Wall clock time and date at job start Sat Apr 11 2020 08:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35669 * 117.00393 * 2 1 4 4 C 1.39280 * 119.61596 * 179.97438 * 3 2 1 5 5 C 1.38335 * 119.30545 * 180.02562 * 4 3 2 6 6 C 1.38777 * 118.55595 * 0.02562 * 5 4 3 7 7 C 1.39136 * 119.19041 * 359.97438 * 6 5 4 8 8 C 1.48152 * 119.68808 * 179.97438 * 7 6 5 9 9 O 1.21514 * 120.00217 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99695 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99818 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46832 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.58912 * 59.54154 * 12 11 10 14 14 C 1.53195 * 109.58792 * 179.82969 * 12 11 10 15 15 C 1.53032 * 109.31605 * 174.42262 * 14 12 11 16 16 C 1.53042 * 109.53929 * 298.63387 * 15 14 12 17 17 C 1.52999 * 109.49971 * 181.31941 * 16 15 14 18 18 C 1.53001 * 109.49491 * 301.38337 * 16 15 14 19 19 C 1.53191 * 109.31430 * 61.36371 * 16 15 14 20 20 N 1.46931 * 109.58735 * 299.11346 * 12 11 10 21 21 C 1.36934 * 120.63155 * 6.63272 * 20 12 11 22 22 H 1.08003 * 119.99455 * 328.41094 * 21 20 12 23 23 C 1.38806 * 120.00537 * 148.41233 * 21 20 12 24 24 N 1.31625 * 120.00025 * 345.29875 * 23 21 20 25 25 Si 1.86798 * 120.00482 * 165.29969 * 23 21 20 26 26 H 1.48503 * 109.46652 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47425 * 119.99687 * 25 23 21 28 28 H 1.48496 * 109.47323 * 240.00258 * 25 23 21 29 29 N 1.31900 * 119.61441 * 0.02562 * 3 2 1 30 30 H 1.08997 * 109.46630 * 59.99804 * 1 2 3 31 31 H 1.08991 * 109.47480 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46904 * 300.00176 * 1 2 3 33 33 H 1.08003 * 120.35277 * 359.97438 * 4 3 2 34 34 H 1.07995 * 120.72436 * 180.02562 * 5 4 3 35 35 H 1.08000 * 120.40414 * 180.02562 * 6 5 4 36 36 H 0.97005 * 120.00451 * 359.97438 * 10 8 7 37 37 H 1.08996 * 109.47395 * 299.99442 * 11 10 8 38 38 H 1.08998 * 109.47321 * 60.00481 * 11 10 8 39 39 H 1.09001 * 109.49396 * 294.37401 * 14 12 11 40 40 H 1.09005 * 109.49756 * 54.43235 * 14 12 11 41 41 H 1.09004 * 109.45946 * 58.65132 * 15 14 12 42 42 H 1.09003 * 109.46193 * 178.62832 * 15 14 12 43 43 H 1.08999 * 109.47322 * 59.99682 * 17 16 15 44 44 H 1.09002 * 109.47173 * 180.02562 * 17 16 15 45 45 H 1.08999 * 109.46744 * 299.99531 * 17 16 15 46 46 H 1.08998 * 109.47431 * 59.99450 * 18 16 15 47 47 H 1.08996 * 109.47212 * 180.02562 * 18 16 15 48 48 H 1.09005 * 109.47009 * 299.99431 * 18 16 15 49 49 H 1.08993 * 109.58795 * 65.15162 * 19 16 15 50 50 H 1.08991 * 109.58958 * 185.43736 * 19 16 15 51 51 H 0.97001 * 120.00142 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4364 1.2722 0.0005 5 6 4.0578 2.5082 0.0011 6 6 3.2668 3.6484 0.0016 7 6 1.8820 3.5136 0.0010 8 6 1.0269 4.7235 0.0022 9 8 1.5357 5.8270 0.0031 10 7 -0.3151 4.6002 0.0021 11 6 -1.1607 5.7966 0.0027 12 6 -2.6330 5.3804 0.0019 13 1 -2.8434 4.7795 0.8866 14 6 -3.5198 6.6296 0.0067 15 6 -4.9849 6.2109 -0.1344 16 6 -5.1832 5.4831 -1.4660 17 6 -6.6547 5.0939 -1.6211 18 6 -4.7746 6.4043 -2.6172 19 6 -4.3154 4.2209 -1.4877 20 7 -2.9234 4.5992 -1.2082 21 6 -1.9159 4.2302 -2.0589 22 1 -1.0502 4.8649 -2.1780 23 6 -2.0072 3.0405 -2.7682 24 7 -2.8972 2.1347 -2.4223 25 14 -0.8669 2.7250 -4.2138 26 1 0.0347 3.8908 -4.3966 27 1 -0.0568 1.5090 -3.9490 28 1 -1.6723 2.5250 -5.4452 29 7 1.3193 2.3102 0.0005 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 4.0240 0.3661 0.0014 34 1 5.1351 2.5841 0.0011 35 1 3.7205 4.6285 0.0016 36 1 -0.7213 3.7192 0.0010 37 1 -0.9508 6.3894 0.8929 38 1 -0.9508 6.3902 -0.8871 39 1 -3.3841 7.1684 0.9445 40 1 -3.2434 7.2753 -0.8269 41 1 -5.2532 5.5458 0.6864 42 1 -5.6200 7.0964 -0.1068 43 1 -7.2720 5.9920 -1.6028 44 1 -6.7954 4.5751 -2.5694 45 1 -6.9450 4.4367 -0.8014 46 1 -3.7260 6.6805 -2.5070 47 1 -4.9164 5.8857 -3.5654 48 1 -5.3909 7.3032 -2.5995 49 1 -4.6647 3.5242 -0.7257 50 1 -4.3785 3.7508 -2.4690 51 1 -2.9613 1.3035 -2.9182 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089717493.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:24:34 Heat of formation + Delta-G solvation = -18.505641 kcal Electronic energy + Delta-G solvation = -32821.041279 eV Core-core repulsion = 28721.392034 eV Total energy + Delta-G solvation = -4099.649245 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.60361 -39.18999 -38.43076 -37.34358 -35.09643 -33.25336 -32.69995 -31.86010 -30.64193 -29.99390 -27.65486 -26.96170 -26.61099 -25.47351 -24.61654 -23.05644 -22.63425 -22.21312 -20.19974 -20.09900 -18.22607 -17.90803 -17.40208 -16.38631 -15.90866 -15.85319 -15.61636 -15.45633 -15.21302 -14.43507 -14.13052 -13.99043 -13.88002 -13.75903 -13.59234 -13.31025 -13.17088 -13.00367 -12.79607 -12.39675 -12.18691 -12.08267 -11.66444 -11.49852 -11.41023 -11.28430 -11.15205 -10.94922 -10.81510 -10.79243 -10.61388 -10.40713 -10.15766 -10.08417 -9.99886 -9.87086 -9.80190 -9.47541 -9.32559 -9.17209 -8.58255 -8.44183 -8.18035 -6.62756 -5.83630 -3.28676 0.85254 1.38402 3.14820 3.25499 3.31696 3.40915 3.44761 3.66985 4.13587 4.35647 4.44443 4.96542 5.09486 5.14054 5.20077 5.30826 5.38449 5.45429 5.49936 5.59181 5.60902 5.63418 5.74963 5.76057 5.86736 6.01728 6.02856 6.10023 6.12668 6.16183 6.19986 6.23557 6.33145 6.36755 6.44080 6.45493 6.47564 6.48234 6.52292 6.65382 6.90339 6.93731 7.01454 7.12195 7.14670 7.36131 7.37736 7.64754 7.81077 7.82648 8.29979 8.41311 8.80480 9.17454 9.78577 10.36852 11.22936 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012225 B = 0.004212 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.802146 B = 6646.051175 C = 7562.828348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.312 6.312 3 C 0.322 3.678 4 C -0.178 4.178 5 C -0.052 4.052 6 C -0.158 4.158 7 C 0.132 3.868 8 C 0.559 3.441 9 O -0.556 6.556 10 N -0.668 5.668 11 C 0.131 3.869 12 C 0.160 3.840 13 H 0.031 0.969 14 C -0.130 4.130 15 C -0.095 4.095 16 C -0.095 4.095 17 C -0.133 4.133 18 C -0.124 4.124 19 C 0.190 3.810 20 N -0.584 5.584 21 C -0.246 4.246 22 H 0.067 0.933 23 C 0.018 3.982 24 N -0.894 5.894 25 Si 0.883 3.117 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.290 1.290 29 N -0.502 5.502 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.425 0.575 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.045 0.955 43 H 0.041 0.959 44 H 0.050 0.950 45 H 0.047 0.953 46 H 0.065 0.935 47 H 0.044 0.956 48 H 0.030 0.970 49 H 0.017 0.983 50 H 0.083 0.917 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.991 0.419 6.054 7.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.218 6.218 3 C 0.140 3.860 4 C -0.199 4.199 5 C -0.077 4.077 6 C -0.180 4.180 7 C -0.005 4.005 8 C 0.342 3.658 9 O -0.436 6.436 10 N -0.318 5.318 11 C 0.007 3.993 12 C 0.053 3.947 13 H 0.049 0.951 14 C -0.169 4.169 15 C -0.133 4.133 16 C -0.097 4.097 17 C -0.191 4.191 18 C -0.181 4.181 19 C 0.064 3.936 20 N -0.307 5.307 21 C -0.375 4.375 22 H 0.085 0.915 23 C -0.182 4.182 24 N -0.538 5.538 25 Si 0.714 3.286 26 H -0.204 1.204 27 H -0.218 1.218 28 H -0.216 1.216 29 N -0.228 5.228 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.078 0.922 33 H 0.160 0.840 34 H 0.163 0.837 35 H 0.166 0.834 36 H 0.265 0.735 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.084 0.916 47 H 0.063 0.937 48 H 0.049 0.951 49 H 0.035 0.965 50 H 0.101 0.899 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.452 0.698 5.980 6.940 hybrid contribution 0.914 -0.651 -0.977 1.488 sum 4.366 0.046 5.003 6.641 Atomic orbital electron populations 1.22951 0.75918 1.02901 1.03892 1.86181 1.23855 1.24126 1.87680 1.19811 0.89283 0.84762 0.92121 1.21221 0.92062 0.99656 1.06942 1.21359 1.00536 0.90948 0.94880 1.21948 0.93236 1.00566 1.02242 1.20974 0.92135 0.90563 0.96870 1.17816 0.82891 0.86987 0.78068 1.90720 1.74382 1.25828 1.52632 1.45918 1.04519 1.12056 1.69274 1.21384 0.89917 0.87087 1.00885 1.20727 0.90705 0.92102 0.91132 0.95139 1.22003 0.95911 0.98425 1.00594 1.21404 0.95713 0.98767 0.97397 1.21243 0.95036 0.98987 0.94392 1.21759 0.96123 1.00033 1.01214 1.21701 1.01572 0.97366 0.97506 1.20757 0.81697 0.89959 1.01168 1.44020 1.03069 1.62264 1.21336 1.19126 1.00109 1.00683 1.17623 0.91532 1.24943 0.98060 0.95198 0.99969 1.70020 1.36970 1.06999 1.39851 0.86510 0.80736 0.77940 0.83443 1.20359 1.21782 1.21638 1.67295 1.40699 0.98104 1.16679 0.90678 0.88917 0.92176 0.84010 0.83733 0.83432 0.73517 0.92455 0.91301 0.93135 0.91591 0.92956 0.93662 0.93981 0.93077 0.93358 0.91560 0.93681 0.95077 0.96502 0.89872 0.93855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.38 101.05 1.05 1.65 16 2 O -0.31 -5.06 10.48 -18.71 -0.20 -5.26 16 3 C 0.32 5.33 7.49 -17.13 -0.13 5.20 16 4 C -0.18 -2.34 10.05 -39.16 -0.39 -2.74 16 5 C -0.05 -0.62 10.16 -39.35 -0.40 -1.02 16 6 C -0.16 -2.36 9.63 -39.05 -0.38 -2.73 16 7 C 0.13 2.39 6.75 -83.02 -0.56 1.83 16 8 C 0.56 11.13 7.81 -12.19 -0.10 11.04 16 9 O -0.56 -11.86 16.32 5.35 0.09 -11.77 16 10 N -0.67 -13.30 3.87 -61.15 -0.24 -13.54 16 11 C 0.13 2.46 4.43 -4.04 -0.02 2.45 16 12 C 0.16 3.02 3.00 -67.59 -0.20 2.81 16 13 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 14 C -0.13 -2.10 5.03 -26.61 -0.13 -2.24 16 15 C -0.10 -1.51 4.71 -26.69 -0.13 -1.64 16 16 C -0.09 -1.66 0.77 -154.39 -0.12 -1.78 16 17 C -0.13 -2.07 8.48 37.16 0.32 -1.76 16 18 C -0.12 -2.18 7.99 37.16 0.30 -1.88 16 19 C 0.19 4.07 3.94 -3.71 -0.01 4.06 16 20 N -0.58 -12.72 2.41 -164.77 -0.40 -13.12 16 21 C -0.25 -5.98 6.99 -15.06 -0.11 -6.08 16 22 H 0.07 1.71 5.89 -52.48 -0.31 1.40 16 23 C 0.02 0.45 4.95 -17.43 -0.09 0.37 16 24 N -0.89 -23.36 11.32 55.49 0.63 -22.73 16 25 Si 0.88 21.37 29.58 -169.99 -5.03 16.35 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 N -0.50 -9.24 8.39 -9.87 -0.08 -9.32 16 30 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 33 H 0.14 1.47 8.06 -52.48 -0.42 1.04 16 34 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.15 2.04 7.63 -52.49 -0.40 1.64 16 36 H 0.43 9.06 6.77 -40.82 -0.28 8.78 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.40 7.38 -51.93 -0.38 1.02 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.11 6.34 -51.93 -0.33 0.78 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.07 1.27 5.98 -51.93 -0.31 0.96 16 47 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.08 2.05 6.27 -51.93 -0.33 1.72 16 51 H 0.25 6.51 8.31 -40.82 -0.34 6.17 16 LS Contribution 400.80 15.07 6.04 6.04 Total: -1.00 -27.76 400.80 -8.51 -36.27 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -8.23 Total: 9.54 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -1.10 Total: 7.54 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -0.09 Total: -58.71 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.11 Total: -17.03 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -27.76 -8.51 -36.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089717493.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.767 kcal (2) G-P(sol) polarization free energy of solvation -27.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds