Wall clock time and date at job start Sat Apr 11 2020 08:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.52378 * 2 1 4 4 C 1.53042 * 109.49426 * 239.92015 * 2 1 3 5 5 C 1.53071 * 109.65614 * 178.74881 * 4 2 1 6 6 C 1.53196 * 109.29674 * 61.15732 * 5 4 2 7 7 H 1.08997 * 109.58885 * 65.42937 * 6 5 4 8 8 C 1.52994 * 109.58650 * 185.71895 * 6 5 4 9 9 N 1.46505 * 109.47192 * 179.54980 * 8 6 5 10 10 C 1.34770 * 120.00243 * 180.02562 * 9 8 6 11 11 O 1.21614 * 120.00318 * 359.97438 * 10 9 8 12 12 C 1.47418 * 120.00117 * 180.02562 * 10 9 8 13 13 C 1.36093 * 126.45291 * 180.02562 * 12 10 9 14 14 O 1.34247 * 106.95361 * 179.70274 * 13 12 10 15 15 C 1.34056 * 108.22727 * 0.26368 * 14 13 12 16 16 C 1.50697 * 125.37981 * 179.97438 * 15 14 13 17 17 C 1.53001 * 117.50008 * 8.76518 * 16 15 14 18 18 C 1.53000 * 117.49872 * 300.10940 * 16 15 14 19 19 N 1.29934 * 109.24138 * 359.97438 * 15 14 13 20 20 N 1.46927 * 108.88753 * 305.57476 * 6 5 4 21 21 C 1.36934 * 120.63002 * 233.51434 * 20 6 5 22 22 H 1.07998 * 120.00083 * 49.48749 * 21 20 6 23 23 C 1.38823 * 120.00059 * 229.48742 * 21 20 6 24 24 N 1.31618 * 120.00059 * 188.61602 * 23 21 20 25 25 Si 1.86800 * 119.99756 * 8.61885 * 23 21 20 26 26 H 1.48496 * 109.47224 * 84.40828 * 25 23 21 27 27 H 1.48498 * 109.46854 * 204.40795 * 25 23 21 28 28 H 1.48505 * 109.47159 * 324.40675 * 25 23 21 29 29 C 1.46929 * 118.73982 * 53.53867 * 20 6 5 30 30 H 1.08999 * 109.46502 * 299.91792 * 1 2 3 31 31 H 1.09001 * 109.47275 * 59.91695 * 1 2 3 32 32 H 1.08999 * 109.46994 * 179.91591 * 1 2 3 33 33 H 1.09000 * 109.46428 * 180.08327 * 3 2 1 34 34 H 1.08997 * 109.47234 * 300.08471 * 3 2 1 35 35 H 1.08997 * 109.46949 * 60.08288 * 3 2 1 36 36 H 1.09005 * 109.45862 * 298.70445 * 4 2 1 37 37 H 1.09003 * 109.46247 * 58.67504 * 4 2 1 38 38 H 1.09001 * 109.38969 * 301.27552 * 5 4 2 39 39 H 1.09004 * 109.62287 * 181.17126 * 5 4 2 40 40 H 1.09002 * 109.47522 * 59.55101 * 8 6 5 41 41 H 1.08991 * 109.47339 * 299.54804 * 8 6 5 42 42 H 0.97005 * 119.99703 * 359.97438 * 9 8 6 43 43 H 1.08001 * 126.51678 * 359.96510 * 13 12 10 44 44 H 1.08999 * 115.55015 * 154.43657 * 16 15 14 45 45 H 1.09008 * 117.50010 * 0.02562 * 17 16 15 46 46 H 1.08998 * 117.50006 * 145.02057 * 17 16 15 47 47 H 1.08997 * 117.50137 * 214.98075 * 18 16 15 48 48 H 1.09004 * 117.49947 * 359.97438 * 18 16 15 49 49 H 0.96995 * 120.00453 * 180.02562 * 24 23 21 50 50 H 1.09007 * 109.58233 * 66.17501 * 29 20 6 51 51 H 1.08996 * 109.58661 * 186.45839 * 29 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0408 -0.7231 -1.2484 5 6 3.5712 -0.6981 -1.2680 6 6 4.1053 -1.4269 -0.0309 7 1 3.8396 -2.4825 -0.0855 8 6 5.6273 -1.2836 0.0315 9 7 6.1342 -1.9722 1.2211 10 6 7.4560 -1.9786 1.4840 11 8 8.2281 -1.4132 0.7336 12 6 7.9662 -2.6720 2.6808 13 6 9.2670 -2.7607 3.0709 14 8 9.2863 -3.4697 4.2107 15 6 8.0262 -3.8144 4.5116 16 6 7.6051 -4.6184 5.7146 17 6 8.6661 -4.9060 6.7787 18 6 8.1806 -6.0287 5.8585 19 7 7.2253 -3.3458 3.6020 20 7 3.5047 -0.8292 1.1695 21 6 4.2937 -0.3795 2.1943 22 1 5.1305 0.2706 1.9863 23 6 4.0178 -0.7592 3.5008 24 7 4.6648 -0.1976 4.4999 25 14 2.7283 -2.0674 3.8406 26 1 3.3438 -3.4131 3.7169 27 1 2.1952 -1.8914 5.2154 28 1 1.6209 -1.9375 2.8598 29 6 2.0414 -0.7239 1.2495 30 1 -0.3632 0.5126 0.8907 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 3.1314 1.4409 -0.0015 34 1 1.6773 1.9566 -0.8892 35 1 1.6798 1.9557 0.8907 36 1 1.6967 -1.7573 -1.2353 37 1 1.6583 -0.2243 -2.1390 38 1 3.9164 0.3358 -1.2586 39 1 3.9339 -1.1950 -2.1678 40 1 5.8910 -0.2272 0.0832 41 1 6.0707 -1.7255 -0.8606 42 1 5.5184 -2.4229 1.8200 43 1 10.1207 -2.3372 2.5627 44 1 6.5825 -4.4549 6.0547 45 1 9.6687 -4.5134 6.6089 46 1 8.3415 -4.9322 7.8189 47 1 7.5368 -6.7930 6.2936 48 1 8.8635 -6.3752 5.0827 49 1 4.4723 -0.4632 5.4128 50 1 1.6053 -1.7217 1.2979 51 1 1.7638 -0.1602 2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089707707.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:24:28 Heat of formation + Delta-G solvation = 15.161912 kcal Electronic energy + Delta-G solvation = -32348.854157 eV Core-core repulsion = 28250.664847 eV Total energy + Delta-G solvation = -4098.189310 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.46660 -40.85923 -39.95376 -38.15154 -36.68400 -35.91375 -34.88437 -33.69716 -32.52221 -31.36122 -29.08133 -28.06250 -27.27705 -25.90694 -25.24751 -24.39051 -23.77177 -23.32255 -22.03854 -21.70767 -20.90436 -19.85227 -19.15026 -18.24722 -17.88212 -17.59701 -17.13006 -16.88663 -16.64062 -16.58904 -15.71902 -15.63829 -15.49016 -15.28354 -14.96168 -14.81114 -14.57477 -14.49655 -14.16665 -13.95621 -13.43706 -13.33486 -13.06261 -12.81798 -12.76172 -12.68517 -12.60445 -12.54402 -12.46636 -12.27847 -12.08308 -11.94450 -11.84384 -11.74215 -11.60072 -11.45868 -11.25282 -11.15139 -11.04896 -10.87934 -10.40977 -10.04506 -9.75261 -8.38567 -8.05558 -5.63101 0.06878 0.94469 1.41102 1.47901 1.48847 1.50480 2.15070 2.41452 2.52590 2.71853 2.90344 3.24036 3.33637 3.65419 3.73229 3.83284 3.91712 3.96638 3.97585 4.10352 4.14936 4.27495 4.37730 4.45814 4.46063 4.60336 4.63455 4.69585 4.70735 4.77965 4.85774 4.87075 4.92147 5.00903 5.01431 5.04978 5.06733 5.08549 5.13401 5.14369 5.16870 5.21928 5.32044 5.47240 5.48811 5.57358 5.60816 5.77444 6.07111 6.36938 6.40947 6.70742 7.10234 7.20728 7.68539 8.19224 9.11263 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014176 B = 0.003696 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.634868 B = 7573.560548 C = 8737.059845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 C -0.121 4.121 4 C -0.091 4.091 5 C -0.124 4.124 6 C 0.159 3.841 7 H 0.045 0.955 8 C 0.139 3.861 9 N -0.672 5.672 10 C 0.589 3.411 11 O -0.585 6.585 12 C -0.092 4.092 13 C 0.018 3.982 14 O -0.191 6.191 15 C 0.224 3.776 16 C -0.107 4.107 17 C -0.143 4.143 18 C -0.136 4.136 19 N -0.482 5.482 20 N -0.609 5.609 21 C -0.229 4.229 22 H 0.025 0.975 23 C 0.005 3.995 24 N -0.947 5.947 25 Si 0.894 3.106 26 H -0.289 1.289 27 H -0.319 1.319 28 H -0.203 1.203 29 C 0.149 3.851 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.062 0.938 35 H 0.030 0.970 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.084 0.916 40 H 0.041 0.959 41 H 0.080 0.920 42 H 0.410 0.590 43 H 0.262 0.738 44 H 0.136 0.864 45 H 0.104 0.896 46 H 0.131 0.869 47 H 0.133 0.867 48 H 0.102 0.898 49 H 0.254 0.746 50 H 0.034 0.966 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.119 -10.285 -3.962 11.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.088 4.088 3 C -0.178 4.178 4 C -0.129 4.129 5 C -0.163 4.163 6 C 0.053 3.947 7 H 0.063 0.937 8 C 0.015 3.985 9 N -0.319 5.319 10 C 0.375 3.625 11 O -0.468 6.468 12 C -0.211 4.211 13 C -0.056 4.056 14 O -0.077 6.077 15 C 0.015 3.985 16 C -0.126 4.126 17 C -0.181 4.181 18 C -0.174 4.174 19 N -0.211 5.211 20 N -0.335 5.335 21 C -0.359 4.359 22 H 0.043 0.957 23 C -0.192 4.192 24 N -0.590 5.590 25 Si 0.722 3.278 26 H -0.216 1.216 27 H -0.247 1.247 28 H -0.127 1.127 29 C 0.024 3.976 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.060 0.940 41 H 0.098 0.902 42 H 0.247 0.753 43 H 0.277 0.723 44 H 0.154 0.846 45 H 0.123 0.877 46 H 0.149 0.851 47 H 0.151 0.849 48 H 0.120 0.880 49 H 0.063 0.937 50 H 0.051 0.949 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.970 -9.952 -4.354 10.906 hybrid contribution 0.076 0.100 1.207 1.213 sum 1.046 -9.852 -3.147 10.395 Atomic orbital electron populations 1.21764 0.93510 1.01894 1.01861 1.21069 0.95726 0.95727 0.96259 1.21648 1.00643 0.95350 1.00143 1.21414 0.94379 1.00298 0.96792 1.21944 0.96749 1.00766 0.96829 1.21014 0.89754 0.95744 0.88141 0.93749 1.21355 0.94440 0.96230 0.86437 1.45803 1.06364 1.52720 1.26981 1.16984 0.83057 0.79444 0.82997 1.90692 1.57556 1.48260 1.50284 1.21880 0.92402 1.07193 0.99637 1.25702 0.99766 0.94719 0.85417 1.84310 1.32688 1.54884 1.35866 1.25738 0.76733 0.98366 0.97681 1.20441 1.01101 0.99197 0.91898 1.23254 0.97621 1.00685 0.96494 1.23276 1.02505 0.89478 1.02139 1.70747 1.34286 1.12541 1.03532 1.44340 1.01293 1.70539 1.17344 1.18097 1.09664 1.22763 0.85405 0.95731 1.26148 0.98619 0.98536 0.95920 1.69921 1.45034 1.45101 0.98937 0.86935 0.83087 0.80730 0.77007 1.21631 1.24727 1.12658 1.21697 0.83463 0.96541 0.95879 0.93605 0.91096 0.92310 0.93989 0.91906 0.95047 0.91785 0.90354 0.92400 0.89708 0.94016 0.90197 0.75289 0.72273 0.84599 0.87719 0.85060 0.84895 0.87976 0.93715 0.94885 0.94478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.48 71.99 0.61 -2.67 16 2 C -0.09 -2.62 0.77 -52.10 -0.04 -2.66 16 3 C -0.12 -3.91 7.99 71.98 0.58 -3.33 16 4 C -0.09 -2.35 4.70 30.63 0.14 -2.21 16 5 C -0.12 -3.55 5.04 30.68 0.15 -3.40 16 6 C 0.16 5.77 3.01 44.97 0.14 5.90 16 7 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 8 C 0.14 5.52 4.50 86.38 0.39 5.91 16 9 N -0.67 -30.17 4.13 -466.39 -1.93 -32.10 16 10 C 0.59 26.82 7.81 86.66 0.68 27.49 16 11 O -0.58 -27.57 16.89 -4.08 -0.07 -27.64 16 12 C -0.09 -3.84 6.99 40.41 0.28 -3.56 16 13 C 0.02 0.58 11.94 67.32 0.80 1.39 16 14 O -0.19 -5.96 10.40 0.42 0.00 -5.95 16 15 C 0.22 7.73 7.80 88.39 0.69 8.42 16 16 C -0.11 -2.77 6.33 -11.54 -0.07 -2.84 16 17 C -0.14 -2.48 10.16 30.62 0.31 -2.17 16 18 C -0.14 -2.31 10.24 30.62 0.31 -1.99 16 19 N -0.48 -20.55 11.06 -293.03 -3.24 -23.79 16 20 N -0.61 -26.35 1.85 -675.22 -1.25 -27.60 16 21 C -0.23 -12.25 6.59 84.04 0.55 -11.70 16 22 H 0.03 1.57 7.11 -2.91 -0.02 1.55 16 23 C 0.01 0.30 5.28 84.86 0.45 0.75 16 24 N -0.95 -58.89 13.97 21.65 0.30 -58.59 16 25 Si 0.89 43.47 26.63 68.60 1.83 45.30 16 26 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 27 H -0.32 -16.28 7.11 99.48 0.71 -15.57 16 28 H -0.20 -8.64 3.87 99.48 0.39 -8.26 16 29 C 0.15 5.79 2.71 86.36 0.23 6.03 16 30 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.04 1.58 5.98 -2.39 -0.01 1.56 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.06 1.82 6.35 -2.39 -0.02 1.80 16 39 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.04 1.88 7.47 -2.39 -0.02 1.86 16 41 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 42 H 0.41 19.78 7.04 -92.70 -0.65 19.13 16 43 H 0.26 6.37 8.06 -2.91 -0.02 6.35 16 44 H 0.14 3.72 8.14 -2.39 -0.02 3.70 16 45 H 0.10 1.81 7.94 -2.38 -0.02 1.79 16 46 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 49 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 50 H 0.03 1.28 6.36 -2.38 -0.02 1.26 16 51 H 0.04 1.63 6.49 -2.39 -0.02 1.62 16 Total: -1.00 -74.02 398.44 1.82 -72.20 By element: Atomic # 1 Polarization: 38.86 SS G_CDS: -0.04 Total: 38.82 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 6.21 Total: 19.35 kcal Atomic # 7 Polarization: -135.97 SS G_CDS: -6.11 Total: -142.08 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -0.06 Total: -33.59 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.83 Total: 45.30 kcal Total: -74.02 1.82 -72.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089707707.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.364 kcal (2) G-P(sol) polarization free energy of solvation -74.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds