Wall clock time and date at job start Sat Apr 11 2020 08:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99968 * 2 1 4 4 H 1.48508 * 109.46759 * 269.99672 * 3 2 1 5 5 H 1.48493 * 109.47129 * 29.99311 * 3 2 1 6 6 H 1.48502 * 109.47301 * 150.00079 * 3 2 1 7 7 C 1.37881 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00096 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99961 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.46933 * 180.02562 * 9 7 2 11 11 C 1.46853 * 110.99836 * 294.19741 * 10 9 7 12 12 C 1.53029 * 109.55589 * 174.16873 * 11 10 9 13 13 C 1.53140 * 109.26507 * 59.19066 * 12 11 10 14 14 C 1.53068 * 109.14180 * 302.40555 * 13 12 11 15 15 C 1.46871 * 110.99705 * 170.00198 * 10 9 7 16 16 C 1.53026 * 109.48935 * 177.71466 * 14 13 12 17 17 N 1.47033 * 109.24165 * 63.14500 * 16 14 13 18 18 C 1.46898 * 110.99636 * 182.29761 * 17 16 14 19 19 C 1.50692 * 109.47557 * 302.42373 * 18 17 16 20 20 C 1.38093 * 119.58522 * 95.00226 * 19 18 17 21 21 C 1.38782 * 119.28514 * 180.25721 * 20 19 18 22 22 C 1.38421 * 118.49063 * 359.47822 * 21 20 19 23 23 C 1.38872 * 119.10810 * 0.55709 * 22 21 20 24 24 O 1.35678 * 119.68221 * 179.70432 * 23 22 21 25 25 N 1.31933 * 119.58253 * 275.02055 * 19 18 17 26 26 C 1.47018 * 110.74179 * 58.53275 * 17 16 14 27 27 C 1.53091 * 109.29261 * 301.37763 * 26 17 16 28 28 O 1.42956 * 109.45583 * 297.60506 * 14 13 12 29 29 H 0.97005 * 119.99735 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47061 * 59.99820 * 9 7 2 31 31 H 1.09001 * 109.47076 * 299.99967 * 9 7 2 32 32 H 1.08996 * 109.45617 * 294.20490 * 11 10 9 33 33 H 1.09002 * 109.44958 * 54.16777 * 11 10 9 34 34 H 1.09005 * 109.50230 * 179.12521 * 12 11 10 35 35 H 1.08996 * 109.51107 * 299.21202 * 12 11 10 36 36 H 1.08998 * 109.52092 * 182.50484 * 13 12 11 37 37 H 1.09007 * 109.52306 * 62.30141 * 13 12 11 38 38 H 1.08998 * 109.46711 * 65.74311 * 15 10 9 39 39 H 1.08996 * 109.46088 * 305.76122 * 15 10 9 40 40 H 1.09003 * 109.50252 * 303.21909 * 16 14 13 41 41 H 1.08993 * 109.50961 * 183.08308 * 16 14 13 42 42 H 1.09005 * 109.46684 * 182.42156 * 18 17 16 43 43 H 1.09003 * 109.46710 * 62.42988 * 18 17 16 44 44 H 1.08002 * 120.35163 * 359.97181 * 20 19 18 45 45 H 1.08008 * 120.75109 * 179.72887 * 21 20 19 46 46 H 1.07994 * 120.44544 * 180.24758 * 22 21 20 47 47 H 0.96708 * 113.99794 * 269.98192 * 24 23 22 48 48 H 1.09000 * 109.50261 * 61.33080 * 26 17 16 49 49 H 1.09004 * 109.49797 * 181.40473 * 26 17 16 50 50 H 1.09002 * 109.50825 * 176.79151 * 27 26 17 51 51 H 1.08997 * 109.51233 * 296.93194 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 2.9757 -3.6510 -1.2482 12 6 4.0557 -4.7312 -1.1541 13 6 3.3923 -6.0884 -0.9034 14 6 2.5572 -6.0101 0.3770 15 6 1.5211 -4.8931 0.2399 16 6 1.8450 -7.3452 0.6046 17 7 2.8480 -8.4006 0.8099 18 6 2.2061 -9.7111 0.9783 19 6 1.2480 -9.6557 2.1401 20 6 -0.0886 -9.3962 1.9098 21 6 -0.9646 -9.3412 2.9848 22 6 -0.4639 -9.5611 4.2564 23 6 0.8921 -9.8161 4.4138 24 8 1.3963 -10.0273 5.6556 25 7 1.6968 -9.8554 3.3646 26 6 3.7091 -8.0842 1.9587 27 6 4.4030 -6.7413 1.7160 28 8 3.4136 -5.7338 1.4879 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 2.3081 -3.8764 -2.0797 33 1 3.4458 -2.6814 -1.4124 34 1 4.6166 -4.7672 -2.0880 35 1 4.7324 -4.4987 -0.3318 36 1 4.1601 -6.8540 -0.7913 37 1 2.7463 -6.3392 -1.7449 38 1 0.8595 -5.1124 -0.5981 39 1 0.9358 -4.8260 1.1569 40 1 1.2363 -7.5862 -0.2669 41 1 1.2076 -7.2723 1.4857 42 1 2.9679 -10.4666 1.1713 43 1 1.6613 -9.9683 0.0699 44 1 -0.4475 -9.2331 0.9042 45 1 -2.0139 -9.1356 2.8322 46 1 -1.1181 -9.5297 5.1151 47 1 1.6957 -9.2226 6.1006 48 1 3.1024 -8.0223 2.8622 49 1 4.4595 -8.8658 2.0771 50 1 4.9979 -6.4758 2.5899 51 1 5.0513 -6.8190 0.8433 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277939213.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:25:18 Heat of formation + Delta-G solvation = -54.377539 kcal Electronic energy + Delta-G solvation = -32136.851344 eV Core-core repulsion = 28035.646577 eV Total energy + Delta-G solvation = -4101.204767 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.94145 -41.11331 -38.89484 -38.08635 -36.55044 -35.14123 -33.64221 -33.39696 -32.63472 -31.90969 -29.54369 -29.07845 -27.63618 -25.67733 -25.51247 -24.29357 -23.71193 -23.47130 -22.73790 -21.12647 -20.11166 -19.60119 -18.50688 -17.76734 -17.45051 -17.30252 -16.99908 -16.79501 -16.61464 -16.26282 -15.95379 -15.76052 -15.58085 -15.45603 -15.27926 -14.84912 -14.45584 -14.17388 -14.01608 -13.91498 -13.70157 -13.38931 -13.25408 -13.14878 -13.06175 -12.96423 -12.82386 -12.67558 -12.60597 -12.57988 -12.22687 -12.10436 -11.80879 -11.61156 -11.57112 -11.28265 -10.94110 -10.76379 -10.62977 -10.61179 -10.33938 -9.87308 -9.38185 -8.90676 -8.20037 -6.29699 -0.05783 0.20276 1.40268 1.42050 1.53946 2.40108 2.43390 2.63899 2.85308 2.94607 3.12042 3.33562 3.52366 3.75113 3.82986 3.87141 3.96318 4.03450 4.08792 4.13968 4.21582 4.25402 4.35215 4.44671 4.48628 4.50732 4.56585 4.57952 4.65552 4.67133 4.70572 4.81359 4.87250 4.88863 4.93558 5.00850 5.04324 5.07029 5.14125 5.14715 5.20238 5.29074 5.40879 5.51742 5.53660 5.66044 5.86878 5.89861 6.06829 6.40562 6.44775 6.55216 6.72298 6.86800 6.90535 7.39780 8.91033 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014036 B = 0.002788 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.393650 B =10041.914318 C =10880.723931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.969 3.031 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.211 3.789 10 N -0.536 5.536 11 C 0.065 3.935 12 C -0.105 4.105 13 C -0.123 4.123 14 C 0.133 3.867 15 C 0.072 3.928 16 C 0.038 3.962 17 N -0.509 5.509 18 C 0.104 3.896 19 C 0.103 3.897 20 C -0.175 4.175 21 C -0.062 4.062 22 C -0.191 4.191 23 C 0.288 3.712 24 O -0.496 6.496 25 N -0.516 5.516 26 C 0.029 3.971 27 C 0.054 3.946 28 O -0.382 6.382 29 H 0.264 0.736 30 H -0.037 1.037 31 H -0.002 1.002 32 H 0.017 0.983 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.044 0.956 39 H 0.051 0.949 40 H 0.104 0.896 41 H 0.030 0.970 42 H 0.098 0.902 43 H 0.121 0.879 44 H 0.160 0.840 45 H 0.167 0.833 46 H 0.157 0.843 47 H 0.416 0.584 48 H 0.031 0.969 49 H 0.097 0.903 50 H 0.098 0.902 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.527 -23.713 2.665 23.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.559 4.559 8 H 0.078 0.922 9 C 0.085 3.915 10 N -0.260 5.260 11 C -0.063 4.063 12 C -0.142 4.142 13 C -0.161 4.161 14 C 0.093 3.907 15 C -0.057 4.057 16 C -0.091 4.091 17 N -0.231 5.231 18 C -0.025 4.025 19 C -0.037 4.037 20 C -0.196 4.196 21 C -0.087 4.087 22 C -0.213 4.213 23 C 0.110 3.890 24 O -0.305 6.305 25 N -0.237 5.237 26 C -0.099 4.099 27 C -0.023 4.023 28 O -0.301 6.301 29 H 0.073 0.927 30 H -0.019 1.019 31 H 0.016 0.984 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.122 0.878 41 H 0.048 0.952 42 H 0.116 0.884 43 H 0.139 0.861 44 H 0.177 0.823 45 H 0.184 0.816 46 H 0.175 0.825 47 H 0.276 0.724 48 H 0.049 0.951 49 H 0.116 0.884 50 H 0.116 0.884 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.763 -24.121 2.823 24.576 hybrid contribution -1.880 1.508 0.503 2.462 sum 1.883 -22.614 3.326 22.934 Atomic orbital electron populations 1.70086 1.07667 1.27856 1.51910 1.25905 0.95767 1.03124 0.94818 0.85392 0.78511 0.78268 0.78514 1.19570 1.20641 1.19158 1.21443 0.93500 0.91131 1.49866 0.92205 1.19330 0.90046 0.89088 0.93084 1.61841 1.26664 1.02208 1.35299 1.21970 0.95576 0.99542 0.89198 1.21501 0.97069 0.93834 1.01842 1.21979 1.00272 0.97342 0.96499 1.21413 0.89988 0.91915 0.87356 1.21949 0.94508 0.89653 0.99636 1.22670 0.93898 0.90865 1.01641 1.62638 1.19659 1.01623 1.39229 1.21474 0.95522 0.91705 0.93754 1.22193 0.94352 0.94850 0.92276 1.22363 0.93653 1.01613 1.01929 1.21928 1.01924 0.93601 0.91290 1.22374 0.95735 1.02840 1.00313 1.19481 0.89017 0.95230 0.85306 1.84713 1.83196 1.38306 1.24311 1.67020 1.41397 1.15347 0.99943 1.22730 0.97184 0.98316 0.91714 1.22819 0.90815 0.86685 1.01959 1.88189 1.46586 1.45933 1.49401 0.92685 1.01917 0.98421 0.96518 0.92426 0.89903 0.92458 0.89116 0.90606 0.93851 0.93016 0.87784 0.95158 0.88354 0.86146 0.82276 0.81594 0.82539 0.72369 0.95102 0.88437 0.88387 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.15 13.29 21.45 0.28 -56.86 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.52 -30.58 8.43 25.60 0.22 -30.36 16 8 H 0.06 3.48 7.12 -2.91 -0.02 3.46 16 9 C 0.21 11.70 4.72 85.56 0.40 12.10 16 10 N -0.54 -24.43 4.53 -901.03 -4.09 -28.52 16 11 C 0.07 2.60 5.29 86.32 0.46 3.06 16 12 C -0.10 -3.21 5.94 30.65 0.18 -3.02 16 13 C -0.12 -3.20 4.36 30.66 0.13 -3.07 16 14 C 0.13 3.93 0.70 -10.77 -0.01 3.92 16 15 C 0.07 2.68 4.44 86.30 0.38 3.06 16 16 C 0.04 0.87 3.65 86.29 0.32 1.18 16 17 N -0.51 -9.96 4.35 -899.89 -3.92 -13.87 16 18 C 0.10 1.64 5.72 85.55 0.49 2.13 16 19 C 0.10 1.97 4.65 42.51 0.20 2.17 16 20 C -0.18 -2.81 8.33 22.37 0.19 -2.62 16 21 C -0.06 -0.94 10.17 22.44 0.23 -0.71 16 22 C -0.19 -3.29 10.04 22.47 0.23 -3.06 16 23 C 0.29 6.15 7.74 84.78 0.66 6.81 16 24 O -0.50 -9.48 13.56 -89.96 -1.22 -10.70 16 25 N -0.52 -11.85 8.93 -296.98 -2.65 -14.50 16 26 C 0.03 0.63 5.24 86.31 0.45 1.08 16 27 C 0.05 1.33 6.61 72.01 0.48 1.81 16 28 O -0.38 -12.79 9.62 -148.98 -1.43 -14.22 16 29 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 30 H -0.04 -2.18 8.12 -2.39 -0.02 -2.19 16 31 H 0.00 -0.14 7.99 -2.39 -0.02 -0.16 16 32 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 2.55 6.70 -2.39 -0.02 2.54 16 34 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 35 H 0.06 1.92 7.80 -2.39 -0.02 1.91 16 36 H 0.09 2.08 6.07 -2.39 -0.01 2.07 16 37 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.05 2.09 8.02 -2.39 -0.02 2.07 16 40 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.03 0.79 6.43 -2.39 -0.02 0.77 16 42 H 0.10 1.52 8.11 -2.38 -0.02 1.50 16 43 H 0.12 1.32 8.04 -2.39 -0.02 1.30 16 44 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 45 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 46 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 47 H 0.42 4.43 9.06 -74.05 -0.67 3.76 16 48 H 0.03 0.80 6.50 -2.39 -0.02 0.79 16 49 H 0.10 1.84 8.12 -2.38 -0.02 1.82 16 50 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 51 H 0.07 1.52 6.44 -2.39 -0.02 1.51 16 Total: -1.00 -75.06 392.50 -5.27 -80.34 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.26 Total: 16.05 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 5.46 Total: -4.97 kcal Atomic # 7 Polarization: -103.39 SS G_CDS: -10.37 Total: -113.76 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -2.65 Total: -24.92 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -75.06 -5.27 -80.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277939213.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.961 kcal (2) G-P(sol) polarization free energy of solvation -75.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds