Wall clock time and date at job start Sat Apr 11 2020 08:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00035 * 2 1 4 4 H 1.48504 * 109.47234 * 269.99430 * 3 2 1 5 5 H 1.48499 * 109.47410 * 29.99121 * 3 2 1 6 6 H 1.48495 * 109.47632 * 149.99441 * 3 2 1 7 7 C 1.38809 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00134 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00039 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00112 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.46846 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.47490 * 55.00287 * 11 10 9 13 13 C 1.52995 * 109.47621 * 294.99742 * 11 10 9 14 14 C 1.52998 * 109.47515 * 180.02562 * 13 11 10 15 15 C 1.52990 * 109.47147 * 59.99774 * 14 13 11 16 16 C 1.53001 * 109.47370 * 300.00314 * 15 14 13 17 17 C 1.52998 * 109.47066 * 60.00094 * 16 15 14 18 18 H 1.08994 * 109.47405 * 60.00254 * 17 16 15 19 19 N 1.46504 * 109.46959 * 180.02562 * 17 16 15 20 20 C 1.34776 * 119.99775 * 274.99778 * 19 17 16 21 21 O 1.21280 * 120.00211 * 0.02562 * 20 19 17 22 22 C 1.50704 * 119.99828 * 179.97438 * 20 19 17 23 23 C 1.50697 * 109.46804 * 180.02562 * 22 20 19 24 24 C 1.35451 * 126.77492 * 90.00420 * 23 22 20 25 25 C 1.41386 * 103.98595 * 180.02562 * 24 23 22 26 26 C 1.50697 * 126.80418 * 179.97438 * 25 24 23 27 27 C 1.53002 * 117.49992 * 16.25530 * 26 25 24 28 28 C 1.53000 * 117.50034 * 84.91303 * 26 25 24 29 29 N 1.30174 * 106.39280 * 0.26086 * 25 24 23 30 30 O 1.20927 * 111.60634 * 359.53738 * 29 25 24 31 31 H 0.96995 * 119.99818 * 0.02562 * 1 2 3 32 32 H 0.96994 * 119.99648 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.46880 * 59.99395 * 10 9 7 34 34 H 1.08997 * 109.46580 * 299.99866 * 10 9 7 35 35 H 1.09005 * 109.47133 * 300.00763 * 13 11 10 36 36 H 1.09000 * 109.46946 * 59.99577 * 13 11 10 37 37 H 1.09005 * 109.47011 * 180.02562 * 14 13 11 38 38 H 1.09004 * 109.46872 * 299.99774 * 14 13 11 39 39 H 1.09004 * 109.47235 * 60.00222 * 15 14 13 40 40 H 1.09004 * 109.47201 * 180.02562 * 15 14 13 41 41 H 1.09004 * 109.46866 * 300.00134 * 16 15 14 42 42 H 1.09005 * 109.46886 * 180.02562 * 16 15 14 43 43 H 0.96998 * 120.00262 * 94.99553 * 19 17 16 44 44 H 1.08997 * 109.47186 * 59.99898 * 22 20 19 45 45 H 1.08997 * 109.47118 * 300.00010 * 22 20 19 46 46 H 1.07998 * 128.01427 * 0.05351 * 24 23 22 47 47 H 1.09002 * 115.54932 * 230.58368 * 26 25 24 48 48 H 1.09000 * 117.49996 * 215.00670 * 27 26 25 49 49 H 1.08999 * 117.49664 * 0.02562 * 27 26 25 50 50 H 1.09008 * 117.49673 * 359.97438 * 28 26 25 51 51 H 1.08999 * 117.49942 * 144.97208 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6998 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.3794 -4.7130 -0.8404 13 6 0.2696 -4.8110 1.3088 14 6 -0.7242 -5.9742 1.3097 15 6 0.0370 -7.2954 1.1841 16 6 0.8312 -7.3042 -0.1235 17 6 1.8251 -6.1409 -0.1243 18 1 2.5096 -6.2473 0.7172 19 7 2.5852 -6.1490 -1.3767 20 6 3.6850 -6.9194 -1.4925 21 8 4.0451 -7.6064 -0.5602 22 6 4.4666 -6.9282 -2.7810 23 6 5.6400 -7.8646 -2.6503 24 6 5.6595 -9.1864 -2.9457 25 6 6.9832 -9.5837 -2.6474 26 6 7.5648 -10.9665 -2.7911 27 6 6.7948 -11.9710 -3.6507 28 6 8.1035 -11.3670 -4.1659 29 7 7.5983 -8.5197 -2.2183 30 8 6.8703 -7.5541 -2.2182 31 1 -0.4849 0.8400 -0.0004 32 1 0.3556 -2.3881 0.0005 33 1 2.6848 -3.7145 0.8905 34 1 2.6847 -3.7145 -0.8895 35 1 0.9541 -4.9176 2.1504 36 1 -0.2723 -3.8695 1.3984 37 1 -1.2904 -5.9677 2.2411 38 1 -1.4088 -5.8679 0.4681 39 1 0.7215 -7.4017 2.0257 40 1 -0.6711 -8.1241 1.1843 41 1 0.1467 -7.1978 -0.9651 42 1 1.3732 -8.2457 -0.2131 43 1 2.2970 -5.5999 -2.1226 44 1 4.8265 -5.9217 -2.9945 45 1 3.8230 -7.2640 -3.5941 46 1 4.8513 -9.7957 -3.3223 47 1 8.0870 -11.3502 -1.9146 48 1 6.8103 -13.0156 -3.3398 49 1 5.8678 -11.6315 -4.1127 50 1 8.0369 -10.6304 -4.9667 51 1 8.9804 -12.0139 -4.1940 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275769615.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:24:59 Heat of formation + Delta-G solvation = 40.291721 kcal Electronic energy + Delta-G solvation = -30334.843753 eV Core-core repulsion = 26237.744153 eV Total energy + Delta-G solvation = -4097.099600 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.06548 -40.19148 -38.29577 -37.89709 -34.64627 -34.19162 -33.88076 -33.08235 -31.91519 -29.98545 -29.57241 -28.07793 -25.22374 -24.88131 -23.30078 -23.04965 -22.51859 -22.18516 -20.71964 -20.61226 -20.09540 -19.56921 -17.96208 -17.53835 -17.17984 -16.73455 -16.27583 -15.96301 -15.50731 -14.89321 -14.85837 -14.51682 -14.29254 -14.26075 -13.83055 -13.68992 -13.65264 -13.22300 -13.06716 -12.70923 -12.65373 -12.38503 -12.25392 -11.97991 -11.86081 -11.74107 -11.55736 -11.36883 -11.12698 -10.90650 -10.89171 -10.77093 -10.74130 -10.45331 -10.25650 -10.14581 -10.03137 -9.97855 -9.90455 -9.66607 -9.44869 -8.98159 -8.85942 -6.93265 -5.78470 -3.06731 1.26596 1.99211 2.52252 2.78709 3.25025 3.31262 3.42432 3.48382 3.49766 3.78018 4.17291 4.41601 4.49690 4.55101 4.64430 4.72449 4.78832 4.80979 4.89688 4.95492 4.99115 5.04557 5.18159 5.22911 5.26378 5.33814 5.43430 5.45442 5.54524 5.57575 5.60784 5.64861 5.65244 5.67820 5.71735 5.81995 5.86734 6.08250 6.11321 6.18211 6.22334 6.26593 6.37039 6.49854 6.54515 6.66836 6.75982 6.88774 7.45614 7.69210 8.12377 8.14510 8.40724 9.52125 10.09595 10.44314 11.44300 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011684 B = 0.002298 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.856674 B =12181.695014 C =14184.509463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.158 3.842 11 C -0.100 4.100 12 H 0.075 0.925 13 C -0.107 4.107 14 C -0.121 4.121 15 C -0.115 4.115 16 C -0.125 4.125 17 C 0.154 3.846 18 H 0.088 0.912 19 N -0.716 5.716 20 C 0.516 3.484 21 O -0.533 6.533 22 C -0.066 4.066 23 C -0.003 4.003 24 C -0.216 4.216 25 C 0.046 3.954 26 C -0.085 4.085 27 C -0.163 4.163 28 C -0.164 4.164 29 N -0.358 5.358 30 O 0.109 5.891 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.018 0.982 34 H 0.019 0.981 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.404 0.596 44 H 0.123 0.877 45 H 0.127 0.873 46 H 0.169 0.831 47 H 0.122 0.878 48 H 0.104 0.896 49 H 0.099 0.901 50 H 0.097 0.903 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.763 -23.676 -8.527 25.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.031 3.969 11 C -0.119 4.119 12 H 0.094 0.906 13 C -0.145 4.145 14 C -0.159 4.159 15 C -0.153 4.153 16 C -0.164 4.164 17 C 0.050 3.950 18 H 0.106 0.894 19 N -0.367 5.367 20 C 0.301 3.699 21 O -0.410 6.410 22 C -0.107 4.107 23 C -0.067 4.067 24 C -0.238 4.238 25 C -0.112 4.112 26 C -0.104 4.104 27 C -0.200 4.200 28 C -0.202 4.202 29 N -0.060 5.060 30 O 0.041 5.959 31 H 0.064 0.936 32 H 0.218 0.782 33 H 0.036 0.964 34 H 0.037 0.963 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.239 0.761 44 H 0.141 0.859 45 H 0.145 0.855 46 H 0.186 0.814 47 H 0.140 0.860 48 H 0.122 0.878 49 H 0.118 0.882 50 H 0.115 0.885 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.420 -23.788 -7.396 25.993 hybrid contribution -0.716 0.952 -0.606 1.337 sum 6.704 -22.836 -8.003 25.109 Atomic orbital electron populations 1.69651 1.05063 1.25620 1.57891 1.24723 0.95524 0.97653 1.03091 0.86204 0.78704 0.83886 0.77498 1.21753 1.21797 1.20782 1.19218 0.91011 0.84183 1.42510 0.91291 1.42363 1.05802 0.99879 1.89467 1.20669 0.93014 0.85335 0.97924 1.21595 0.97710 0.93331 0.99245 0.90638 1.21497 0.97676 0.98860 0.96515 1.21597 0.98074 0.94515 1.01707 1.21486 0.98760 0.97681 0.97390 1.21887 0.97809 0.98377 0.98322 1.21033 0.92659 0.94929 0.86380 0.89398 1.46033 1.27368 1.45816 1.17464 1.20156 0.80787 0.79985 0.88961 1.90753 1.68294 1.41616 1.40317 1.20166 0.91532 1.00677 0.98289 1.23537 0.87961 0.95358 0.99826 1.22218 0.98055 0.94296 1.09203 1.22548 0.91998 0.95168 1.01500 1.20085 1.04684 0.89078 0.96566 1.23034 0.96280 0.98198 1.02516 1.23031 0.97950 1.03315 0.95868 1.73809 1.17750 0.95276 1.19148 1.84845 1.17621 1.31097 1.62353 0.93552 0.78227 0.96408 0.96328 0.92046 0.90185 0.92089 0.92013 0.91913 0.92175 0.91868 0.91881 0.76105 0.85917 0.85488 0.81375 0.86005 0.87808 0.88217 0.88500 0.87932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -17.65 5.33 -59.91 -0.32 -17.97 16 10 C 0.16 3.01 5.56 -4.04 -0.02 2.99 16 11 C -0.10 -1.46 1.80 -90.62 -0.16 -1.62 16 12 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 13 C -0.11 -1.58 5.08 -26.73 -0.14 -1.72 16 14 C -0.12 -1.45 5.92 -26.74 -0.16 -1.60 16 15 C -0.12 -1.26 5.92 -26.74 -0.16 -1.42 16 16 C -0.13 -1.42 5.49 -26.73 -0.15 -1.56 16 17 C 0.15 1.99 1.90 -67.93 -0.13 1.86 16 18 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 19 N -0.72 -7.95 4.30 -53.80 -0.23 -8.18 16 20 C 0.52 6.15 7.79 -10.98 -0.09 6.06 16 21 O -0.53 -8.64 15.70 5.56 0.09 -8.55 16 22 C -0.07 -0.54 6.27 -29.03 -0.18 -0.73 16 23 C 0.00 -0.03 5.98 -35.30 -0.21 -0.24 16 24 C -0.22 -2.24 10.40 -39.38 -0.41 -2.65 16 25 C 0.05 0.54 6.95 -82.10 -0.57 -0.03 16 26 C -0.09 -0.76 6.33 -91.77 -0.58 -1.34 16 27 C -0.16 -1.02 10.05 -26.69 -0.27 -1.28 16 28 C -0.16 -1.11 10.24 -26.70 -0.27 -1.38 16 29 N -0.36 -5.05 12.07 33.43 0.40 -4.65 16 30 O 0.11 1.49 11.20 17.18 0.19 1.68 16 31 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.38 9.69 6.85 -40.82 -0.28 9.41 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.02 0.35 7.30 -51.93 -0.38 -0.03 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 1.38 7.18 -51.93 -0.37 1.01 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.40 3.69 8.39 -40.82 -0.34 3.35 16 44 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.13 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.17 1.28 7.62 -52.49 -0.40 0.88 16 47 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.10 0.57 7.34 -51.93 -0.38 0.19 16 50 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 51 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 414.25 15.07 6.24 6.24 Total: -1.00 -34.20 414.25 -10.10 -44.30 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -8.44 Total: 8.66 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -3.74 Total: -11.84 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 0.58 Total: -57.68 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: 0.28 Total: -6.87 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.20 -10.10 -44.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275769615.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.590 kcal (2) G-P(sol) polarization free energy of solvation -34.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds