Wall clock time and date at job start Sat Apr 11 2020 08:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35669 * 117.00393 * 2 1 4 4 C 1.39280 * 119.61596 * 179.97438 * 3 2 1 5 5 C 1.38335 * 119.30545 * 180.02562 * 4 3 2 6 6 C 1.38777 * 118.55595 * 0.02562 * 5 4 3 7 7 C 1.39136 * 119.19041 * 359.97438 * 6 5 4 8 8 C 1.48152 * 119.68808 * 179.97438 * 7 6 5 9 9 O 1.21514 * 120.00217 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99695 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99818 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46832 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.58912 * 59.54154 * 12 11 10 14 14 C 1.53195 * 109.58792 * 179.82969 * 12 11 10 15 15 C 1.53032 * 109.31605 * 174.42262 * 14 12 11 16 16 C 1.53042 * 109.53929 * 298.63387 * 15 14 12 17 17 C 1.52999 * 109.49971 * 181.31941 * 16 15 14 18 18 C 1.53001 * 109.49491 * 301.38337 * 16 15 14 19 19 C 1.53191 * 109.31430 * 61.36371 * 16 15 14 20 20 N 1.46931 * 109.58735 * 299.11346 * 12 11 10 21 21 C 1.36934 * 120.63155 * 6.63272 * 20 12 11 22 22 H 1.08003 * 119.99455 * 328.41094 * 21 20 12 23 23 C 1.38806 * 120.00537 * 148.41233 * 21 20 12 24 24 N 1.31625 * 120.00025 * 345.29875 * 23 21 20 25 25 Si 1.86798 * 120.00482 * 165.29969 * 23 21 20 26 26 H 1.48503 * 109.46652 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47425 * 119.99687 * 25 23 21 28 28 H 1.48496 * 109.47323 * 240.00258 * 25 23 21 29 29 N 1.31900 * 119.61441 * 0.02562 * 3 2 1 30 30 H 1.08997 * 109.46630 * 59.99804 * 1 2 3 31 31 H 1.08991 * 109.47480 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46904 * 300.00176 * 1 2 3 33 33 H 1.08003 * 120.35277 * 359.97438 * 4 3 2 34 34 H 1.07995 * 120.72436 * 180.02562 * 5 4 3 35 35 H 1.08000 * 120.40414 * 180.02562 * 6 5 4 36 36 H 0.97005 * 120.00451 * 359.97438 * 10 8 7 37 37 H 1.08996 * 109.47395 * 299.99442 * 11 10 8 38 38 H 1.08998 * 109.47321 * 60.00481 * 11 10 8 39 39 H 1.09001 * 109.49396 * 294.37401 * 14 12 11 40 40 H 1.09005 * 109.49756 * 54.43235 * 14 12 11 41 41 H 1.09004 * 109.45946 * 58.65132 * 15 14 12 42 42 H 1.09003 * 109.46193 * 178.62832 * 15 14 12 43 43 H 1.08999 * 109.47322 * 59.99682 * 17 16 15 44 44 H 1.09002 * 109.47173 * 180.02562 * 17 16 15 45 45 H 1.08999 * 109.46744 * 299.99531 * 17 16 15 46 46 H 1.08998 * 109.47431 * 59.99450 * 18 16 15 47 47 H 1.08996 * 109.47212 * 180.02562 * 18 16 15 48 48 H 1.09005 * 109.47009 * 299.99431 * 18 16 15 49 49 H 1.08993 * 109.58795 * 65.15162 * 19 16 15 50 50 H 1.08991 * 109.58958 * 185.43736 * 19 16 15 51 51 H 0.97001 * 120.00142 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4364 1.2722 0.0005 5 6 4.0578 2.5082 0.0011 6 6 3.2668 3.6484 0.0016 7 6 1.8820 3.5136 0.0010 8 6 1.0269 4.7235 0.0022 9 8 1.5357 5.8270 0.0031 10 7 -0.3151 4.6002 0.0021 11 6 -1.1607 5.7966 0.0027 12 6 -2.6330 5.3804 0.0019 13 1 -2.8434 4.7795 0.8866 14 6 -3.5198 6.6296 0.0067 15 6 -4.9849 6.2109 -0.1344 16 6 -5.1832 5.4831 -1.4660 17 6 -6.6547 5.0939 -1.6211 18 6 -4.7746 6.4043 -2.6172 19 6 -4.3154 4.2209 -1.4877 20 7 -2.9234 4.5992 -1.2082 21 6 -1.9159 4.2302 -2.0589 22 1 -1.0502 4.8649 -2.1780 23 6 -2.0072 3.0405 -2.7682 24 7 -2.8972 2.1347 -2.4223 25 14 -0.8669 2.7250 -4.2138 26 1 0.0347 3.8908 -4.3966 27 1 -0.0568 1.5090 -3.9490 28 1 -1.6723 2.5250 -5.4452 29 7 1.3193 2.3102 0.0005 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 4.0240 0.3661 0.0014 34 1 5.1351 2.5841 0.0011 35 1 3.7205 4.6285 0.0016 36 1 -0.7213 3.7192 0.0010 37 1 -0.9508 6.3894 0.8929 38 1 -0.9508 6.3902 -0.8871 39 1 -3.3841 7.1684 0.9445 40 1 -3.2434 7.2753 -0.8269 41 1 -5.2532 5.5458 0.6864 42 1 -5.6200 7.0964 -0.1068 43 1 -7.2720 5.9920 -1.6028 44 1 -6.7954 4.5751 -2.5694 45 1 -6.9450 4.4367 -0.8014 46 1 -3.7260 6.6805 -2.5070 47 1 -4.9164 5.8857 -3.5654 48 1 -5.3909 7.3032 -2.5995 49 1 -4.6647 3.5242 -0.7257 50 1 -4.3785 3.7508 -2.4690 51 1 -2.9613 1.3035 -2.9182 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089717493.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:24:32 Heat of formation + Delta-G solvation = -35.435756 kcal Electronic energy + Delta-G solvation = -32821.775424 eV Core-core repulsion = 28721.392034 eV Total energy + Delta-G solvation = -4100.383390 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.86639 -40.68964 -39.91351 -38.62206 -36.64973 -35.02005 -34.05645 -33.24547 -31.87525 -31.73890 -29.08218 -28.25215 -28.00515 -27.30790 -25.95130 -24.51638 -23.91248 -23.70095 -21.71898 -21.60977 -19.61576 -19.43358 -18.77530 -18.05219 -17.33097 -17.06038 -17.01767 -16.87507 -16.71173 -16.18110 -15.78109 -15.42807 -15.34762 -15.14896 -15.01928 -14.73924 -14.58988 -14.30674 -14.20481 -13.87073 -13.77290 -13.21485 -13.14358 -13.02663 -12.90630 -12.75713 -12.71570 -12.52921 -12.50271 -12.24518 -12.18714 -12.12427 -11.88416 -11.68731 -11.45821 -11.25355 -11.00520 -10.97332 -10.87087 -10.57541 -10.47986 -9.93361 -9.57659 -8.49098 -7.80996 -5.24856 -0.37261 0.25811 1.30873 1.37967 1.42422 1.74272 2.06489 2.25013 2.47191 2.83383 3.05522 3.34785 3.59986 3.88740 3.95798 3.99479 4.03655 4.04997 4.21158 4.25210 4.32912 4.39023 4.42751 4.43584 4.49767 4.52112 4.67558 4.73479 4.80745 4.87679 4.93392 4.94427 4.97079 5.06428 5.09464 5.10935 5.14939 5.16911 5.26850 5.36371 5.40714 5.47664 5.53973 5.58488 5.64390 5.73237 5.83345 5.89889 6.11489 6.46362 6.50159 6.78587 7.21524 7.24396 7.92039 8.45402 9.22797 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012225 B = 0.004212 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.802146 B = 6646.051175 C = 7562.828348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.313 6.313 3 C 0.292 3.708 4 C -0.161 4.161 5 C -0.034 4.034 6 C -0.152 4.152 7 C 0.094 3.906 8 C 0.555 3.445 9 O -0.577 6.577 10 N -0.674 5.674 11 C 0.135 3.865 12 C 0.160 3.840 13 H 0.027 0.973 14 C -0.123 4.123 15 C -0.091 4.091 16 C -0.092 4.092 17 C -0.128 4.128 18 C -0.117 4.117 19 C 0.200 3.800 20 N -0.592 5.592 21 C -0.223 4.223 22 H 0.053 0.947 23 C -0.017 4.017 24 N -0.913 5.913 25 Si 0.919 3.081 26 H -0.286 1.286 27 H -0.299 1.299 28 H -0.292 1.292 29 N -0.531 5.531 30 H 0.035 0.965 31 H 0.122 0.878 32 H 0.054 0.946 33 H 0.178 0.822 34 H 0.198 0.802 35 H 0.157 0.843 36 H 0.417 0.583 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.041 0.959 45 H 0.050 0.950 46 H 0.046 0.954 47 H 0.028 0.972 48 H 0.060 0.940 49 H -0.006 1.006 50 H 0.046 0.954 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.979 1.306 7.230 8.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.220 6.220 3 C 0.110 3.890 4 C -0.181 4.181 5 C -0.058 4.058 6 C -0.174 4.174 7 C -0.042 4.042 8 C 0.340 3.660 9 O -0.458 6.458 10 N -0.323 5.323 11 C 0.011 3.989 12 C 0.054 3.946 13 H 0.044 0.956 14 C -0.162 4.162 15 C -0.128 4.128 16 C -0.093 4.093 17 C -0.186 4.186 18 C -0.175 4.175 19 C 0.074 3.926 20 N -0.316 5.316 21 C -0.354 4.354 22 H 0.070 0.930 23 C -0.214 4.214 24 N -0.559 5.559 25 Si 0.751 3.249 26 H -0.211 1.211 27 H -0.227 1.227 28 H -0.219 1.219 29 N -0.258 5.258 30 H 0.054 0.946 31 H 0.140 0.860 32 H 0.073 0.927 33 H 0.195 0.805 34 H 0.215 0.785 35 H 0.175 0.825 36 H 0.255 0.745 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.060 0.940 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.047 0.953 48 H 0.079 0.921 49 H 0.012 0.988 50 H 0.065 0.935 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.434 1.620 7.163 8.578 hybrid contribution 0.706 -0.928 -1.302 1.748 sum 5.140 0.692 5.861 7.826 Atomic orbital electron populations 1.22836 0.76199 1.04063 1.01616 1.86176 1.23549 1.24275 1.88012 1.20334 0.90794 0.84285 0.93567 1.21723 0.90599 1.01679 1.04117 1.21918 1.02668 0.89073 0.92190 1.22219 0.92061 1.02314 1.00821 1.20845 0.93239 0.89758 1.00323 1.18211 0.82915 0.87677 0.77184 1.90681 1.74648 1.26759 1.53754 1.45981 1.04976 1.11784 1.69512 1.21395 0.89817 0.86804 1.00837 1.20871 0.91450 0.92878 0.89388 0.95563 1.21941 0.95454 0.96798 1.02023 1.21385 0.95808 0.99656 0.95967 1.21147 0.95438 0.96960 0.95768 1.21705 0.94833 1.01212 1.00853 1.21621 1.00909 0.98278 0.96646 1.20533 0.82288 0.91573 0.98186 1.44142 1.02818 1.62409 1.22250 1.19006 0.99780 0.99604 1.17034 0.92978 1.25218 0.99087 0.95649 1.01450 1.70089 1.38121 1.07121 1.40551 0.85954 0.79645 0.76931 0.82380 1.21147 1.22718 1.21946 1.67108 1.42175 0.98802 1.17672 0.94644 0.85998 0.92689 0.80455 0.78522 0.82503 0.74527 0.90498 0.93146 0.90190 0.91956 0.92849 0.90720 0.91269 0.94030 0.93108 0.93496 0.95277 0.92138 0.98843 0.93536 0.94503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.57 10.38 113.37 1.18 2.75 16 2 O -0.31 -10.14 10.48 -89.85 -0.94 -11.08 16 3 C 0.29 9.53 7.49 84.93 0.64 10.17 16 4 C -0.16 -3.75 10.05 22.54 0.23 -3.52 16 5 C -0.03 -0.68 10.16 22.42 0.23 -0.45 16 6 C -0.15 -4.29 9.63 22.61 0.22 -4.07 16 7 C 0.09 3.46 6.75 41.84 0.28 3.74 16 8 C 0.55 22.77 7.81 86.88 0.68 23.44 16 9 O -0.58 -25.02 16.32 -3.76 -0.06 -25.08 16 10 N -0.67 -27.91 3.87 -465.68 -1.80 -29.72 16 11 C 0.14 5.15 4.43 86.38 0.38 5.53 16 12 C 0.16 6.04 3.00 44.98 0.14 6.17 16 13 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 14 C -0.12 -3.74 5.03 30.67 0.15 -3.59 16 15 C -0.09 -2.64 4.71 30.62 0.14 -2.50 16 16 C -0.09 -3.11 0.77 -52.10 -0.04 -3.15 16 17 C -0.13 -3.76 8.48 71.98 0.61 -3.15 16 18 C -0.12 -3.99 7.99 71.98 0.57 -3.42 16 19 C 0.20 8.82 3.94 86.36 0.34 9.16 16 20 N -0.59 -26.60 2.41 -675.22 -1.63 -28.23 16 21 C -0.22 -11.33 6.99 84.03 0.59 -10.74 16 22 H 0.05 2.80 5.89 -2.91 -0.02 2.79 16 23 C -0.02 -0.90 4.95 84.86 0.42 -0.48 16 24 N -0.91 -50.11 11.32 21.65 0.25 -49.87 16 25 Si 0.92 45.75 29.58 68.60 2.03 47.78 16 26 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 27 H -0.30 -15.20 7.11 99.48 0.71 -14.49 16 28 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 29 N -0.53 -20.08 8.39 -298.20 -2.50 -22.58 16 30 H 0.03 1.43 8.10 -2.39 -0.02 1.41 16 31 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 32 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 33 H 0.18 2.86 8.06 -2.91 -0.02 2.83 16 34 H 0.20 1.95 8.06 -2.91 -0.02 1.93 16 35 H 0.16 4.06 7.63 -2.91 -0.02 4.04 16 36 H 0.42 18.75 6.77 -92.70 -0.63 18.12 16 37 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.05 2.10 7.38 -2.39 -0.02 2.09 16 39 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.06 1.98 6.34 -2.38 -0.02 1.96 16 41 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.05 1.77 5.98 -2.39 -0.01 1.75 16 47 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 49 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 50 H 0.05 2.39 6.27 -2.39 -0.01 2.38 16 51 H 0.25 13.37 8.31 -92.71 -0.77 12.60 16 Total: -1.00 -64.80 400.80 2.40 -62.41 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.30 Total: 30.47 kcal Atomic # 6 Polarization: 19.13 SS G_CDS: 6.75 Total: 25.89 kcal Atomic # 7 Polarization: -124.71 SS G_CDS: -5.68 Total: -130.39 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -1.00 Total: -36.16 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -64.80 2.40 -62.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089717493.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.970 kcal (2) G-P(sol) polarization free energy of solvation -64.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds