Wall clock time and date at job start Sat Apr 11 2020 08:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99647 * 2 1 4 4 H 1.48501 * 109.47227 * 269.99359 * 3 2 1 5 5 H 1.48488 * 109.47496 * 30.00138 * 3 2 1 6 6 H 1.48501 * 109.46779 * 149.99809 * 3 2 1 7 7 C 1.38809 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99753 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00214 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00234 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47197 * 174.85456 * 10 9 7 12 12 N 1.46499 * 109.46803 * 58.45331 * 11 10 9 13 13 C 1.34780 * 120.00160 * 57.02248 * 12 11 10 14 14 O 1.21605 * 119.99953 * 4.60462 * 13 12 11 15 15 C 1.47418 * 119.99815 * 184.60296 * 13 12 11 16 16 C 1.36088 * 126.44680 * 179.68941 * 15 13 12 17 17 O 1.34261 * 106.95289 * 179.84103 * 16 15 13 18 18 C 1.34053 * 108.22035 * 0.42022 * 17 16 15 19 19 C 1.50703 * 125.37514 * 179.76678 * 18 17 16 20 20 C 1.53001 * 109.47182 * 269.96019 * 19 18 17 21 21 C 1.53002 * 117.49740 * 243.74640 * 20 19 18 22 22 C 1.53000 * 117.49588 * 175.08683 * 20 19 18 23 23 N 1.29930 * 109.24683 * 359.73552 * 18 17 16 24 24 C 1.52998 * 109.46908 * 178.45236 * 11 10 9 25 25 C 1.52998 * 109.47158 * 180.02562 * 24 11 10 26 26 C 1.53004 * 109.47190 * 300.00173 * 25 24 11 27 27 C 1.53000 * 109.46974 * 59.99222 * 26 25 24 28 28 C 1.52998 * 109.47797 * 300.00406 * 27 26 25 29 29 H 0.97003 * 119.99658 * 0.02562 * 1 2 3 30 30 H 0.97003 * 119.99918 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.47209 * 54.85433 * 10 9 7 32 32 H 1.08999 * 109.46835 * 294.85465 * 10 9 7 33 33 H 0.96997 * 119.99971 * 237.29345 * 12 11 10 34 34 H 1.08001 * 126.52520 * 0.02562 * 16 15 13 35 35 H 1.09001 * 109.47418 * 29.96501 * 19 18 17 36 36 H 1.09009 * 109.47076 * 149.96008 * 19 18 17 37 37 H 1.08993 * 115.54772 * 29.41801 * 20 19 18 38 38 H 1.08995 * 117.50214 * 0.02562 * 21 20 19 39 39 H 1.09005 * 117.49617 * 145.02198 * 21 20 19 40 40 H 1.09004 * 117.49692 * 214.97338 * 22 20 19 41 41 H 1.09000 * 117.50077 * 359.97438 * 22 20 19 42 42 H 1.09003 * 109.47273 * 300.00000 * 24 11 10 43 43 H 1.08996 * 109.47376 * 59.99808 * 24 11 10 44 44 H 1.08999 * 109.47756 * 179.97438 * 25 24 11 45 45 H 1.09006 * 109.47331 * 59.99597 * 25 24 11 46 46 H 1.09006 * 109.46514 * 299.99925 * 26 25 24 47 47 H 1.08995 * 109.47339 * 180.02562 * 26 25 24 48 48 H 1.09003 * 109.46561 * 180.02562 * 27 26 25 49 49 H 1.09006 * 109.46926 * 60.00956 * 27 26 25 50 50 H 1.08996 * 109.47309 * 300.00345 * 28 27 26 51 51 H 1.08993 * 109.47231 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0688 -4.8168 0.1299 12 7 0.1133 -4.7697 -0.9796 13 6 0.5564 -4.7957 -2.2522 14 8 1.7418 -4.9425 -2.4804 15 6 -0.3960 -4.6461 -3.3674 16 6 -0.0937 -4.6467 -4.6943 17 8 -1.2493 -4.4880 -5.3592 18 6 -2.2387 -4.3828 -4.4608 19 6 -3.6969 -4.1882 -4.7877 20 6 -4.0074 -2.6920 -4.8632 21 6 -4.9895 -2.1217 -3.8378 22 6 -5.4161 -2.2840 -5.2990 23 7 -1.7420 -4.4757 -3.2638 24 6 1.8304 -6.1432 0.0911 25 6 0.8412 -7.3032 0.2198 26 6 0.0879 -7.1863 1.5464 27 6 -0.6736 -5.8598 1.5852 28 6 0.3156 -4.6998 1.4565 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.7521 -3.6757 0.8408 32 1 2.6138 -3.7554 -0.9319 33 1 -0.8381 -4.7158 -0.7983 34 1 0.8885 -4.7571 -5.1298 35 1 -3.9195 -4.6544 -5.7475 36 1 -4.3079 -4.6474 -4.0105 37 1 -3.1798 -2.0553 -5.1756 38 1 -5.4140 -2.8124 -3.1093 39 1 -4.8081 -1.1096 -3.4760 40 1 -5.5153 -1.3785 -5.8977 41 1 -6.1216 -3.0815 -5.5323 42 1 2.3668 -6.2267 -0.8542 43 1 2.5414 -6.1782 0.9165 44 1 1.3837 -8.2482 0.1918 45 1 0.1305 -7.2680 -0.6059 46 1 0.7986 -7.2215 2.3721 47 1 -0.6165 -8.0129 1.6383 48 1 -1.2099 -5.7764 2.5305 49 1 -1.3844 -5.8246 0.7595 50 1 1.0263 -4.7350 2.2821 51 1 -0.2270 -3.7549 1.4837 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276231454.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:25:10 Heat of formation + Delta-G solvation = -13.988225 kcal Electronic energy + Delta-G solvation = -31957.129599 eV Core-core repulsion = 27857.676244 eV Total energy + Delta-G solvation = -4099.453355 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.45765 -41.57364 -38.95012 -38.47702 -36.41255 -35.93372 -34.63352 -33.19826 -32.68868 -31.73749 -30.79595 -28.89644 -27.05739 -25.45508 -24.70962 -23.50218 -23.22694 -22.99818 -22.19688 -21.64691 -21.24312 -20.06100 -19.30222 -19.22728 -17.83475 -17.63409 -16.94417 -16.71818 -16.58605 -16.19153 -15.87301 -15.73302 -15.22539 -15.14609 -14.93729 -14.81997 -14.78274 -14.56271 -14.46257 -13.78084 -13.74419 -13.46381 -13.19810 -13.05691 -12.87332 -12.78994 -12.73416 -12.64354 -12.33081 -12.23520 -12.12460 -12.02063 -11.88502 -11.86160 -11.50597 -11.33897 -11.28479 -11.15038 -11.02344 -10.90124 -10.61291 -10.11610 -9.84783 -8.95899 -7.95701 -5.22827 0.08185 0.97663 1.41726 1.43702 1.52268 1.54748 2.07836 2.38323 2.53387 2.80191 2.92911 3.36581 3.59605 3.73358 3.78336 3.79714 3.84685 3.87862 4.00167 4.09131 4.11144 4.23704 4.26907 4.44152 4.46123 4.48326 4.58803 4.60470 4.61632 4.68550 4.75543 4.77788 4.84673 4.85203 4.85898 5.03270 5.09583 5.11808 5.14485 5.18379 5.24182 5.25454 5.29458 5.30342 5.36654 5.43878 5.48184 5.51927 5.69326 6.25458 6.37384 6.65767 7.20761 7.32624 8.08188 8.35077 9.27111 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006458 B = 0.004565 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4334.915501 B = 6132.227723 C = 8667.703616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.071 4.071 3 Si 0.970 3.030 4 H -0.292 1.292 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.244 4.244 8 H 0.067 0.933 9 N -0.731 5.731 10 C 0.139 3.861 11 C 0.182 3.818 12 N -0.684 5.684 13 C 0.602 3.398 14 O -0.560 6.560 15 C -0.097 4.097 16 C 0.016 3.984 17 O -0.194 6.194 18 C 0.202 3.798 19 C 0.016 3.984 20 C -0.171 4.171 21 C -0.189 4.189 22 C -0.146 4.146 23 N -0.475 5.475 24 C -0.122 4.122 25 C -0.107 4.107 26 C -0.111 4.111 27 C -0.114 4.114 28 C -0.112 4.112 29 H 0.250 0.750 30 H 0.375 0.625 31 H 0.027 0.973 32 H 0.019 0.981 33 H 0.406 0.594 34 H 0.251 0.749 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.123 0.877 42 H 0.062 0.938 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.048 0.952 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.057 0.943 50 H 0.081 0.919 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.540 -16.207 -7.545 20.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.263 4.263 3 Si 0.799 3.201 4 H -0.219 1.219 5 H -0.217 1.217 6 H -0.195 1.195 7 C -0.376 4.376 8 H 0.085 0.915 9 N -0.374 5.374 10 C 0.012 3.988 11 C 0.096 3.904 12 N -0.333 5.333 13 C 0.389 3.611 14 O -0.440 6.440 15 C -0.216 4.216 16 C -0.058 4.058 17 O -0.080 6.080 18 C -0.008 4.008 19 C -0.022 4.022 20 C -0.190 4.190 21 C -0.226 4.226 22 C -0.182 4.182 23 N -0.205 5.205 24 C -0.160 4.160 25 C -0.144 4.144 26 C -0.148 4.148 27 C -0.151 4.151 28 C -0.150 4.150 29 H 0.058 0.942 30 H 0.208 0.792 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.242 0.758 34 H 0.267 0.733 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.102 0.898 38 H 0.125 0.875 39 H 0.097 0.903 40 H 0.119 0.881 41 H 0.141 0.859 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.096 0.904 48 H 0.097 0.903 49 H 0.075 0.925 50 H 0.100 0.900 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.894 -16.176 -7.099 20.247 hybrid contribution 0.606 1.687 -0.477 1.855 sum -9.288 -14.489 -7.576 18.804 Atomic orbital electron populations 1.69821 1.06337 1.25782 1.59515 1.25466 0.96394 1.00660 1.03801 0.85197 0.77869 0.79843 0.77220 1.21931 1.21700 1.19525 1.19574 0.91206 0.85631 1.41187 0.91542 1.42348 1.05413 1.00488 1.89150 1.21188 0.94184 0.85393 0.98055 1.20564 0.89000 0.94713 0.86104 1.45691 1.10697 1.72547 1.04389 1.16891 0.86043 0.75803 0.82398 1.90707 1.16613 1.51799 1.84890 1.21911 0.91556 1.13008 0.95105 1.25654 0.90430 0.99077 0.90636 1.84392 1.15697 1.68456 1.39443 1.26945 0.94137 0.98587 0.81125 1.19934 0.80429 0.95588 1.06210 1.22095 0.94816 0.94991 1.07135 1.23139 1.03428 1.02347 0.93675 1.23117 0.94867 1.04014 0.96230 1.70722 1.06927 1.17784 1.25059 1.21844 0.98414 0.92928 1.02848 1.21417 0.97676 0.97350 0.98007 1.21518 0.99323 0.96817 0.97170 1.21534 0.97269 0.94014 1.02313 1.21681 0.99095 0.99115 0.95074 0.94152 0.79201 0.95474 0.96296 0.75782 0.73273 0.85198 0.85984 0.89840 0.87509 0.90300 0.88118 0.85859 0.91917 0.90240 0.90671 0.93346 0.91052 0.90362 0.90334 0.92462 0.90042 0.93243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.77 13.06 21.65 0.28 -60.48 16 2 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 3 Si 0.97 48.38 29.55 68.60 2.03 50.41 16 4 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 5 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.24 -14.56 9.99 84.03 0.84 -13.72 16 8 H 0.07 3.90 7.83 -2.91 -0.02 3.87 16 9 N -0.73 -39.67 5.12 -343.46 -1.76 -41.43 16 10 C 0.14 6.33 4.89 86.38 0.42 6.76 16 11 C 0.18 6.42 0.32 3.60 0.00 6.42 16 12 N -0.68 -24.65 3.61 -426.15 -1.54 -26.19 16 13 C 0.60 23.40 7.22 86.66 0.63 24.02 16 14 O -0.56 -23.91 13.13 -4.05 -0.05 -23.96 16 15 C -0.10 -3.36 6.99 40.41 0.28 -3.08 16 16 C 0.02 0.46 11.94 67.32 0.80 1.26 16 17 O -0.19 -5.05 10.73 0.32 0.00 -5.05 16 18 C 0.20 5.26 7.51 88.39 0.66 5.92 16 19 C 0.02 0.26 6.12 29.85 0.18 0.45 16 20 C -0.17 -3.33 5.72 -10.79 -0.06 -3.39 16 21 C -0.19 -3.72 10.18 30.62 0.31 -3.41 16 22 C -0.15 -2.01 10.25 30.62 0.31 -1.70 16 23 N -0.48 -15.39 11.06 -293.04 -3.24 -18.63 16 24 C -0.12 -3.64 4.56 30.59 0.14 -3.50 16 25 C -0.11 -2.53 5.77 30.59 0.18 -2.36 16 26 C -0.11 -2.24 5.92 30.60 0.18 -2.06 16 27 C -0.11 -2.72 5.75 30.59 0.18 -2.54 16 28 C -0.11 -3.54 4.64 30.59 0.14 -3.40 16 29 H 0.25 15.25 8.31 -92.71 -0.77 14.47 16 30 H 0.38 21.32 6.51 -92.71 -0.60 20.72 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.02 0.97 6.16 -2.39 -0.01 0.95 16 33 H 0.41 14.14 6.97 -92.71 -0.65 13.50 16 34 H 0.25 5.64 8.06 -2.91 -0.02 5.62 16 35 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.12 1.72 7.88 -2.38 -0.02 1.71 16 37 H 0.08 2.03 8.07 -2.39 -0.02 2.01 16 38 H 0.11 1.90 8.03 -2.39 -0.02 1.88 16 39 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.06 2.16 6.23 -2.39 -0.01 2.15 16 43 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.05 1.26 7.60 -2.38 -0.02 1.24 16 46 H 0.07 1.33 8.14 -2.38 -0.02 1.32 16 47 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.06 1.41 6.81 -2.38 -0.02 1.39 16 50 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 51 H 0.05 1.89 7.07 -2.39 -0.02 1.87 16 Total: -1.00 -75.67 405.94 1.10 -74.58 By element: Atomic # 1 Polarization: 49.17 SS G_CDS: -0.30 Total: 48.88 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 5.67 Total: 1.89 kcal Atomic # 7 Polarization: -140.49 SS G_CDS: -6.25 Total: -146.74 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.05 Total: -29.01 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.03 Total: 50.41 kcal Total: -75.67 1.10 -74.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276231454.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.592 kcal (2) G-P(sol) polarization free energy of solvation -75.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds