Wall clock time and date at job start Sat Apr 11 2020 08:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.49965 * 2 1 4 4 C 1.53040 * 109.49516 * 239.90081 * 2 1 3 5 5 C 1.53036 * 109.54032 * 301.41117 * 4 2 1 6 6 C 1.53189 * 109.31440 * 298.63861 * 5 4 2 7 7 H 1.09000 * 109.58395 * 294.84570 * 6 5 4 8 8 C 1.53006 * 109.70208 * 174.49036 * 6 5 4 9 9 N 1.46498 * 109.46732 * 180.33204 * 8 6 5 10 10 C 1.34777 * 120.00101 * 180.02562 * 9 8 6 11 11 O 1.21612 * 119.99832 * 359.97438 * 10 9 8 12 12 C 1.47397 * 120.00275 * 180.02562 * 10 9 8 13 13 C 1.47100 * 128.56683 * 359.66850 * 12 10 9 14 14 N 1.30011 * 105.33047 * 179.89322 * 13 12 10 15 15 O 1.20660 * 112.30139 * 0.40177 * 14 13 12 16 16 C 1.33491 * 113.15728 * 359.72686 * 15 14 13 17 17 C 1.50698 * 126.83020 * 179.97438 * 16 15 14 18 18 C 1.52999 * 117.49601 * 8.75095 * 17 16 15 19 19 C 1.52994 * 117.49944 * 300.09226 * 17 16 15 20 20 N 1.46918 * 108.77625 * 54.63178 * 6 5 4 21 21 C 1.36945 * 120.62929 * 126.37079 * 20 6 5 22 22 H 1.07992 * 120.00363 * 328.29279 * 21 20 6 23 23 C 1.38814 * 119.99919 * 148.28738 * 21 20 6 24 24 N 1.31624 * 120.00038 * 345.47591 * 23 21 20 25 25 Si 1.86794 * 119.99990 * 165.46887 * 23 21 20 26 26 H 1.48499 * 109.46957 * 90.00314 * 25 23 21 27 27 H 1.48505 * 109.47181 * 209.99856 * 25 23 21 28 28 H 1.48498 * 109.47474 * 330.00198 * 25 23 21 29 29 C 1.46919 * 118.74138 * 306.39233 * 20 6 5 30 30 H 1.09001 * 109.47090 * 299.93412 * 1 2 3 31 31 H 1.08993 * 109.47283 * 59.93855 * 1 2 3 32 32 H 1.09001 * 109.47107 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47448 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46920 * 300.06931 * 3 2 1 35 35 H 1.08996 * 109.47255 * 60.06091 * 3 2 1 36 36 H 1.09003 * 109.46279 * 61.43752 * 4 2 1 37 37 H 1.09001 * 109.46087 * 181.39084 * 4 2 1 38 38 H 1.09001 * 109.50215 * 178.67871 * 5 4 2 39 39 H 1.09004 * 109.49582 * 58.58971 * 5 4 2 40 40 H 1.08993 * 109.47335 * 300.33203 * 8 6 5 41 41 H 1.09002 * 109.46986 * 60.33889 * 8 6 5 42 42 H 0.97003 * 120.00839 * 359.97438 * 9 8 6 43 43 H 1.08004 * 127.33274 * 0.02562 * 13 12 10 44 44 H 1.08996 * 115.54833 * 154.41745 * 17 16 15 45 45 H 1.09002 * 117.49944 * 359.97438 * 18 17 16 46 46 H 1.09010 * 117.49860 * 145.01667 * 18 17 16 47 47 H 1.09003 * 117.49955 * 214.97821 * 19 17 16 48 48 H 1.09001 * 117.50164 * 359.97438 * 19 17 16 49 49 H 0.96994 * 119.99887 * 180.02562 * 24 23 21 50 50 H 1.08997 * 109.59196 * 173.39619 * 29 20 6 51 51 H 1.09007 * 109.58740 * 293.67815 * 29 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 6 2.0407 -0.7235 -1.2481 5 6 1.5030 -2.1562 -1.2653 6 6 2.0140 -2.9040 -0.0299 7 1 3.0979 -3.0043 -0.0859 8 6 1.3731 -4.2919 0.0347 9 7 1.8591 -4.9993 1.2219 10 6 1.4276 -6.2486 1.4856 11 8 0.6345 -6.7884 0.7383 12 6 1.9161 -6.9602 2.6805 13 6 2.8704 -6.4950 3.6987 14 7 2.9745 -7.4758 4.5458 15 8 2.2908 -8.4211 4.2380 16 6 1.5973 -8.2239 3.1146 17 6 0.6530 -9.1947 2.4536 18 6 0.2949 -10.4672 3.2238 19 6 1.2230 -10.5430 2.0090 20 7 1.6516 -2.1378 1.1702 21 6 0.9631 -2.7306 2.1949 22 1 0.2581 -3.5213 1.9855 23 6 1.1717 -2.3151 3.5029 24 7 2.2154 -1.5694 3.7980 25 14 -0.0289 -2.8141 4.8440 26 1 0.4074 -4.0998 5.4456 27 1 -0.0640 -1.7635 5.8930 28 1 -1.3846 -2.9757 4.2599 29 6 2.0413 -0.7235 1.2498 30 1 -0.3633 0.5128 0.8906 31 1 -0.3633 0.5147 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1307 1.4417 -0.0005 34 1 1.6766 1.9566 -0.8894 35 1 1.6785 1.9559 0.8905 36 1 1.6987 -0.1965 -2.1389 37 1 3.1305 -0.7448 -1.2351 38 1 1.8479 -2.6635 -2.1663 39 1 0.4132 -2.1359 -1.2534 40 1 0.2894 -4.1894 0.0910 41 1 1.6388 -4.8567 -0.8589 42 1 2.4920 -4.5690 1.8179 43 1 3.3751 -5.5409 3.7360 44 1 -0.1230 -8.7469 1.8328 45 1 0.7427 -10.6025 4.2084 46 1 -0.7167 -10.8570 3.1094 47 1 0.8218 -10.9826 1.0958 48 1 2.2812 -10.7278 2.1941 49 1 2.3613 -1.2794 4.7120 50 1 1.6008 -0.2725 2.1389 51 1 3.1274 -0.6461 1.3007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089718064.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:24:42 Heat of formation + Delta-G solvation = 51.743911 kcal Electronic energy + Delta-G solvation = -32387.107452 eV Core-core repulsion = 28290.504456 eV Total energy + Delta-G solvation = -4096.602996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -46.02435 -40.81970 -39.86833 -38.30880 -36.60556 -35.02693 -34.82515 -33.55723 -32.63495 -31.74055 -29.08877 -28.00039 -27.31006 -26.18532 -25.16180 -24.45681 -23.74703 -23.29292 -22.06106 -21.72041 -21.10245 -19.45468 -19.07506 -18.81944 -18.12480 -17.53690 -17.24113 -16.90656 -16.40382 -16.11892 -15.73722 -15.64247 -15.30191 -15.23007 -14.82793 -14.72547 -14.68558 -14.38693 -13.93125 -13.76103 -13.36001 -13.12974 -13.02476 -12.85636 -12.74981 -12.70509 -12.51473 -12.48964 -12.44256 -12.24671 -12.17382 -12.10784 -11.87522 -11.62149 -11.47878 -11.46064 -11.24689 -11.10375 -10.91056 -10.83669 -10.49612 -10.30425 -9.80489 -8.49888 -7.82134 -5.26967 -0.03377 0.69376 1.34485 1.42409 1.45703 1.67378 2.16257 2.37222 2.47625 2.84657 3.19636 3.21802 3.33329 3.46572 3.61673 3.79821 3.99882 4.01053 4.05948 4.08791 4.20458 4.22831 4.34702 4.45023 4.55315 4.55659 4.70489 4.72453 4.74427 4.79767 4.88589 4.95088 4.95514 4.97694 5.07606 5.11022 5.12617 5.16428 5.18899 5.20750 5.27810 5.41646 5.49690 5.55094 5.59760 5.65814 5.74014 5.83634 5.90699 6.46625 6.63777 7.06849 7.21903 7.24690 7.91919 8.45297 9.21362 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013812 B = 0.003621 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.776641 B = 7730.169219 C = 8848.897759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.092 4.092 3 C -0.129 4.129 4 C -0.091 4.091 5 C -0.124 4.124 6 C 0.160 3.840 7 H 0.031 0.969 8 C 0.141 3.859 9 N -0.684 5.684 10 C 0.591 3.409 11 O -0.574 6.574 12 C -0.272 4.272 13 C 0.031 3.969 14 N -0.374 5.374 15 O 0.092 5.908 16 C 0.080 3.920 17 C -0.116 4.116 18 C -0.150 4.150 19 C -0.140 4.140 20 N -0.594 5.594 21 C -0.224 4.224 22 H 0.059 0.941 23 C -0.023 4.023 24 N -0.919 5.919 25 Si 0.921 3.079 26 H -0.294 1.294 27 H -0.297 1.297 28 H -0.283 1.283 29 C 0.197 3.803 30 H 0.027 0.973 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.050 0.950 41 H 0.077 0.923 42 H 0.411 0.589 43 H 0.208 0.792 44 H 0.139 0.861 45 H 0.106 0.894 46 H 0.129 0.871 47 H 0.127 0.873 48 H 0.102 0.898 49 H 0.246 0.754 50 H 0.045 0.955 51 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.172 -8.874 -8.272 12.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.093 4.093 3 C -0.187 4.187 4 C -0.129 4.129 5 C -0.163 4.163 6 C 0.054 3.946 7 H 0.049 0.951 8 C 0.017 3.983 9 N -0.333 5.333 10 C 0.378 3.622 11 O -0.457 6.457 12 C -0.280 4.280 13 C -0.151 4.151 14 N -0.080 5.080 15 O 0.034 5.966 16 C 0.015 3.985 17 C -0.135 4.135 18 C -0.187 4.187 19 C -0.177 4.177 20 N -0.318 5.318 21 C -0.355 4.355 22 H 0.077 0.923 23 C -0.220 4.220 24 N -0.565 5.565 25 Si 0.753 3.247 26 H -0.222 1.222 27 H -0.223 1.223 28 H -0.209 1.209 29 C 0.071 3.929 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.096 0.904 42 H 0.248 0.752 43 H 0.224 0.776 44 H 0.157 0.843 45 H 0.124 0.876 46 H 0.147 0.853 47 H 0.145 0.855 48 H 0.120 0.880 49 H 0.056 0.944 50 H 0.064 0.936 51 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges 0.018 -9.370 -7.513 12.010 hybrid contribution -0.478 0.978 1.217 1.632 sum -0.460 -8.393 -6.296 10.502 Atomic orbital electron populations 1.21625 0.95007 1.01059 0.99795 1.21146 0.95844 0.95386 0.96963 1.21710 1.00528 0.95116 1.01314 1.21387 0.99666 0.95039 0.96789 1.21943 1.01027 0.96202 0.97119 1.20888 0.96014 0.89332 0.88373 0.95136 1.21324 0.98463 0.91853 0.86638 1.45832 1.46205 1.13578 1.27659 1.16854 0.80711 0.81506 0.83122 1.90686 1.36390 1.68373 1.50231 1.22094 1.07047 0.97075 1.01748 1.26614 0.98060 1.00223 0.90213 1.73603 1.14194 0.97615 1.22629 1.84487 1.43165 1.34353 1.34612 1.24168 0.93219 0.94788 0.86304 1.20753 0.99870 0.87795 1.05072 1.23276 1.02591 0.95669 0.97117 1.23227 1.00488 0.93663 1.00348 1.44163 1.65330 1.06197 1.16099 1.19077 1.14655 1.16616 0.85124 0.92334 1.25295 0.97294 1.01256 0.98134 1.70082 1.27445 1.40941 1.18017 0.85999 0.80684 0.76891 0.81173 1.22192 1.22347 1.20926 1.20560 0.94385 0.83345 0.94582 0.95345 0.92203 0.93365 0.93089 0.91325 0.94099 0.90855 0.92791 0.90129 0.92010 0.93133 0.90447 0.75201 0.77573 0.84330 0.87558 0.85318 0.85459 0.88003 0.94432 0.93612 0.98670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.90 7.99 71.98 0.57 -3.32 16 2 C -0.09 -3.03 0.77 -52.10 -0.04 -3.07 16 3 C -0.13 -3.70 8.48 71.98 0.61 -3.09 16 4 C -0.09 -2.56 4.71 30.62 0.14 -2.41 16 5 C -0.12 -3.55 5.04 30.67 0.15 -3.40 16 6 C 0.16 5.61 3.00 44.98 0.14 5.75 16 7 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 8 C 0.14 4.91 4.44 86.38 0.38 5.30 16 9 N -0.68 -25.42 3.86 -466.39 -1.80 -27.22 16 10 C 0.59 22.35 7.81 86.65 0.68 23.03 16 11 O -0.57 -23.13 15.33 -4.07 -0.06 -23.19 16 12 C -0.27 -9.58 6.47 -18.74 -0.12 -9.70 16 13 C 0.03 1.08 11.95 87.29 1.04 2.13 16 14 N -0.37 -12.86 12.01 -54.20 -0.65 -13.51 16 15 O 0.09 2.87 10.86 77.00 0.84 3.71 16 16 C 0.08 2.45 7.00 25.48 0.18 2.63 16 17 C -0.12 -2.82 5.74 -11.54 -0.07 -2.89 16 18 C -0.15 -2.48 10.19 30.62 0.31 -2.17 16 19 C -0.14 -2.39 10.24 30.62 0.31 -2.08 16 20 N -0.59 -25.41 2.40 -675.25 -1.62 -27.03 16 21 C -0.22 -10.76 6.94 84.03 0.58 -10.18 16 22 H 0.06 2.94 5.90 -2.91 -0.02 2.92 16 23 C -0.02 -1.18 4.95 84.86 0.42 -0.76 16 24 N -0.92 -49.57 11.32 21.65 0.25 -49.33 16 25 Si 0.92 44.22 29.58 68.60 2.03 46.25 16 26 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 27 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 28 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 29 C 0.20 8.45 3.94 86.36 0.34 8.79 16 30 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 1.76 5.97 -2.39 -0.01 1.74 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.06 1.87 6.33 -2.39 -0.02 1.85 16 40 H 0.05 1.95 7.40 -2.39 -0.02 1.94 16 41 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.41 16.07 6.77 -92.71 -0.63 15.45 16 43 H 0.21 6.84 7.88 -2.91 -0.02 6.82 16 44 H 0.14 3.80 6.96 -2.39 -0.02 3.79 16 45 H 0.11 1.73 8.02 -2.39 -0.02 1.71 16 46 H 0.13 1.58 8.14 -2.38 -0.02 1.56 16 47 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.25 13.31 8.31 -92.71 -0.77 12.54 16 50 H 0.05 2.31 6.27 -2.39 -0.01 2.29 16 51 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 Total: -1.00 -60.04 400.13 4.93 -55.11 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: 0.31 Total: 30.68 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 5.64 Total: 4.54 kcal Atomic # 7 Polarization: -113.26 SS G_CDS: -3.83 Total: -117.09 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: 0.77 Total: -19.48 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -60.04 4.93 -55.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089718064.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.850 kcal (2) G-P(sol) polarization free energy of solvation -60.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds