Wall clock time and date at job start Sat Apr 11 2020 08:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46843 * 111.00086 * 45.72491 * 11 10 9 13 13 C 1.53065 * 109.50696 * 185.90609 * 12 11 10 14 14 C 1.52988 * 109.27437 * 300.98360 * 13 12 11 15 15 C 1.53201 * 109.52987 * 177.55748 * 14 13 12 16 16 C 1.53085 * 108.47159 * 52.74842 * 15 14 13 17 17 C 1.50167 * 109.90702 * 48.73517 * 16 15 14 18 18 O 1.21282 * 118.22295 * 162.34889 * 17 16 15 19 19 N 1.33351 * 123.55582 * 342.32530 * 17 16 15 20 20 C 1.46497 * 117.96306 * 182.33415 * 19 17 16 21 21 C 1.50696 * 109.47153 * 270.02160 * 20 19 17 22 22 C 1.41378 * 128.00870 * 269.67876 * 21 20 19 23 23 N 1.30178 * 106.39573 * 179.89945 * 22 21 20 24 24 O 1.20918 * 111.60262 * 0.38570 * 23 22 21 25 25 C 1.34038 * 111.57144 * 359.74884 * 24 23 22 26 26 C 1.45785 * 124.07554 * 2.35953 * 19 17 16 27 27 C 1.52991 * 109.38763 * 57.48373 * 14 13 12 28 28 C 1.46846 * 111.00009 * 170.00096 * 11 10 9 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 33 33 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 34 34 H 1.09001 * 109.46265 * 305.91766 * 12 11 10 35 35 H 1.09001 * 109.46431 * 65.89801 * 12 11 10 36 36 H 1.08998 * 109.50145 * 181.04640 * 13 12 11 37 37 H 1.08997 * 109.53852 * 60.94527 * 13 12 11 38 38 H 1.08997 * 109.63937 * 172.42602 * 15 14 13 39 39 H 1.09000 * 109.64120 * 293.04521 * 15 14 13 40 40 H 1.08993 * 109.39642 * 288.60031 * 16 15 14 41 41 H 1.08996 * 109.31849 * 168.82255 * 16 15 14 42 42 H 1.08997 * 109.47109 * 30.02103 * 20 19 17 43 43 H 1.09004 * 109.47314 * 150.02184 * 20 19 17 44 44 H 1.08005 * 126.80289 * 0.02659 * 22 21 20 45 45 H 1.07992 * 126.77783 * 179.97438 * 25 24 23 46 46 H 1.09001 * 109.26646 * 220.75132 * 26 19 17 47 47 H 1.08995 * 109.24016 * 101.26522 * 26 19 17 48 48 H 1.09001 * 109.50353 * 182.57767 * 27 14 13 49 49 H 1.08994 * 109.53734 * 62.47743 * 27 14 13 50 50 H 1.09003 * 109.46094 * 294.09997 * 28 11 10 51 51 H 1.08998 * 109.46578 * 54.07672 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 0.4190 -4.9068 -0.9987 13 6 -0.4121 -6.1862 -0.8749 14 6 0.4890 -7.3990 -1.1147 15 6 -0.3237 -8.6849 -0.9321 16 6 -1.5728 -8.5984 -1.8129 17 6 -1.1902 -8.1782 -3.2029 18 8 -1.9843 -8.3705 -4.0992 19 7 -0.0249 -7.6046 -3.5051 20 6 0.2001 -7.1964 -4.8939 21 6 0.8311 -8.3332 -5.6558 22 6 2.2071 -8.6091 -5.8263 23 7 2.2785 -9.6873 -6.5523 24 8 1.1805 -10.0970 -6.8500 25 6 0.2112 -9.3239 -6.3406 26 6 1.0393 -7.3590 -2.5395 27 6 1.6457 -7.3781 -0.1137 28 6 2.4167 -6.0640 -0.2598 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 2.8718 -3.6005 -0.9002 33 1 2.8717 -3.6084 0.8798 34 1 -0.2164 -4.0412 -0.8113 35 1 0.8361 -4.8405 -2.0036 36 1 -1.2111 -6.1742 -1.6162 37 1 -0.8436 -6.2453 0.1243 38 1 0.2770 -9.5435 -1.2321 39 1 -0.6182 -8.7870 0.1123 40 1 -2.2633 -7.8682 -1.3911 41 1 -2.0561 -9.5746 -1.8499 42 1 -0.7525 -6.9348 -5.3546 43 1 0.8637 -6.3319 -4.9156 44 1 3.0351 -8.0396 -5.4307 45 1 -0.8537 -9.4632 -6.4542 46 1 1.4774 -6.3789 -2.7285 47 1 1.8080 -8.1238 -2.6499 48 1 2.3140 -8.2161 -0.3122 49 1 1.2524 -7.4586 0.8996 50 1 2.8243 -5.9921 -1.2682 51 1 3.2314 -6.0383 0.4639 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040732.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:24:42 Heat of formation + Delta-G solvation = 28.225764 kcal Electronic energy + Delta-G solvation = -31929.742883 eV Core-core repulsion = 27832.120064 eV Total energy + Delta-G solvation = -4097.622819 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.18506 -41.32556 -39.02646 -36.41935 -35.75447 -33.71564 -33.21542 -32.00216 -31.77413 -30.65437 -29.29294 -27.82484 -26.64829 -25.09364 -23.90990 -23.32938 -23.23093 -22.18756 -21.48917 -20.30795 -19.75942 -18.24382 -17.79849 -17.53134 -16.88921 -16.55662 -16.42818 -16.15551 -15.36390 -15.11324 -14.78336 -14.54647 -14.38099 -14.25257 -14.00226 -13.76261 -13.70274 -13.49784 -13.38964 -12.91903 -12.52507 -12.43593 -12.24852 -12.09856 -11.97478 -11.76364 -11.48584 -11.33288 -11.14101 -11.09687 -10.98165 -10.77736 -10.67166 -10.57747 -10.29838 -10.17550 -10.04761 -9.91263 -9.57955 -9.35386 -9.11717 -9.02677 -8.39765 -7.74088 -6.05853 -4.08174 1.22153 1.88416 2.45782 2.91264 3.02558 3.27130 3.35076 3.38526 4.02128 4.23042 4.25533 4.38034 4.42949 4.47988 4.49700 4.55741 4.67487 4.88547 4.98672 5.00354 5.16346 5.20374 5.30062 5.30858 5.32945 5.34886 5.39292 5.43849 5.51741 5.54491 5.63316 5.67981 5.71136 5.73921 5.79575 5.90002 5.99381 6.02289 6.09776 6.21044 6.23406 6.33070 6.45040 6.53413 6.86361 7.22720 7.44010 7.55112 7.72412 7.79272 7.95218 7.97039 7.98602 8.36948 8.98656 9.56033 11.05431 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012824 B = 0.002626 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.868501 B =10658.327278 C =11355.233362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.021 3.979 10 C 0.063 3.937 11 N -0.537 5.537 12 C 0.051 3.949 13 C -0.106 4.106 14 C -0.071 4.071 15 C -0.112 4.112 16 C -0.135 4.135 17 C 0.522 3.478 18 O -0.559 6.559 19 N -0.592 5.592 20 C 0.183 3.817 21 C -0.221 4.221 22 C 0.001 3.999 23 N -0.369 5.369 24 O 0.092 5.908 25 C -0.031 4.031 26 C 0.119 3.881 27 C -0.099 4.099 28 C 0.052 3.948 29 H 0.260 0.740 30 H 0.025 0.975 31 H 0.020 0.980 32 H 0.018 0.982 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.026 0.974 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.189 0.811 45 H 0.218 0.782 46 H 0.083 0.917 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.078 0.922 50 H 0.026 0.974 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.115 -20.711 -6.540 21.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.064 4.064 11 N -0.262 5.262 12 C -0.077 4.077 13 C -0.144 4.144 14 C -0.072 4.072 15 C -0.150 4.150 16 C -0.174 4.174 17 C 0.311 3.689 18 O -0.438 6.438 19 N -0.324 5.324 20 C 0.060 3.940 21 C -0.227 4.227 22 C -0.179 4.179 23 N -0.073 5.073 24 O 0.028 5.972 25 C -0.114 4.114 26 C -0.004 4.004 27 C -0.137 4.137 28 C -0.076 4.076 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.123 0.877 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.112 0.888 44 H 0.206 0.794 45 H 0.235 0.765 46 H 0.101 0.899 47 H 0.081 0.919 48 H 0.082 0.918 49 H 0.097 0.903 50 H 0.044 0.956 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.133 -21.503 -6.996 22.613 hybrid contribution 0.500 1.793 -0.318 1.888 sum 0.633 -19.710 -7.313 21.033 Atomic orbital electron populations 1.69969 1.06014 1.26551 1.50666 1.24990 0.94837 0.99217 0.95247 0.86549 0.80099 0.83805 0.77622 1.19767 1.21032 1.20952 1.21213 0.93022 0.90995 1.50842 0.92741 1.19237 0.94080 0.90537 0.97720 1.22307 0.96979 0.88127 0.98950 1.62021 1.11504 1.03575 1.49130 1.22216 0.94196 0.98265 0.92989 1.21708 0.97179 0.93081 1.02395 1.20827 0.96814 0.95941 0.93607 1.21720 0.95439 0.97202 1.00600 1.21683 0.99784 1.04111 0.91862 1.20191 0.80682 0.76535 0.91452 1.90670 1.49419 1.55509 1.48241 1.47320 1.16263 1.59921 1.08864 1.19647 1.01612 0.92228 0.80552 1.21778 0.93153 1.02181 1.05537 1.25018 0.97676 0.95526 0.99651 1.73889 1.03013 1.13901 1.16501 1.84826 1.10481 1.44969 1.56880 1.26045 0.96894 0.91584 0.96834 1.21667 0.88954 1.01959 0.87782 1.21563 0.95822 0.97012 0.99313 1.22084 0.95245 0.91111 0.99183 0.93007 0.95714 0.96233 0.96356 0.91923 0.88674 0.95611 0.91978 0.90515 0.91443 0.90110 0.87734 0.88441 0.87999 0.88838 0.79414 0.76508 0.89893 0.91942 0.91758 0.90291 0.95561 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.16 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.29 9.11 -34.44 -0.31 -14.61 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.53 4.22 -27.88 -0.12 0.41 16 10 C 0.06 1.24 5.21 -3.83 -0.02 1.22 16 11 N -0.54 -8.61 4.80 -234.64 -1.13 -9.74 16 12 C 0.05 0.78 4.61 -3.82 -0.02 0.76 16 13 C -0.11 -1.24 4.19 -26.70 -0.11 -1.35 16 14 C -0.07 -0.66 0.51 -154.52 -0.08 -0.74 16 15 C -0.11 -0.88 4.95 -26.58 -0.13 -1.01 16 16 C -0.13 -1.18 5.39 -28.10 -0.15 -1.33 16 17 C 0.52 5.82 6.64 -11.88 -0.08 5.74 16 18 O -0.56 -7.71 16.21 5.56 0.09 -7.62 16 19 N -0.59 -5.90 2.66 -176.40 -0.47 -6.36 16 20 C 0.18 1.71 5.78 -5.20 -0.03 1.68 16 21 C -0.22 -2.10 5.89 -104.42 -0.62 -2.71 16 22 C 0.00 0.01 12.16 -17.06 -0.21 -0.20 16 23 N -0.37 -4.25 12.07 30.35 0.37 -3.89 16 24 O 0.09 0.98 11.20 17.18 0.19 1.17 16 25 C -0.03 -0.29 12.26 29.74 0.36 0.08 16 26 C 0.12 1.10 4.45 -4.53 -0.02 1.08 16 27 C -0.10 -0.94 4.87 -26.70 -0.13 -1.07 16 28 C 0.05 0.64 5.18 -3.82 -0.02 0.62 16 29 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.02 0.50 6.20 -51.93 -0.32 0.18 16 32 H 0.02 0.36 8.08 -51.93 -0.42 -0.06 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.10 1.76 5.81 -51.93 -0.30 1.46 16 35 H 0.03 0.39 6.36 -51.93 -0.33 0.06 16 36 H 0.06 0.73 5.93 -51.93 -0.31 0.42 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.90 7.02 -51.93 -0.36 0.54 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.10 1.03 7.21 -51.93 -0.37 0.65 16 43 H 0.09 0.76 7.86 -51.93 -0.41 0.36 16 44 H 0.19 1.39 8.06 -52.48 -0.42 0.97 16 45 H 0.22 1.60 8.06 -52.49 -0.42 1.18 16 46 H 0.08 0.84 4.83 -51.93 -0.25 0.59 16 47 H 0.06 0.54 8.11 -51.93 -0.42 0.11 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.03 0.32 6.77 -51.93 -0.35 -0.04 16 51 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 LS Contribution 391.58 15.07 5.90 5.90 Total: -1.00 -31.67 391.58 -9.15 -40.82 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -8.04 Total: -1.17 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -1.78 Total: -9.89 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: -0.49 Total: -45.37 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: 0.28 Total: -6.45 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.67 -9.15 -40.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040732.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.042 kcal (2) G-P(sol) polarization free energy of solvation -31.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds