Wall clock time and date at job start Sat Apr 11 2020 08:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.52378 * 2 1 4 4 C 1.53042 * 109.49426 * 239.92015 * 2 1 3 5 5 C 1.53071 * 109.65614 * 178.74881 * 4 2 1 6 6 C 1.53196 * 109.29674 * 61.15732 * 5 4 2 7 7 H 1.08997 * 109.58885 * 65.42937 * 6 5 4 8 8 C 1.52994 * 109.58650 * 185.71895 * 6 5 4 9 9 N 1.46505 * 109.47192 * 179.54980 * 8 6 5 10 10 C 1.34770 * 120.00243 * 180.02562 * 9 8 6 11 11 O 1.21614 * 120.00318 * 359.97438 * 10 9 8 12 12 C 1.47418 * 120.00117 * 180.02562 * 10 9 8 13 13 C 1.36093 * 126.45291 * 180.02562 * 12 10 9 14 14 O 1.34247 * 106.95361 * 179.70274 * 13 12 10 15 15 C 1.34056 * 108.22727 * 0.26368 * 14 13 12 16 16 C 1.50697 * 125.37981 * 179.97438 * 15 14 13 17 17 C 1.53001 * 117.50008 * 8.76518 * 16 15 14 18 18 C 1.53000 * 117.49872 * 300.10940 * 16 15 14 19 19 N 1.29934 * 109.24138 * 359.97438 * 15 14 13 20 20 N 1.46927 * 108.88753 * 305.57476 * 6 5 4 21 21 C 1.36934 * 120.63002 * 233.51434 * 20 6 5 22 22 H 1.07998 * 120.00083 * 49.48749 * 21 20 6 23 23 C 1.38823 * 120.00059 * 229.48742 * 21 20 6 24 24 N 1.31618 * 120.00059 * 188.61602 * 23 21 20 25 25 Si 1.86800 * 119.99756 * 8.61885 * 23 21 20 26 26 H 1.48496 * 109.47224 * 84.40828 * 25 23 21 27 27 H 1.48498 * 109.46854 * 204.40795 * 25 23 21 28 28 H 1.48505 * 109.47159 * 324.40675 * 25 23 21 29 29 C 1.46929 * 118.73982 * 53.53867 * 20 6 5 30 30 H 1.08999 * 109.46502 * 299.91792 * 1 2 3 31 31 H 1.09001 * 109.47275 * 59.91695 * 1 2 3 32 32 H 1.08999 * 109.46994 * 179.91591 * 1 2 3 33 33 H 1.09000 * 109.46428 * 180.08327 * 3 2 1 34 34 H 1.08997 * 109.47234 * 300.08471 * 3 2 1 35 35 H 1.08997 * 109.46949 * 60.08288 * 3 2 1 36 36 H 1.09005 * 109.45862 * 298.70445 * 4 2 1 37 37 H 1.09003 * 109.46247 * 58.67504 * 4 2 1 38 38 H 1.09001 * 109.38969 * 301.27552 * 5 4 2 39 39 H 1.09004 * 109.62287 * 181.17126 * 5 4 2 40 40 H 1.09002 * 109.47522 * 59.55101 * 8 6 5 41 41 H 1.08991 * 109.47339 * 299.54804 * 8 6 5 42 42 H 0.97005 * 119.99703 * 359.97438 * 9 8 6 43 43 H 1.08001 * 126.51678 * 359.96510 * 13 12 10 44 44 H 1.08999 * 115.55015 * 154.43657 * 16 15 14 45 45 H 1.09008 * 117.50010 * 0.02562 * 17 16 15 46 46 H 1.08998 * 117.50006 * 145.02057 * 17 16 15 47 47 H 1.08997 * 117.50137 * 214.98075 * 18 16 15 48 48 H 1.09004 * 117.49947 * 359.97438 * 18 16 15 49 49 H 0.96995 * 120.00453 * 180.02562 * 24 23 21 50 50 H 1.09007 * 109.58233 * 66.17501 * 29 20 6 51 51 H 1.08996 * 109.58661 * 186.45839 * 29 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0408 -0.7231 -1.2484 5 6 3.5712 -0.6981 -1.2680 6 6 4.1053 -1.4269 -0.0309 7 1 3.8396 -2.4825 -0.0855 8 6 5.6273 -1.2836 0.0315 9 7 6.1342 -1.9722 1.2211 10 6 7.4560 -1.9786 1.4840 11 8 8.2281 -1.4132 0.7336 12 6 7.9662 -2.6720 2.6808 13 6 9.2670 -2.7607 3.0709 14 8 9.2863 -3.4697 4.2107 15 6 8.0262 -3.8144 4.5116 16 6 7.6051 -4.6184 5.7146 17 6 8.6661 -4.9060 6.7787 18 6 8.1806 -6.0287 5.8585 19 7 7.2253 -3.3458 3.6020 20 7 3.5047 -0.8292 1.1695 21 6 4.2937 -0.3795 2.1943 22 1 5.1305 0.2706 1.9863 23 6 4.0178 -0.7592 3.5008 24 7 4.6648 -0.1976 4.4999 25 14 2.7283 -2.0674 3.8406 26 1 3.3438 -3.4131 3.7169 27 1 2.1952 -1.8914 5.2154 28 1 1.6209 -1.9375 2.8598 29 6 2.0414 -0.7239 1.2495 30 1 -0.3632 0.5126 0.8907 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 3.1314 1.4409 -0.0015 34 1 1.6773 1.9566 -0.8892 35 1 1.6798 1.9557 0.8907 36 1 1.6967 -1.7573 -1.2353 37 1 1.6583 -0.2243 -2.1390 38 1 3.9164 0.3358 -1.2586 39 1 3.9339 -1.1950 -2.1678 40 1 5.8910 -0.2272 0.0832 41 1 6.0707 -1.7255 -0.8606 42 1 5.5184 -2.4229 1.8200 43 1 10.1207 -2.3372 2.5627 44 1 6.5825 -4.4549 6.0547 45 1 9.6687 -4.5134 6.6089 46 1 8.3415 -4.9322 7.8189 47 1 7.5368 -6.7930 6.2936 48 1 8.8635 -6.3752 5.0827 49 1 4.4723 -0.4632 5.4128 50 1 1.6053 -1.7217 1.2979 51 1 1.7638 -0.1602 2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089707707.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:24:29 Heat of formation + Delta-G solvation = 36.518730 kcal Electronic energy + Delta-G solvation = -32347.928056 eV Core-core repulsion = 28250.664847 eV Total energy + Delta-G solvation = -4097.263209 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.11605 -39.26777 -38.38502 -37.25619 -35.10530 -34.49854 -33.03022 -32.10132 -30.73751 -30.00634 -27.65766 -26.75135 -25.48637 -24.42812 -24.09634 -22.77006 -22.55162 -22.33048 -20.71750 -20.04274 -19.43505 -18.34733 -17.68529 -16.69157 -16.45103 -16.15465 -15.61797 -15.39596 -15.20033 -14.89065 -14.62306 -14.12894 -13.94539 -13.69686 -13.50755 -13.38819 -13.11298 -12.85879 -12.51060 -12.43305 -12.30777 -11.81932 -11.77238 -11.55444 -11.50623 -11.37476 -11.32242 -11.07701 -10.82197 -10.73731 -10.69748 -10.62965 -10.54405 -10.36701 -10.31877 -9.88071 -9.68191 -9.62964 -9.41806 -9.23471 -8.64037 -8.44439 -8.08529 -6.55010 -5.92974 -3.54357 1.44011 2.35490 2.75296 3.39153 3.46729 3.51818 3.61973 3.76608 3.95554 4.10683 4.56924 4.59875 4.73842 4.90372 4.97078 5.15302 5.22110 5.28471 5.37845 5.39208 5.42135 5.47439 5.57080 5.64872 5.77277 5.80822 5.88037 5.89306 5.90194 6.00233 6.01658 6.05109 6.10247 6.19548 6.22957 6.32884 6.34737 6.37378 6.41987 6.44188 6.56531 6.64014 6.76646 6.79428 6.90686 6.97564 7.13835 7.24742 7.82975 8.14433 8.40158 8.49943 8.93017 8.99307 9.71228 10.18308 11.20290 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014176 B = 0.003696 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.634868 B = 7573.560548 C = 8737.059845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 C -0.126 4.126 4 C -0.096 4.096 5 C -0.130 4.130 6 C 0.159 3.841 7 H 0.034 0.966 8 C 0.138 3.862 9 N -0.666 5.666 10 C 0.595 3.405 11 O -0.566 6.566 12 C -0.046 4.046 13 C -0.008 4.008 14 O -0.202 6.202 15 C 0.217 3.783 16 C -0.066 4.066 17 C -0.163 4.163 18 C -0.160 4.160 19 N -0.434 5.434 20 N -0.600 5.600 21 C -0.267 4.267 22 H 0.074 0.926 23 C 0.054 3.946 24 N -0.896 5.896 25 Si 0.844 3.156 26 H -0.281 1.281 27 H -0.303 1.303 28 H -0.239 1.239 29 C 0.152 3.848 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.034 0.966 35 H 0.046 0.954 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.419 0.581 43 H 0.228 0.772 44 H 0.146 0.854 45 H 0.103 0.897 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.099 0.901 49 H 0.261 0.739 50 H 0.029 0.971 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.162 -8.356 -2.404 8.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.091 4.091 3 C -0.183 4.183 4 C -0.134 4.134 5 C -0.169 4.169 6 C 0.053 3.947 7 H 0.051 0.949 8 C 0.014 3.986 9 N -0.314 5.314 10 C 0.380 3.620 11 O -0.447 6.447 12 C -0.166 4.166 13 C -0.082 4.082 14 O -0.089 6.089 15 C 0.008 3.992 16 C -0.085 4.085 17 C -0.201 4.201 18 C -0.198 4.198 19 N -0.163 5.163 20 N -0.326 5.326 21 C -0.396 4.396 22 H 0.091 0.909 23 C -0.149 4.149 24 N -0.536 5.536 25 Si 0.673 3.327 26 H -0.207 1.207 27 H -0.230 1.230 28 H -0.164 1.164 29 C 0.027 3.973 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.257 0.743 43 H 0.244 0.756 44 H 0.164 0.836 45 H 0.121 0.879 46 H 0.127 0.873 47 H 0.127 0.873 48 H 0.118 0.882 49 H 0.071 0.929 50 H 0.046 0.954 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.049 -8.020 -2.733 8.718 hybrid contribution -0.347 -0.546 0.743 0.985 sum 1.702 -8.566 -1.990 8.957 Atomic orbital electron populations 1.21810 0.95876 1.00889 1.00924 1.21126 0.93873 0.96656 0.97415 1.21710 1.02478 0.94553 0.99558 1.21413 0.95514 0.99575 0.96851 1.21994 0.95797 1.01592 0.97561 1.20840 0.90712 0.94998 0.88155 0.94857 1.21261 0.93302 0.97884 0.86161 1.45720 1.06371 1.52703 1.26620 1.16663 0.83104 0.79703 0.82541 1.90735 1.57306 1.47267 1.49374 1.21909 0.90807 1.04825 0.99108 1.25119 1.00124 0.96804 0.86105 1.84273 1.33124 1.55209 1.36251 1.24978 0.76902 0.99587 0.97725 1.20212 1.00357 0.96457 0.91470 1.23099 0.98909 1.01940 0.96109 1.23125 1.03311 0.90731 1.02641 1.70815 1.32731 1.10668 1.02123 1.44284 1.00711 1.70202 1.17354 1.18563 1.11331 1.25250 0.84483 0.90863 1.25658 0.96514 0.96604 0.96082 1.69770 1.42287 1.42709 0.98840 0.87701 0.84045 0.83647 0.77322 1.20743 1.23012 1.16354 1.21714 0.84690 0.96253 0.94642 0.93005 0.93464 0.93340 0.91239 0.94698 0.93462 0.92890 0.93179 0.91297 0.92741 0.91191 0.92521 0.74258 0.75615 0.83632 0.87857 0.87337 0.87317 0.88241 0.92917 0.95369 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.48 37.16 0.32 -1.64 16 2 C -0.09 -1.47 0.77 -154.39 -0.12 -1.59 16 3 C -0.13 -2.12 7.99 37.16 0.30 -1.82 16 4 C -0.10 -1.43 4.70 -26.67 -0.13 -1.56 16 5 C -0.13 -2.03 5.04 -26.59 -0.13 -2.17 16 6 C 0.16 2.95 3.01 -67.60 -0.20 2.75 16 7 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 8 C 0.14 2.68 4.50 -4.04 -0.02 2.66 16 9 N -0.67 -14.30 4.13 -61.39 -0.25 -14.55 16 10 C 0.60 12.94 7.81 -12.53 -0.10 12.84 16 11 O -0.57 -12.88 16.89 5.27 0.09 -12.79 16 12 C -0.05 -0.92 6.99 -83.02 -0.58 -1.50 16 13 C -0.01 -0.14 11.94 29.96 0.36 0.22 16 14 O -0.20 -3.18 10.40 6.52 0.07 -3.11 16 15 C 0.22 3.67 7.80 -13.08 -0.10 3.57 16 16 C -0.07 -0.86 6.33 -91.77 -0.58 -1.44 16 17 C -0.16 -1.58 10.16 -26.70 -0.27 -1.85 16 18 C -0.16 -1.53 10.24 -26.70 -0.27 -1.80 16 19 N -0.43 -8.86 11.06 -7.65 -0.08 -8.95 16 20 N -0.60 -12.87 1.85 -164.77 -0.30 -13.17 16 21 C -0.27 -6.81 6.59 -15.06 -0.10 -6.91 16 22 H 0.07 2.15 7.11 -52.49 -0.37 1.77 16 23 C 0.05 1.45 5.28 -17.43 -0.09 1.36 16 24 N -0.90 -26.27 13.97 55.49 0.78 -25.49 16 25 Si 0.84 20.40 26.63 -169.99 -4.53 15.87 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 28 H -0.24 -5.29 3.87 56.52 0.22 -5.08 16 29 C 0.15 3.05 2.71 -3.71 -0.01 3.04 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 1.31 5.98 -51.93 -0.31 1.00 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 1.13 6.35 -51.93 -0.33 0.80 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.49 7.47 -51.93 -0.39 1.11 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.42 9.63 7.04 -40.82 -0.29 9.34 16 43 H 0.23 2.90 8.06 -52.49 -0.42 2.48 16 44 H 0.15 1.92 8.14 -51.93 -0.42 1.50 16 45 H 0.10 1.01 7.94 -51.92 -0.41 0.59 16 46 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 50 H 0.03 0.58 6.36 -51.93 -0.33 0.25 16 51 H 0.06 1.41 6.49 -51.93 -0.34 1.07 16 LS Contribution 398.44 15.07 6.00 6.00 Total: -1.00 -31.23 398.44 -8.40 -39.62 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -8.43 Total: 12.40 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -1.74 Total: 4.17 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: 0.13 Total: -62.16 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: 0.16 Total: -15.91 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.53 Total: 15.87 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.23 -8.40 -39.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089707707.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.143 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds