0.54 7.41 -51.93 -0.38 0.16 16 41 H 0.09 0.58 7.91 -51.93 -0.41 0.17 16 42 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.10 0.64 7.93 -51.93 -0.41 0.23 16 45 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.19 0.91 8.06 -52.48 -0.42 0.48 16 47 H 0.22 1.38 8.06 -52.49 -0.42 0.96 16 48 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.09 1.16 8.08 -51.93 -0.42 0.74 16 50 H 0.05 0.85 5.12 -51.93 -0.27 0.59 16 51 H 0.06 0.97 7.41 -51.93 -0.38 0.59 16 LS Contribution 392.78 15.07 5.92 5.92 Total: -1.00 -33.86 392.78 -9.12 -42.97 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -8.11 Total: -1.73 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -1.81 Total: -11.79 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.35 Total: -46.58 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: 0.26 Total: -5.80 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.86 -9.12 -42.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040158.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.645 kcal (2) G-P(sol) polarization free energy of solvation -33.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds