Wall clock time and date at job start Sat Apr 11 2020 08:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48504 * 109.47069 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47376 * 299.99833 * 3 2 1 6 6 H 1.48504 * 109.47485 * 60.00328 * 3 2 1 7 7 C 1.37879 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99803 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00065 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47010 * 179.97438 * 9 7 2 11 11 N 1.46904 * 109.46523 * 179.97438 * 10 9 7 12 12 C 1.49747 * 110.68235 * 69.94952 * 11 10 9 13 13 C 1.51790 * 105.67930 * 118.81514 * 12 11 10 14 14 H 1.08996 * 108.49821 * 273.83541 * 13 12 11 15 15 O 1.40621 * 120.39166 * 147.16300 * 13 12 11 16 16 C 1.44032 * 111.00538 * 175.87466 * 15 13 12 17 17 C 1.52741 * 112.02480 * 57.15770 * 16 15 13 18 18 N 1.48155 * 110.92950 * 315.44281 * 17 16 15 19 19 C 1.34783 * 122.74128 * 228.64450 * 18 17 16 20 20 O 1.21274 * 119.99787 * 179.97438 * 19 18 17 21 21 C 1.50700 * 119.99721 * 0.02562 * 19 18 17 22 22 C 1.53004 * 109.46841 * 179.97438 * 21 19 18 23 23 C 1.50700 * 109.46841 * 179.97438 * 22 21 19 24 24 C 1.34856 * 125.89027 * 275.02462 * 23 22 21 25 25 C 1.40893 * 107.41387 * 179.97438 * 24 23 22 26 26 C 1.34845 * 107.42021 * 0.02562 * 25 24 23 27 27 N 1.36341 * 125.89080 * 95.00389 * 23 22 21 28 28 H 0.97006 * 125.63619 * 0.27697 * 27 23 22 29 29 C 1.45747 * 114.51680 * 48.91602 * 18 17 16 30 30 H 1.08999 * 110.96178 * 61.65335 * 29 18 17 31 31 C 1.49189 * 110.99507 * 189.99728 * 11 10 9 32 32 H 0.96997 * 120.00110 * 359.97438 * 1 2 3 33 33 H 1.08992 * 109.47364 * 59.99307 * 9 7 2 34 34 H 1.09002 * 109.46602 * 299.99749 * 9 7 2 35 35 H 1.09004 * 109.46864 * 59.99841 * 10 9 7 36 36 H 1.08999 * 109.46889 * 299.99602 * 10 9 7 37 37 H 1.09003 * 110.72400 * 359.49016 * 12 11 10 38 38 H 1.09002 * 109.69843 * 237.59407 * 12 11 10 39 39 H 1.08998 * 108.97054 * 296.50307 * 16 15 13 40 40 H 1.09001 * 108.97167 * 177.81129 * 16 15 13 41 41 H 1.09006 * 109.18468 * 195.06592 * 17 16 15 42 42 H 1.08998 * 109.14488 * 75.79038 * 17 16 15 43 43 H 1.09004 * 109.47092 * 59.99828 * 21 19 18 44 44 H 1.08995 * 109.47102 * 299.99614 * 21 19 18 45 45 H 1.08998 * 109.46742 * 60.00315 * 22 21 19 46 46 H 1.08995 * 109.47212 * 299.99859 * 22 21 19 47 47 H 1.07999 * 126.28963 * 359.97438 * 24 23 22 48 48 H 1.07995 * 126.28880 * 179.97438 * 25 24 23 49 49 H 1.08000 * 125.89611 * 179.97438 * 26 25 24 50 50 H 1.08994 * 110.63743 * 94.93007 * 31 11 10 51 51 H 1.08996 * 110.63767 * 331.87410 * 31 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 0.8299 -5.1524 -1.3146 13 6 1.4293 -6.4271 -1.8803 14 1 2.3384 -6.1702 -2.4239 15 8 0.6490 -7.2913 -2.6687 16 6 1.4401 -8.3828 -3.1760 17 6 2.1075 -9.1763 -2.0544 18 7 2.7032 -8.2688 -1.0462 19 6 3.9635 -8.4125 -0.5904 20 8 4.4013 -7.6400 0.2357 21 6 4.8288 -9.5324 -1.1081 22 6 6.2011 -9.4697 -0.4343 23 6 7.0663 -10.5900 -0.9515 24 6 7.0868 -11.8542 -0.4824 25 6 8.0306 -12.5713 -1.2441 26 6 8.5512 -11.7180 -2.1492 27 7 7.9628 -10.5004 -1.9747 28 1 8.1538 -9.7014 -2.4906 29 6 1.8132 -7.2117 -0.5830 30 1 0.9326 -7.6294 -0.0950 31 6 2.4314 -6.0830 0.2430 32 1 -0.4850 0.8400 0.0004 33 1 0.6247 -2.5571 -0.8895 34 1 0.6241 -2.5567 0.8904 35 1 2.8720 -3.6042 0.8905 36 1 2.8719 -3.6043 -0.8895 37 1 1.0171 -4.3168 -1.9890 38 1 -0.2415 -5.2777 -1.1576 39 1 2.2111 -7.9849 -3.8358 40 1 0.7964 -9.0510 -3.7482 41 1 2.8907 -9.8053 -2.4777 42 1 1.3624 -9.8085 -1.5715 43 1 4.9490 -9.4300 -2.1866 44 1 4.3572 -10.4892 -0.8843 45 1 6.0812 -9.5720 0.6442 46 1 6.6726 -8.5129 -0.6584 47 1 6.4896 -12.2450 0.3281 48 1 8.2901 -13.6127 -1.1244 49 1 9.3042 -11.9576 -2.8854 50 1 2.4484 -6.3457 1.3006 51 1 3.4355 -5.8521 -0.1128 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277941597.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:25:41 Heat of formation + Delta-G solvation = -35.474173 kcal Electronic energy + Delta-G solvation = -30752.851461 eV Core-core repulsion = 26652.466405 eV Total energy + Delta-G solvation = -4100.385056 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.19181 -41.87417 -39.93001 -38.57239 -36.04690 -35.47436 -34.64524 -33.17199 -31.76020 -30.77426 -30.06260 -29.52485 -28.45613 -26.35247 -24.99920 -24.31383 -23.16397 -22.80714 -21.43004 -21.33422 -20.95696 -20.11979 -18.64450 -18.54157 -17.91002 -17.49872 -17.40605 -17.03290 -16.61842 -16.36922 -16.07111 -15.78602 -15.66591 -15.26419 -14.95949 -14.75918 -14.52027 -14.39430 -14.21881 -14.06057 -13.88012 -13.74084 -13.63825 -13.23721 -13.10146 -13.02427 -12.88953 -12.85497 -12.62113 -12.60345 -12.39973 -12.26311 -12.02637 -11.96987 -11.77358 -11.41489 -11.30709 -11.23010 -10.69168 -10.57512 -9.72552 -9.59463 -9.37092 -8.90270 -8.21410 -6.33066 1.33736 1.38506 1.39437 1.52651 1.53244 1.71969 2.14258 2.37223 2.39853 2.52184 3.00158 3.11517 3.16411 3.42239 3.68871 3.80942 3.89139 3.99231 4.02467 4.07410 4.16058 4.23258 4.26732 4.28767 4.37525 4.45859 4.47755 4.53813 4.60988 4.64493 4.71257 4.74087 4.76047 4.80936 4.87091 4.89725 4.95398 5.00269 5.09527 5.26762 5.39507 5.42332 5.48284 5.55848 5.72860 5.84261 5.98175 6.01527 6.12748 6.24913 6.26423 6.31480 6.80684 6.83008 7.07433 7.35726 8.90878 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013504 B = 0.002171 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.949222 B =12893.849376 C =14280.317649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.039 3.961 10 C 0.076 3.924 11 N -0.530 5.530 12 C 0.052 3.948 13 C 0.068 3.932 14 H 0.050 0.950 15 O -0.371 6.371 16 C 0.037 3.963 17 C 0.074 3.926 18 N -0.610 5.610 19 C 0.511 3.489 20 O -0.571 6.571 21 C -0.117 4.117 22 C -0.029 4.029 23 C 0.009 3.991 24 C -0.213 4.213 25 C -0.225 4.225 26 C -0.012 4.012 27 N -0.554 5.554 28 H 0.423 0.577 29 C 0.105 3.895 30 H 0.100 0.900 31 C 0.062 3.938 32 H 0.264 0.736 33 H -0.003 1.003 34 H -0.006 1.006 35 H 0.059 0.941 36 H 0.022 0.978 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.143 0.857 41 H 0.131 0.869 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.121 0.879 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.136 0.864 48 H 0.143 0.857 49 H 0.190 0.810 50 H 0.077 0.923 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.273 -29.916 -9.894 33.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.076 0.924 9 C 0.001 3.999 10 C -0.052 4.052 11 N -0.256 5.256 12 C -0.076 4.076 13 C 0.007 3.993 14 H 0.068 0.932 15 O -0.289 6.289 16 C -0.040 4.040 17 C -0.047 4.047 18 N -0.345 5.345 19 C 0.302 3.698 20 O -0.449 6.449 21 C -0.157 4.157 22 C -0.068 4.068 23 C -0.104 4.104 24 C -0.238 4.238 25 C -0.250 4.250 26 C -0.144 4.144 27 N -0.150 5.150 28 H 0.261 0.739 29 C 0.000 4.000 30 H 0.118 0.882 31 C -0.065 4.065 32 H 0.073 0.927 33 H 0.015 0.985 34 H 0.013 0.987 35 H 0.078 0.922 36 H 0.040 0.960 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.160 0.840 41 H 0.149 0.851 42 H 0.113 0.887 43 H 0.131 0.869 44 H 0.139 0.861 45 H 0.098 0.902 46 H 0.085 0.915 47 H 0.154 0.846 48 H 0.160 0.840 49 H 0.207 0.793 50 H 0.096 0.904 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.866 -29.252 -9.186 32.877 hybrid contribution 0.938 1.496 -0.497 1.835 sum 12.804 -27.756 -9.683 32.064 Atomic orbital electron populations 1.70114 1.07743 1.27768 1.51253 1.25967 0.95806 1.03306 0.94575 0.85364 0.78917 0.78611 0.77915 1.18782 1.20113 1.20237 1.21615 0.93417 0.92265 1.51118 0.92415 1.18897 0.94023 0.91573 0.95368 1.22141 0.95460 0.88618 0.98934 1.65042 1.29090 1.02398 1.29107 1.22486 1.00511 0.94719 0.89869 1.22728 0.93743 0.91346 0.91471 0.93213 1.87854 1.35826 1.37291 1.67924 1.23399 0.96690 0.88687 0.95190 1.22746 1.00505 0.92225 0.89214 1.48249 1.12470 1.31059 1.42674 1.21378 0.81242 0.86327 0.80869 1.90740 1.73082 1.46263 1.34840 1.21662 0.94094 0.97320 1.02627 1.19701 0.91936 0.94775 1.00406 1.20249 0.98392 0.96784 0.94952 1.20943 1.04820 0.93523 1.04469 1.21187 1.02682 1.00587 1.00507 1.22305 1.03181 0.84628 1.04256 1.42099 1.32415 1.11975 1.28513 0.73893 1.22525 0.93323 0.88521 0.95629 0.88212 1.22728 0.94483 0.88921 1.00364 0.92672 0.98456 0.98713 0.92199 0.96006 0.92195 0.89810 0.92039 0.83979 0.85062 0.88729 0.86886 0.86112 0.90192 0.91528 0.84642 0.83966 0.79334 0.90414 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.97 45.39 29.54 68.60 2.03 47.42 16 4 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.55 -32.31 9.11 25.60 0.23 -32.08 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 9 C 0.04 2.17 5.01 29.85 0.15 2.32 16 10 C 0.08 3.53 4.51 86.30 0.39 3.92 16 11 N -0.53 -21.21 5.27 -884.51 -4.66 -25.88 16 12 C 0.05 1.88 6.21 85.35 0.53 2.41 16 13 C 0.07 1.94 2.91 31.38 0.09 2.03 16 14 H 0.05 1.47 7.94 -2.39 -0.02 1.45 16 15 O -0.37 -8.90 10.88 -145.52 -1.58 -10.48 16 16 C 0.04 0.47 6.80 71.90 0.49 0.96 16 17 C 0.07 0.77 6.47 85.97 0.56 1.33 16 18 N -0.61 -12.12 2.94 -789.41 -2.32 -14.44 16 19 C 0.51 10.85 7.71 87.66 0.68 11.52 16 20 O -0.57 -17.39 13.13 -3.01 -0.04 -17.43 16 21 C -0.12 -1.42 4.14 29.85 0.12 -1.29 16 22 C -0.03 -0.45 5.04 29.85 0.15 -0.30 16 23 C 0.01 0.13 6.42 41.08 0.26 0.40 16 24 C -0.21 -3.38 10.77 22.14 0.24 -3.14 16 25 C -0.23 -3.20 10.86 22.14 0.24 -2.96 16 26 C -0.01 -0.14 11.94 83.21 0.99 0.86 16 27 N -0.55 -6.26 6.07 -182.77 -1.11 -7.37 16 28 H 0.42 2.85 8.96 -92.70 -0.83 2.02 16 29 C 0.11 2.87 3.49 46.29 0.16 3.03 16 30 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 31 C 0.06 2.15 4.74 85.83 0.41 2.55 16 32 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 33 H 0.00 -0.17 7.04 -2.39 -0.02 -0.19 16 34 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 35 H 0.06 2.78 8.09 -2.39 -0.02 2.76 16 36 H 0.02 0.99 8.02 -2.39 -0.02 0.97 16 37 H 0.06 2.36 6.89 -2.39 -0.02 2.35 16 38 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 39 H 0.06 0.74 8.07 -2.39 -0.02 0.72 16 40 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.13 0.44 6.33 -2.38 -0.02 0.43 16 42 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.11 0.88 7.73 -2.39 -0.02 0.86 16 44 H 0.12 0.98 8.10 -2.39 -0.02 0.97 16 45 H 0.08 1.45 8.10 -2.39 -0.02 1.43 16 46 H 0.07 1.15 8.10 -2.39 -0.02 1.13 16 47 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 48 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 49 H 0.19 0.90 8.06 -2.91 -0.02 0.88 16 50 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 51 H 0.05 2.06 6.23 -2.39 -0.01 2.04 16 Total: -1.00 -78.31 402.69 -1.16 -79.47 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.09 Total: 14.16 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 6.15 Total: -7.89 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -7.81 Total: -105.24 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -1.62 Total: -27.92 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -78.31 -1.16 -79.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277941597.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.996 kcal (2) G-P(sol) polarization free energy of solvation -78.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds