Wall clock time and date at job start Sat Apr 11 2020 08:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99897 * 2 1 4 4 H 1.48494 * 109.47489 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47029 * 299.99858 * 3 2 1 6 6 H 1.48505 * 109.47109 * 59.99603 * 3 2 1 7 7 C 1.37872 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00114 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99853 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46843 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.46895 * 180.02562 * 10 9 7 12 12 C 1.47910 * 110.99929 * 297.15904 * 11 10 9 13 13 C 1.53961 * 113.33204 * 192.41749 * 12 11 10 14 14 C 1.50439 * 113.12190 * 317.61566 * 13 12 11 15 15 C 1.54789 * 109.07500 * 91.58721 * 14 13 12 16 16 C 1.54867 * 107.54083 * 160.09206 * 15 14 13 17 17 C 1.54420 * 101.81600 * 220.45763 * 16 15 14 18 18 N 1.46740 * 105.47132 * 25.54541 * 17 16 15 19 19 C 1.46496 * 124.34751 * 162.94327 * 18 17 16 20 20 C 1.50707 * 109.47033 * 90.00403 * 19 18 17 21 21 C 1.41378 * 128.00355 * 269.67718 * 20 19 18 22 22 N 1.30178 * 106.39309 * 179.89162 * 21 20 19 23 23 O 1.20920 * 111.60386 * 0.39495 * 22 21 20 24 24 C 1.34045 * 111.56768 * 359.74407 * 23 22 21 25 25 C 1.34363 * 111.30593 * 342.94523 * 18 17 16 26 26 O 1.21283 * 124.89936 * 180.32808 * 25 18 17 27 27 C 1.46058 * 111.54943 * 283.47254 * 15 14 13 28 28 C 1.44333 * 110.99936 * 169.99744 * 11 10 9 29 29 H 0.96995 * 119.99846 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.46617 * 60.00245 * 9 7 2 31 31 H 1.08994 * 109.47378 * 300.00307 * 9 7 2 32 32 H 1.08997 * 109.47558 * 60.00522 * 10 9 7 33 33 H 1.09004 * 109.47283 * 300.00301 * 10 9 7 34 34 H 1.08992 * 108.71087 * 313.41107 * 12 11 10 35 35 H 1.09001 * 108.70692 * 71.55142 * 12 11 10 36 36 H 1.08998 * 108.75352 * 78.55848 * 13 12 11 37 37 H 1.09002 * 108.74930 * 196.79914 * 13 12 11 38 38 H 1.09004 * 109.53606 * 331.70878 * 14 13 12 39 39 H 1.08997 * 109.53928 * 211.46349 * 14 13 12 40 40 H 1.08999 * 110.96060 * 338.59128 * 16 15 14 41 41 H 1.08995 * 110.95743 * 102.32247 * 16 15 14 42 42 H 1.08998 * 110.24402 * 144.54622 * 17 16 15 43 43 H 1.09001 * 110.24497 * 266.54677 * 17 16 15 44 44 H 1.09000 * 109.47152 * 209.99780 * 19 18 17 45 45 H 1.08996 * 109.47242 * 330.00290 * 19 18 17 46 46 H 1.08004 * 126.80272 * 0.03316 * 21 20 19 47 47 H 1.07993 * 126.77625 * 180.02562 * 24 23 22 48 48 H 1.08996 * 108.80158 * 182.07234 * 27 15 14 49 49 H 1.09003 * 108.79749 * 300.31785 * 27 15 14 50 50 H 1.09004 * 109.71417 * 101.70907 * 28 11 10 51 51 H 1.08997 * 109.74746 * 341.09337 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 7 1.5109 -4.9342 0.0033 12 6 0.6996 -5.0773 1.2317 13 6 0.1506 -6.5010 1.4374 14 6 -0.3736 -7.1207 0.1708 15 6 0.7658 -7.9141 -0.5134 16 6 0.1113 -8.9242 -1.4879 17 6 0.9840 -10.1802 -1.2747 18 7 1.5319 -10.0507 0.0804 19 6 2.1180 -11.1550 0.8440 20 6 3.5962 -11.2327 0.5608 21 6 4.2513 -11.9754 -0.4482 22 7 5.5237 -11.7357 -0.3133 23 8 5.7397 -10.9832 0.6082 24 6 4.6049 -10.6119 1.2176 25 6 1.4269 -8.7892 0.5310 26 8 1.8068 -8.4065 1.6173 27 6 1.7067 -7.0256 -1.1905 28 6 2.4016 -6.0458 -0.2298 29 1 -0.4850 0.8400 0.0004 30 1 0.6242 -2.5574 -0.8880 31 1 0.6248 -2.5563 0.8919 32 1 2.8720 -3.6035 0.8927 33 1 2.8721 -3.6050 -0.8873 34 1 1.3161 -4.8128 2.0907 35 1 -0.1405 -4.3848 1.1785 36 1 0.9483 -7.1306 1.8316 37 1 -0.6579 -6.4626 2.1675 38 1 -0.7258 -6.3369 -0.4999 39 1 -1.1959 -7.7955 0.4084 40 1 -0.9250 -9.1177 -1.2110 41 1 0.1790 -8.5725 -2.5174 42 1 0.3741 -11.0805 -1.3505 43 1 1.7910 -10.2076 -2.0068 44 1 1.9607 -10.9841 1.9090 45 1 1.6424 -12.0913 0.5521 46 1 3.7877 -12.6133 -1.1862 47 1 4.5132 -9.9484 2.0647 48 1 2.4664 -7.6301 -1.6859 49 1 1.1681 -6.4539 -1.9463 50 1 2.6185 -6.5472 0.7134 51 1 3.3287 -5.6873 -0.6772 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040158.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:24:27 Heat of formation + Delta-G solvation = 33.293798 kcal Electronic energy + Delta-G solvation = -31897.826580 eV Core-core repulsion = 27800.423527 eV Total energy + Delta-G solvation = -4097.403053 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.90953 -42.47440 -39.29595 -37.74361 -36.72163 -35.35942 -34.58551 -33.33506 -32.87302 -31.87243 -30.31260 -28.04149 -27.76030 -26.46740 -25.74770 -23.99748 -23.32887 -23.03210 -22.57646 -21.75557 -20.48421 -19.97592 -18.88401 -18.59374 -18.54035 -17.52886 -17.23563 -16.78902 -16.65567 -16.46370 -16.01557 -15.91751 -15.48113 -14.99936 -14.70489 -14.58651 -14.56006 -14.34086 -14.20036 -14.09412 -13.76105 -13.61759 -13.26475 -13.23901 -13.04236 -12.96366 -12.86122 -12.81730 -12.40872 -12.27787 -12.13725 -12.08929 -11.82891 -11.62470 -11.37451 -11.35175 -11.29607 -11.23653 -11.01950 -10.59469 -10.55013 -9.95055 -9.57961 -9.01897 -8.20627 -6.32073 0.48512 1.18359 1.38645 1.39318 1.52788 1.55996 2.21589 2.32806 2.39503 3.06407 3.12304 3.30892 3.39422 3.49816 3.72419 3.84128 3.95149 3.99959 4.08781 4.18073 4.20801 4.28755 4.35338 4.47485 4.51865 4.61944 4.63535 4.64993 4.71063 4.74362 4.75718 4.78615 4.82751 4.95595 5.00102 5.03750 5.09147 5.11620 5.17063 5.26044 5.27692 5.32528 5.42678 5.46238 5.51029 5.67992 5.78638 5.80651 6.11984 6.21474 6.36737 6.52560 6.85073 7.20137 7.24643 7.36843 8.91774 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016638 B = 0.002444 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.497091 B =11453.026987 C =12347.999984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.057 0.943 9 C 0.040 3.960 10 C 0.082 3.918 11 N -0.544 5.544 12 C 0.078 3.922 13 C -0.192 4.192 14 C -0.083 4.083 15 C -0.083 4.083 16 C -0.121 4.121 17 C 0.101 3.899 18 N -0.608 5.608 19 C 0.202 3.798 20 C -0.230 4.230 21 C 0.013 3.987 22 N -0.401 5.401 23 O 0.073 5.927 24 C -0.037 4.037 25 C 0.523 3.477 26 O -0.539 6.539 27 C -0.082 4.082 28 C 0.053 3.947 29 H 0.264 0.736 30 H -0.005 1.005 31 H -0.012 1.012 32 H 0.008 0.992 33 H 0.065 0.935 34 H 0.003 0.997 35 H 0.039 0.961 36 H 0.139 0.861 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.114 0.886 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.131 0.869 46 H 0.220 0.780 47 H 0.226 0.774 48 H 0.073 0.927 49 H 0.081 0.919 50 H 0.045 0.955 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.117 -31.169 -2.614 31.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.204 1.204 7 C -0.583 4.583 8 H 0.076 0.924 9 C 0.002 3.998 10 C -0.045 4.045 11 N -0.269 5.269 12 C -0.049 4.049 13 C -0.228 4.228 14 C -0.121 4.121 15 C -0.086 4.086 16 C -0.158 4.158 17 C -0.020 4.020 18 N -0.339 5.339 19 C 0.080 3.920 20 C -0.235 4.235 21 C -0.166 4.166 22 N -0.109 5.109 23 O 0.013 5.987 24 C -0.120 4.120 25 C 0.313 3.687 26 O -0.419 6.419 27 C -0.121 4.121 28 C -0.075 4.075 29 H 0.073 0.927 30 H 0.013 0.987 31 H 0.007 0.993 32 H 0.027 0.973 33 H 0.084 0.916 34 H 0.022 0.978 35 H 0.057 0.943 36 H 0.155 0.845 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.132 0.868 43 H 0.097 0.903 44 H 0.110 0.890 45 H 0.149 0.851 46 H 0.237 0.763 47 H 0.242 0.758 48 H 0.091 0.909 49 H 0.100 0.900 50 H 0.064 0.936 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.001 -31.363 -3.033 31.573 hybrid contribution 0.028 1.801 1.272 2.205 sum 2.029 -29.562 -1.762 29.684 Atomic orbital electron populations 1.70122 1.07791 1.27696 1.51493 1.25972 0.95786 1.03317 0.94611 0.85372 0.78976 0.78629 0.77889 1.18701 1.20032 1.20368 1.21659 0.93426 0.92410 1.50835 0.92430 1.18883 0.94104 0.91882 0.94892 1.22056 0.95199 0.88851 0.98416 1.60851 1.26670 1.02019 1.37346 1.22188 0.95833 0.98023 0.88871 1.22639 1.04623 0.96187 0.99349 1.21304 0.95718 0.98791 0.96321 1.20339 0.96934 0.95721 0.95606 1.22937 0.99932 0.92516 1.00460 1.22353 0.97710 1.00236 0.81708 1.48441 1.59148 1.08301 1.18000 1.19671 0.84597 0.90712 0.96988 1.21999 0.99053 1.03031 0.99413 1.25497 0.88675 1.01590 1.00885 1.73904 1.20908 1.09892 1.06215 1.84827 1.33495 1.46991 1.33377 1.26416 0.84268 1.00513 1.00763 1.21147 0.77362 0.83489 0.86741 1.90219 1.51663 1.75263 1.24741 1.20184 0.98062 0.95897 0.97916 1.21870 0.94393 0.92016 0.99247 0.92738 0.98663 0.99319 0.97349 0.91638 0.97839 0.94263 0.84535 0.92756 0.91798 0.90434 0.88313 0.87652 0.86776 0.90320 0.89025 0.85073 0.76342 0.75755 0.90857 0.90032 0.93626 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.37 13.29 21.45 0.28 -58.09 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.97 45.61 29.54 68.60 2.03 47.63 16 4 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.54 -32.48 9.11 25.60 0.23 -32.24 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.04 2.25 4.82 29.85 0.14 2.39 16 10 C 0.08 3.78 4.73 86.30 0.41 4.19 16 11 N -0.54 -21.25 4.04 -896.52 -3.62 -24.87 16 12 C 0.08 3.09 4.79 86.43 0.41 3.51 16 13 C -0.19 -5.96 5.13 30.09 0.15 -5.80 16 14 C -0.08 -2.04 4.55 30.38 0.14 -1.90 16 15 C -0.08 -1.62 0.52 -53.58 -0.03 -1.64 16 16 C -0.12 -1.22 6.21 31.71 0.20 -1.02 16 17 C 0.10 0.66 7.34 86.82 0.64 1.30 16 18 N -0.61 -7.47 2.91 -822.37 -2.40 -9.86 16 19 C 0.20 1.81 6.51 85.64 0.56 2.37 16 20 C -0.23 -2.88 5.91 -19.73 -0.12 -3.00 16 21 C 0.01 0.17 12.16 85.71 1.04 1.21 16 22 N -0.40 -7.94 12.07 -59.26 -0.72 -8.65 16 23 O 0.07 1.44 11.20 71.58 0.80 2.24 16 24 C -0.04 -0.58 12.26 67.17 0.82 0.24 16 25 C 0.52 10.66 6.26 87.96 0.55 11.21 16 26 O -0.54 -14.70 12.48 -3.04 -0.04 -14.74 16 27 C -0.08 -1.93 4.17 28.74 0.12 -1.81 16 28 C 0.05 1.69 5.35 87.06 0.47 2.15 16 29 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 30 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 31 H -0.01 -0.71 6.73 -2.39 -0.02 -0.72 16 32 H 0.01 0.39 8.04 -2.39 -0.02 0.37 16 33 H 0.07 2.90 7.79 -2.39 -0.02 2.88 16 34 H 0.00 0.14 7.94 -2.39 -0.02 0.12 16 35 H 0.04 1.74 6.98 -2.39 -0.02 1.73 16 36 H 0.14 4.42 2.92 -91.23 -0.27 4.15 16 37 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.06 1.81 7.82 -2.38 -0.02 1.79 16 39 H 0.08 1.54 7.56 -2.39 -0.02 1.52 16 40 H 0.10 0.80 7.41 -2.39 -0.02 0.78 16 41 H 0.11 0.87 7.91 -2.39 -0.02 0.85 16 42 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 43 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.09 0.98 7.93 -2.39 -0.02 0.97 16 45 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 46 H 0.22 1.15 8.06 -2.91 -0.02 1.12 16 47 H 0.23 2.88 8.06 -2.91 -0.02 2.85 16 48 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.08 2.05 8.08 -2.39 -0.02 2.03 16 50 H 0.05 1.53 5.12 -2.38 -0.01 1.52 16 51 H 0.06 1.91 7.41 -2.39 -0.02 1.89 16 Total: -1.00 -77.69 392.78 3.22 -74.48 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.67 Total: 10.19 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: 6.20 Total: -18.33 kcal Atomic # 7 Polarization: -95.02 SS G_CDS: -6.45 Total: -101.47 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.76 Total: -12.50 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -77.69 3.22 -74.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040158.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.773 kcal (2) G-P(sol) polarization free energy of solvation -77.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds