Wall clock time and date at job start Sat Apr 11 2020 08:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.50695 * 109.54686 * 19.91498 * 3 2 1 5 5 O 1.21281 * 120.00315 * 127.05054 * 4 3 2 6 6 N 1.34776 * 119.99957 * 307.05249 * 4 3 2 7 7 C 1.46588 * 125.30514 * 354.90873 * 6 4 3 8 8 C 1.53274 * 108.15174 * 177.91434 * 7 6 4 9 9 H 1.09003 * 112.56892 * 222.74264 * 8 7 6 10 10 C 1.54793 * 109.73661 * 95.79746 * 8 7 6 11 11 C 1.54939 * 101.57248 * 212.14442 * 10 8 7 12 12 N 1.47768 * 104.85348 * 37.29116 * 11 10 8 13 13 C 1.46899 * 110.99848 * 214.11506 * 12 11 10 14 14 C 1.53002 * 109.47596 * 291.14198 * 13 12 11 15 15 C 1.50694 * 109.47309 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00000 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00241 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99449 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00071 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46795 * 90.00404 * 19 17 15 21 21 H 1.48501 * 109.47231 * 209.99767 * 19 17 15 22 22 H 1.48498 * 109.47573 * 330.00077 * 19 17 15 23 23 C 1.47623 * 108.80738 * 336.54683 * 12 11 10 24 24 H 1.08996 * 112.72680 * 235.95984 * 23 12 11 25 25 C 1.46613 * 125.30805 * 174.91397 * 6 4 3 26 26 C 1.53183 * 109.61657 * 140.13718 * 3 2 1 27 27 C 1.53097 * 109.16246 * 62.92599 * 26 3 2 28 28 O 1.42905 * 109.40994 * 57.61255 * 27 26 3 29 29 C 1.42903 * 114.09849 * 298.83797 * 28 27 26 30 30 C 1.53087 * 109.41529 * 61.16298 * 29 28 27 31 31 H 1.08995 * 109.74132 * 297.60052 * 7 6 4 32 32 H 1.08999 * 109.73389 * 58.23424 * 7 6 4 33 33 H 1.08999 * 111.00368 * 330.21399 * 10 8 7 34 34 H 1.08994 * 111.00641 * 94.06944 * 10 8 7 35 35 H 1.08996 * 110.36276 * 156.13993 * 11 10 8 36 36 H 1.09005 * 110.35929 * 278.34110 * 11 10 8 37 37 H 1.08992 * 109.46882 * 51.14917 * 13 12 11 38 38 H 1.09005 * 109.46776 * 171.14827 * 13 12 11 39 39 H 1.08993 * 109.47137 * 300.00557 * 14 13 12 40 40 H 1.09005 * 109.46544 * 60.00487 * 14 13 12 41 41 H 0.96998 * 119.99354 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.91566 * 317.17973 * 25 6 4 43 43 H 1.08999 * 109.91710 * 78.46989 * 25 6 4 44 44 H 1.09000 * 109.52521 * 182.83424 * 26 3 2 45 45 H 1.08999 * 109.52131 * 303.02562 * 26 3 2 46 46 H 1.08998 * 109.47966 * 297.62989 * 27 26 3 47 47 H 1.09000 * 109.47853 * 177.59196 * 27 26 3 48 48 H 1.09001 * 109.48155 * 301.17725 * 29 28 27 49 49 H 1.09003 * 109.48571 * 181.14914 * 29 28 27 50 50 H 1.09001 * 109.52272 * 182.48188 * 30 29 28 51 51 H 1.08999 * 109.52179 * 62.29336 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1128 -1.3343 -0.4837 5 8 3.9120 -1.3867 -1.3944 6 7 2.6760 -2.4701 0.0956 7 6 1.7974 -2.5400 1.2670 8 6 1.5086 -4.0165 1.5598 9 1 0.4623 -4.1972 1.8064 10 6 2.4867 -4.5361 2.6412 11 6 2.6568 -6.0175 2.2205 12 7 2.6616 -5.9935 0.7430 13 6 2.0271 -7.1997 0.1949 14 6 2.9105 -8.4157 0.4810 15 6 2.2593 -9.6532 -0.0807 16 1 1.3103 -9.5796 -0.5911 17 6 2.8748 -10.8792 0.0570 18 7 4.0301 -10.9688 0.6790 19 14 2.0671 -12.4132 -0.6387 20 1 2.5211 -12.6206 -2.0373 21 1 2.4468 -13.5893 0.1845 22 1 0.5913 -12.2491 -0.6165 23 6 1.9660 -4.7749 0.2845 24 1 1.1378 -4.9914 -0.3902 25 6 3.0055 -3.8283 -0.3473 26 6 3.1217 1.1084 -0.9248 27 6 2.6699 2.4665 -0.3815 28 8 3.1539 2.6289 0.9532 29 6 2.6685 1.6490 1.8732 30 6 3.1203 0.2581 1.4205 31 1 2.2911 -2.0843 2.1252 32 1 0.8642 -2.0166 1.0589 33 1 3.4376 -4.0052 2.5954 34 1 2.0462 -4.4603 3.6353 35 1 3.6005 -6.4126 2.5965 36 1 1.8227 -6.6146 2.5891 37 1 1.0521 -7.3411 0.6612 38 1 1.9020 -7.0870 -0.8820 39 1 3.8855 -8.2743 0.0148 40 1 3.0357 -8.5285 1.5580 41 1 4.4633 -11.8313 0.7755 42 1 2.9499 -3.8881 -1.4342 43 1 4.0062 -4.0967 -0.0087 44 1 4.2106 1.0754 -0.9630 45 1 2.7167 0.9638 -1.9264 46 1 1.5809 2.5140 -0.3816 47 1 3.0687 3.2612 -1.0120 48 1 1.5795 1.6859 1.9026 49 1 3.0662 1.8548 2.8670 50 1 2.7143 -0.4946 2.0962 51 1 4.2091 0.2079 1.4297 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277940912.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:25:25 Heat of formation + Delta-G solvation = -38.350295 kcal Electronic energy + Delta-G solvation = -31493.126485 eV Core-core repulsion = 27392.616712 eV Total energy + Delta-G solvation = -4100.509774 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.57843 -40.08609 -38.69535 -36.99984 -36.02000 -34.27489 -33.48076 -32.05647 -31.83560 -30.14466 -29.31397 -27.54469 -26.76147 -24.31817 -24.06087 -23.83857 -22.33763 -21.57491 -20.47570 -20.12364 -19.93012 -18.30514 -17.29716 -16.66030 -16.53964 -16.33198 -16.09243 -15.69648 -15.22985 -15.07020 -14.90734 -14.64874 -14.43317 -14.34116 -14.11072 -13.75273 -13.52074 -13.28387 -13.08526 -13.04351 -12.84788 -12.68592 -12.45754 -12.43560 -12.37985 -11.98077 -11.94789 -11.53917 -11.35522 -11.21490 -11.11660 -11.02824 -10.88421 -10.80031 -10.73982 -10.56862 -10.40854 -9.95752 -9.92884 -9.43211 -9.16762 -8.89526 -8.37496 -7.93944 -6.02692 -4.05380 1.85935 2.11457 2.24348 2.62778 3.18287 3.30023 3.33162 3.36405 3.38968 3.81178 3.95201 3.98306 4.05202 4.28215 4.35043 4.36789 4.47042 4.60675 4.71605 4.78133 4.81789 4.85081 5.02387 5.08525 5.11304 5.14336 5.16715 5.23251 5.33380 5.35237 5.41356 5.44129 5.51736 5.59047 5.71571 5.79059 5.87364 5.94909 6.02117 6.10934 6.22065 6.31750 6.37064 6.60236 6.88042 6.88508 7.11948 7.34098 7.39798 7.69230 7.70650 7.83837 8.03358 8.39001 9.01793 9.58560 11.08571 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026152 B = 0.002111 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.419959 B =13258.243882 C =13449.507913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C 0.209 3.791 3 C 0.024 3.976 4 C 0.543 3.457 5 O -0.515 6.515 6 N -0.605 5.605 7 C 0.099 3.901 8 C -0.121 4.121 9 H 0.100 0.900 10 C -0.123 4.123 11 C 0.050 3.950 12 N -0.520 5.520 13 C 0.058 3.942 14 C 0.030 3.970 15 C -0.523 4.523 16 H 0.053 0.947 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.065 3.935 24 H 0.086 0.914 25 C 0.119 3.881 26 C -0.130 4.130 27 C 0.057 3.943 28 O -0.374 6.374 29 C 0.060 3.940 30 C -0.150 4.150 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.023 0.977 38 H 0.061 0.939 39 H 0.025 0.975 40 H 0.016 0.984 41 H 0.261 0.739 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.091 0.909 46 H 0.050 0.950 47 H 0.109 0.891 48 H 0.052 0.948 49 H 0.109 0.891 50 H 0.094 0.906 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.752 27.253 4.370 27.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.077 5.077 2 C -0.109 4.109 3 C 0.017 3.983 4 C 0.328 3.672 5 O -0.389 6.389 6 N -0.338 5.338 7 C -0.024 4.024 8 C -0.140 4.140 9 H 0.118 0.882 10 C -0.161 4.161 11 C -0.077 4.077 12 N -0.244 5.244 13 C -0.069 4.069 14 C -0.007 4.007 15 C -0.562 4.562 16 H 0.071 0.929 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.720 3.280 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.045 4.045 24 H 0.104 0.896 25 C -0.003 4.003 26 C -0.169 4.169 27 C -0.020 4.020 28 O -0.292 6.292 29 C -0.017 4.017 30 C -0.189 4.189 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.069 0.931 37 H 0.041 0.959 38 H 0.079 0.921 39 H 0.043 0.957 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.126 0.874 45 H 0.109 0.891 46 H 0.068 0.932 47 H 0.127 0.873 48 H 0.070 0.930 49 H 0.127 0.873 50 H 0.112 0.888 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.244 27.273 3.755 27.721 hybrid contribution -1.163 -1.398 -0.184 1.828 sum -4.408 25.874 3.571 26.489 Atomic orbital electron populations 1.81286 1.11850 1.07289 1.07243 1.28419 0.94224 0.94011 0.94252 1.18568 0.82939 0.96365 1.00421 1.19320 0.81892 0.83388 0.82595 1.90775 1.33052 1.86116 1.28978 1.48178 1.48734 1.06435 1.30498 1.22068 0.93963 0.98042 0.88344 1.23104 1.00778 0.92981 0.97178 0.88220 1.22816 0.98759 0.96961 0.97560 1.23022 1.02227 0.94728 0.87773 1.63570 1.51728 1.01564 1.07501 1.22557 0.96216 0.89778 0.98319 1.19045 0.95109 0.89448 0.97127 1.21173 1.06164 0.92239 1.36637 0.92859 1.24989 0.94938 0.99043 0.95311 1.69971 1.15939 1.24857 1.42343 0.86602 0.79640 0.82739 0.79049 1.20610 1.21215 1.19973 1.23200 0.94514 0.91291 0.95497 0.89642 1.22088 1.00037 0.78346 0.99828 1.22190 1.04353 0.91914 0.98484 1.22703 0.98477 0.96857 0.83915 1.87989 1.71462 1.51266 1.18487 1.22634 0.98561 0.86516 0.93949 1.22503 1.04154 0.99929 0.92289 0.90405 0.91779 0.90490 0.90674 0.89769 0.93131 0.95874 0.92051 0.95683 0.96559 0.92973 0.90580 0.89428 0.87437 0.89073 0.93185 0.87338 0.93015 0.87339 0.88796 0.87743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.53 18.13 42.15 0.76 -3.76 16 2 C 0.21 1.97 9.19 -20.76 -0.19 1.78 16 3 C 0.02 0.20 0.47 -158.26 -0.07 0.12 16 4 C 0.54 6.10 6.55 -10.99 -0.07 6.03 16 5 O -0.51 -7.37 16.24 5.56 0.09 -7.28 16 6 N -0.61 -6.71 3.28 -172.66 -0.57 -7.28 16 7 C 0.10 0.90 4.95 -3.85 -0.02 0.88 16 8 C -0.12 -1.26 3.90 -88.34 -0.34 -1.60 16 9 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 10 C -0.12 -1.28 6.23 -24.76 -0.15 -1.44 16 11 C 0.05 0.73 5.76 -2.32 -0.01 0.72 16 12 N -0.52 -8.55 4.60 -221.95 -1.02 -9.57 16 13 C 0.06 1.16 4.59 -3.82 -0.02 1.14 16 14 C 0.03 0.76 5.01 -27.88 -0.14 0.62 16 15 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.07 0.87 3.66 -65.52 -0.24 0.63 16 24 H 0.09 1.16 7.70 -51.93 -0.40 0.76 16 25 C 0.12 1.57 6.40 -3.39 -0.02 1.55 16 26 C -0.13 -0.94 4.27 -26.59 -0.11 -1.05 16 27 C 0.06 0.36 6.61 37.21 0.25 0.60 16 28 O -0.37 -2.74 10.77 -35.23 -0.38 -3.12 16 29 C 0.06 0.34 6.61 37.20 0.25 0.58 16 30 C -0.15 -0.89 4.72 -26.59 -0.13 -1.02 16 31 H 0.08 0.54 5.46 -51.93 -0.28 0.26 16 32 H 0.06 0.60 5.85 -51.93 -0.30 0.30 16 33 H 0.08 0.78 7.88 -51.93 -0.41 0.37 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.05 0.78 7.63 -51.93 -0.40 0.38 16 37 H 0.02 0.46 7.86 -51.93 -0.41 0.05 16 38 H 0.06 1.22 8.03 -51.93 -0.42 0.81 16 39 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.02 0.43 7.48 -51.93 -0.39 0.04 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.09 1.26 7.94 -51.93 -0.41 0.85 16 44 H 0.11 0.78 7.93 -51.93 -0.41 0.37 16 45 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.05 0.32 7.39 -51.93 -0.38 -0.06 16 47 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.05 0.31 7.39 -51.93 -0.38 -0.08 16 49 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.09 0.47 5.09 -51.93 -0.26 0.20 16 51 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 393.61 15.07 5.93 5.93 Total: -1.00 -32.51 393.61 -9.12 -41.63 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -8.21 Total: -3.46 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -1.45 Total: -3.75 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.09 Total: -46.39 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -0.29 Total: -10.40 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.51 -9.12 -41.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277940912.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.276 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds