Wall clock time and date at job start Sat Apr 11 2020 08:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46843 * 111.00086 * 45.72491 * 11 10 9 13 13 C 1.53065 * 109.50696 * 185.90609 * 12 11 10 14 14 C 1.52988 * 109.27437 * 300.98360 * 13 12 11 15 15 C 1.53201 * 109.52987 * 177.55748 * 14 13 12 16 16 C 1.53085 * 108.47159 * 52.74842 * 15 14 13 17 17 C 1.50167 * 109.90702 * 48.73517 * 16 15 14 18 18 O 1.21282 * 118.22295 * 162.34889 * 17 16 15 19 19 N 1.33351 * 123.55582 * 342.32530 * 17 16 15 20 20 C 1.46497 * 117.96306 * 182.33415 * 19 17 16 21 21 C 1.50696 * 109.47153 * 270.02160 * 20 19 17 22 22 C 1.41378 * 128.00870 * 269.67876 * 21 20 19 23 23 N 1.30178 * 106.39573 * 179.89945 * 22 21 20 24 24 O 1.20918 * 111.60262 * 0.38570 * 23 22 21 25 25 C 1.34038 * 111.57144 * 359.74884 * 24 23 22 26 26 C 1.45785 * 124.07554 * 2.35953 * 19 17 16 27 27 C 1.52991 * 109.38763 * 57.48373 * 14 13 12 28 28 C 1.46846 * 111.00009 * 170.00096 * 11 10 9 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 33 33 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 34 34 H 1.09001 * 109.46265 * 305.91766 * 12 11 10 35 35 H 1.09001 * 109.46431 * 65.89801 * 12 11 10 36 36 H 1.08998 * 109.50145 * 181.04640 * 13 12 11 37 37 H 1.08997 * 109.53852 * 60.94527 * 13 12 11 38 38 H 1.08997 * 109.63937 * 172.42602 * 15 14 13 39 39 H 1.09000 * 109.64120 * 293.04521 * 15 14 13 40 40 H 1.08993 * 109.39642 * 288.60031 * 16 15 14 41 41 H 1.08996 * 109.31849 * 168.82255 * 16 15 14 42 42 H 1.08997 * 109.47109 * 30.02103 * 20 19 17 43 43 H 1.09004 * 109.47314 * 150.02184 * 20 19 17 44 44 H 1.08005 * 126.80289 * 0.02659 * 22 21 20 45 45 H 1.07992 * 126.77783 * 179.97438 * 25 24 23 46 46 H 1.09001 * 109.26646 * 220.75132 * 26 19 17 47 47 H 1.08995 * 109.24016 * 101.26522 * 26 19 17 48 48 H 1.09001 * 109.50353 * 182.57767 * 27 14 13 49 49 H 1.08994 * 109.53734 * 62.47743 * 27 14 13 50 50 H 1.09003 * 109.46094 * 294.09997 * 28 11 10 51 51 H 1.08998 * 109.46578 * 54.07672 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 0.4190 -4.9068 -0.9987 13 6 -0.4121 -6.1862 -0.8749 14 6 0.4890 -7.3990 -1.1147 15 6 -0.3237 -8.6849 -0.9321 16 6 -1.5728 -8.5984 -1.8129 17 6 -1.1902 -8.1782 -3.2029 18 8 -1.9843 -8.3705 -4.0992 19 7 -0.0249 -7.6046 -3.5051 20 6 0.2001 -7.1964 -4.8939 21 6 0.8311 -8.3332 -5.6558 22 6 2.2071 -8.6091 -5.8263 23 7 2.2785 -9.6873 -6.5523 24 8 1.1805 -10.0970 -6.8500 25 6 0.2112 -9.3239 -6.3406 26 6 1.0393 -7.3590 -2.5395 27 6 1.6457 -7.3781 -0.1137 28 6 2.4167 -6.0640 -0.2598 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 2.8718 -3.6005 -0.9002 33 1 2.8717 -3.6084 0.8798 34 1 -0.2164 -4.0412 -0.8113 35 1 0.8361 -4.8405 -2.0036 36 1 -1.2111 -6.1742 -1.6162 37 1 -0.8436 -6.2453 0.1243 38 1 0.2770 -9.5435 -1.2321 39 1 -0.6182 -8.7870 0.1123 40 1 -2.2633 -7.8682 -1.3911 41 1 -2.0561 -9.5746 -1.8499 42 1 -0.7525 -6.9348 -5.3546 43 1 0.8637 -6.3319 -4.9156 44 1 3.0351 -8.0396 -5.4307 45 1 -0.8537 -9.4632 -6.4542 46 1 1.4774 -6.3789 -2.7285 47 1 1.8080 -8.1238 -2.6499 48 1 2.3140 -8.2161 -0.3122 49 1 1.2524 -7.4586 0.8996 50 1 2.8243 -5.9921 -1.2682 51 1 3.2314 -6.0383 0.4639 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040732.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:24:39 Heat of formation + Delta-G solvation = 8.939711 kcal Electronic energy + Delta-G solvation = -31930.579189 eV Core-core repulsion = 27832.120064 eV Total energy + Delta-G solvation = -4098.459125 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -45.95117 -42.16597 -40.04692 -37.53602 -36.61520 -35.20243 -34.36996 -33.13008 -32.65853 -31.70957 -30.82150 -28.63875 -27.75207 -26.26587 -25.23707 -24.51780 -23.99595 -23.10128 -22.40331 -21.57919 -20.91064 -18.99987 -18.65132 -18.56650 -18.36784 -17.58798 -17.31551 -16.99431 -16.56108 -16.47650 -15.94823 -15.84061 -15.42588 -15.26532 -15.09267 -14.66371 -14.61355 -14.43790 -14.28455 -14.19090 -13.91005 -13.40813 -13.33125 -13.19465 -12.95291 -12.92788 -12.85371 -12.61763 -12.38101 -12.24366 -12.12860 -12.05900 -11.94999 -11.55992 -11.52543 -11.43712 -11.25881 -11.03270 -10.87190 -10.83915 -10.52771 -10.37156 -9.84319 -9.04573 -8.20399 -6.30929 0.47795 1.14258 1.39542 1.40425 1.52991 1.62319 2.15429 2.30244 2.39974 3.12752 3.13713 3.31093 3.49945 3.58624 3.66840 3.73341 3.79296 3.95756 4.13369 4.16655 4.20691 4.30136 4.33824 4.46005 4.49516 4.52407 4.56913 4.62151 4.63951 4.72457 4.73866 4.75227 4.78943 4.88630 4.95688 5.01062 5.03548 5.04894 5.09780 5.10537 5.24922 5.30121 5.32715 5.33198 5.46118 5.50183 5.69817 5.80613 6.12362 6.36782 6.43419 6.43938 6.86665 7.12583 7.22024 7.38268 8.91420 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012824 B = 0.002626 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.868501 B =10658.327278 C =11355.233362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.032 3.968 10 C 0.079 3.921 11 N -0.544 5.544 12 C 0.056 3.944 13 C -0.095 4.095 14 C -0.065 4.065 15 C -0.102 4.102 16 C -0.133 4.133 17 C 0.515 3.485 18 O -0.592 6.592 19 N -0.590 5.590 20 C 0.183 3.817 21 C -0.226 4.226 22 C 0.006 3.994 23 N -0.395 5.395 24 O 0.081 5.919 25 C -0.027 4.027 26 C 0.121 3.879 27 C -0.090 4.090 28 C 0.049 3.951 29 H 0.263 0.737 30 H -0.009 1.009 31 H 0.000 1.000 32 H 0.019 0.981 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.025 0.975 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.105 0.895 44 H 0.210 0.790 45 H 0.232 0.768 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.095 0.905 49 H 0.079 0.921 50 H 0.034 0.966 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.425 -22.054 -6.162 22.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.006 4.006 10 C -0.049 4.049 11 N -0.269 5.269 12 C -0.071 4.071 13 C -0.133 4.133 14 C -0.066 4.066 15 C -0.140 4.140 16 C -0.173 4.173 17 C 0.305 3.695 18 O -0.473 6.473 19 N -0.321 5.321 20 C 0.060 3.940 21 C -0.231 4.231 22 C -0.173 4.173 23 N -0.102 5.102 24 O 0.020 5.980 25 C -0.109 4.109 26 C -0.001 4.001 27 C -0.128 4.128 28 C -0.079 4.079 29 H 0.072 0.928 30 H 0.009 0.991 31 H 0.018 0.982 32 H 0.037 0.963 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.043 0.957 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.109 0.891 43 H 0.123 0.877 44 H 0.227 0.773 45 H 0.248 0.752 46 H 0.092 0.908 47 H 0.099 0.901 48 H 0.113 0.887 49 H 0.098 0.902 50 H 0.052 0.948 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.688 -22.869 -6.615 23.866 hybrid contribution -0.021 2.237 -0.445 2.281 sum 1.668 -20.632 -7.060 21.870 Atomic orbital electron populations 1.70103 1.07723 1.27620 1.51611 1.25919 0.95712 1.03178 0.94762 0.85440 0.79158 0.78979 0.77720 1.18545 1.20493 1.20475 1.21670 0.93493 0.92375 1.50551 0.92296 1.19043 0.94282 0.92157 0.95091 1.21942 0.95612 0.88428 0.98887 1.61975 1.12086 1.03097 1.49768 1.22080 0.93799 0.98574 0.92689 1.21591 0.97008 0.92467 1.02238 1.20772 0.96566 0.95487 0.93770 1.21673 0.94675 0.96364 1.01239 1.21713 1.00414 1.04636 0.90518 1.20665 0.80532 0.76184 0.92116 1.90654 1.50354 1.56964 1.49357 1.47376 1.16214 1.59271 1.09196 1.19653 1.01365 0.92647 0.80373 1.21785 0.93215 1.02247 1.05857 1.25379 0.98329 0.94933 0.98674 1.73887 1.03522 1.15021 1.17777 1.84806 1.10578 1.45336 1.57241 1.26357 0.97295 0.91177 0.96099 1.21696 0.88973 1.02068 0.87409 1.21535 0.95862 0.96114 0.99304 1.22238 0.95111 0.90750 0.99793 0.92837 0.99069 0.98224 0.96277 0.91984 0.93109 0.95693 0.92137 0.90762 0.89999 0.88653 0.87813 0.87277 0.89057 0.87725 0.77350 0.75204 0.90818 0.90093 0.88690 0.90212 0.94770 0.90494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.92 13.29 21.45 0.28 -55.64 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.96 43.65 29.54 68.60 2.03 45.67 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.54 -30.28 9.11 25.60 0.23 -30.05 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.03 1.62 4.22 29.85 0.13 1.74 16 10 C 0.08 3.13 5.21 86.30 0.45 3.58 16 11 N -0.54 -17.30 4.80 -896.27 -4.30 -21.60 16 12 C 0.06 1.76 4.61 86.34 0.40 2.16 16 13 C -0.10 -2.16 4.19 30.61 0.13 -2.03 16 14 C -0.07 -1.04 0.51 -52.19 -0.03 -1.07 16 15 C -0.10 -1.24 4.95 30.69 0.15 -1.09 16 16 C -0.13 -2.05 5.39 29.71 0.16 -1.89 16 17 C 0.51 10.78 6.64 87.71 0.58 11.36 16 18 O -0.59 -15.97 16.21 -3.04 -0.05 -16.02 16 19 N -0.59 -10.80 2.66 -831.19 -2.21 -13.01 16 20 C 0.18 3.24 5.78 85.63 0.49 3.74 16 21 C -0.23 -3.98 5.89 -19.74 -0.12 -4.10 16 22 C 0.01 0.11 12.16 85.71 1.04 1.15 16 23 N -0.40 -8.68 12.07 -59.27 -0.72 -9.39 16 24 O 0.08 1.67 11.20 71.66 0.80 2.48 16 25 C -0.03 -0.47 12.26 67.18 0.82 0.35 16 26 C 0.12 1.92 4.45 86.44 0.38 2.30 16 27 C -0.09 -1.40 4.87 30.61 0.15 -1.25 16 28 C 0.05 1.09 5.18 86.33 0.45 1.53 16 29 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 30 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 31 H 0.00 -0.03 6.20 -2.39 -0.01 -0.04 16 32 H 0.02 0.75 8.08 -2.38 -0.02 0.73 16 33 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.05 2.02 5.81 -2.39 -0.01 2.01 16 35 H 0.02 0.77 6.36 -2.39 -0.02 0.76 16 36 H 0.06 1.40 5.93 -2.39 -0.01 1.38 16 37 H 0.07 1.73 8.14 -2.39 -0.02 1.72 16 38 H 0.08 0.84 8.13 -2.39 -0.02 0.82 16 39 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.10 1.63 7.02 -2.39 -0.02 1.61 16 41 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.09 1.83 7.21 -2.39 -0.02 1.81 16 43 H 0.10 1.59 7.86 -2.38 -0.02 1.57 16 44 H 0.21 2.58 8.06 -2.91 -0.02 2.55 16 45 H 0.23 3.23 8.06 -2.91 -0.02 3.21 16 46 H 0.07 1.35 4.83 -2.39 -0.01 1.34 16 47 H 0.08 1.06 8.11 -2.39 -0.02 1.04 16 48 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.03 0.73 6.77 -2.39 -0.02 0.71 16 51 H 0.08 1.67 8.12 -2.39 -0.02 1.65 16 Total: -1.00 -70.43 391.58 2.66 -67.78 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.93 Total: 12.69 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 5.89 Total: -12.96 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -6.94 Total: -99.64 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.75 Total: -13.54 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -70.43 2.66 -67.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040732.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.715 kcal (2) G-P(sol) polarization free energy of solvation -70.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds