Wall clock time and date at job start Sat Apr 11 2020 08:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36772 * 125.80302 * 2 1 4 4 C 1.47261 * 126.93967 * 359.97438 * 3 2 1 5 5 O 1.21627 * 120.00048 * 39.31592 * 4 3 2 6 6 N 1.34775 * 119.99941 * 219.30881 * 4 3 2 7 7 C 1.46931 * 120.62830 * 5.11124 * 6 4 3 8 8 C 1.53619 * 108.54412 * 126.36932 * 7 6 4 9 9 C 1.53043 * 109.24175 * 54.85636 * 8 7 6 10 10 O 1.42899 * 109.46171 * 178.49413 * 9 8 7 11 11 C 1.42895 * 113.99823 * 270.06777 * 10 9 8 12 12 C 1.53943 * 113.74209 * 248.73804 * 11 10 9 13 13 N 1.47811 * 86.03976 * 222.08335 * 12 11 10 14 14 C 1.36939 * 134.45897 * 204.64248 * 13 12 11 15 15 H 1.08004 * 119.99929 * 179.86911 * 14 13 12 16 16 C 1.38809 * 119.99799 * 359.86721 * 14 13 12 17 17 N 1.31614 * 120.00351 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99782 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47053 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47009 * 120.00178 * 18 16 14 21 21 H 1.48500 * 109.46945 * 240.00004 * 18 16 14 22 22 C 1.47586 * 91.05009 * 24.54944 * 13 12 11 23 23 C 1.53046 * 109.53600 * 298.51089 * 9 8 7 24 24 C 1.46927 * 120.63309 * 185.39420 * 6 4 3 25 25 C 1.46682 * 106.11359 * 180.24366 * 3 2 1 26 26 C 1.34482 * 106.33414 * 359.74266 * 25 3 2 27 27 N 1.34660 * 125.79799 * 179.79552 * 2 1 3 28 28 C 1.46492 * 124.85218 * 0.02562 * 27 2 1 29 29 H 1.09006 * 109.47240 * 270.22790 * 1 2 3 30 30 H 1.09005 * 109.46874 * 30.22443 * 1 2 3 31 31 H 1.09001 * 109.47131 * 150.21989 * 1 2 3 32 32 H 1.09006 * 109.58623 * 246.19850 * 7 6 4 33 33 H 1.08995 * 109.58981 * 6.62675 * 7 6 4 34 34 H 1.09003 * 109.63729 * 294.86597 * 8 7 6 35 35 H 1.09002 * 109.43636 * 174.72509 * 8 7 6 36 36 H 1.08995 * 109.44977 * 58.52517 * 9 8 7 37 37 H 1.08998 * 112.94930 * 20.33126 * 11 10 9 38 38 H 1.09001 * 113.77388 * 336.34934 * 12 11 10 39 39 H 1.09001 * 113.77164 * 107.74392 * 12 11 10 40 40 H 0.97004 * 120.00196 * 179.97438 * 17 16 14 41 41 H 1.09001 * 113.76864 * 221.15015 * 22 13 12 42 42 H 1.08998 * 113.76549 * 89.75467 * 22 13 12 43 43 H 1.09000 * 109.50105 * 301.41423 * 23 9 8 44 44 H 1.08999 * 109.52377 * 181.33565 * 23 9 8 45 45 H 1.08994 * 109.58566 * 353.36883 * 24 6 4 46 46 H 1.08998 * 109.59046 * 113.65756 * 24 6 4 47 47 H 1.08006 * 126.83353 * 179.74904 * 25 3 2 48 48 H 1.08002 * 125.57583 * 179.97438 * 26 25 3 49 49 H 1.08999 * 109.47527 * 269.71929 * 28 27 2 50 50 H 1.09002 * 109.47381 * 149.71710 * 28 27 2 51 51 H 1.09007 * 109.47138 * 29.71976 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3072 1.1093 0.0000 4 6 1.8703 2.5156 -0.0005 5 8 0.9114 2.8548 0.6664 6 7 2.5331 3.4268 -0.7399 7 6 3.6220 3.0147 -1.6362 8 6 3.3270 3.5544 -3.0438 9 6 3.1137 5.0680 -2.9692 10 8 2.8735 5.5802 -4.2815 11 6 4.0576 5.9757 -4.9768 12 6 4.1740 7.4961 -5.1875 13 7 4.6426 7.1680 -6.5504 14 6 5.4180 7.8102 -7.4786 15 1 5.6213 7.3412 -8.4300 16 6 5.9427 9.0640 -7.1967 17 7 5.6946 9.6358 -6.0375 18 14 7.0011 9.9398 -8.4626 19 1 7.1278 9.0908 -9.6744 20 1 6.3678 11.2322 -8.8283 21 1 8.3484 10.1927 -7.8916 22 6 3.9416 5.8700 -6.5083 23 6 1.9093 5.3717 -2.0751 24 6 2.1846 4.8520 -0.6606 25 6 3.6882 0.6151 -0.0060 26 6 3.6095 -0.7274 -0.0033 27 7 2.2947 -1.0922 0.0039 28 6 1.8093 -2.4744 0.0083 29 1 -0.3634 0.0041 1.0277 30 1 -0.3633 0.8880 -0.5173 31 1 -0.3633 -0.8920 -0.5104 32 1 4.5663 3.4231 -1.2758 33 1 3.6795 1.9267 -1.6651 34 1 2.4283 3.0793 -3.4373 35 1 4.1704 3.3377 -3.6995 36 1 4.0035 5.5398 -2.5525 37 1 4.9606 5.5182 -4.5725 38 1 3.2170 8.0174 -5.1656 39 1 4.9319 7.9695 -4.5632 40 1 6.0616 10.5119 -5.8403 41 1 4.5142 5.0473 -6.9366 42 1 2.9161 5.9125 -6.8752 43 1 1.0240 4.8795 -2.4776 44 1 1.7431 6.4484 -2.0411 45 1 1.2934 4.9765 -0.0456 46 1 3.0130 5.4068 -0.2200 47 1 4.5891 1.2108 -0.0114 48 1 4.4497 -1.4061 -0.0066 49 1 1.6933 -2.8155 1.0370 50 1 2.5264 -3.1130 -0.5076 51 1 0.8470 -2.5232 -0.5014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093570524.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:25:22 Heat of formation + Delta-G solvation = 31.970921 kcal Electronic energy + Delta-G solvation = -30666.888476 eV Core-core repulsion = 26569.428059 eV Total energy + Delta-G solvation = -4097.460417 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.71217 -39.85890 -38.55376 -37.14367 -35.32778 -33.37527 -32.14302 -31.96038 -31.37159 -31.02390 -27.52873 -27.09966 -26.66358 -24.83924 -24.68582 -23.42198 -22.85232 -22.01571 -20.74123 -20.01054 -19.29984 -18.47435 -17.51087 -16.88926 -16.58472 -16.15501 -15.89271 -15.82089 -15.10284 -14.97376 -14.43085 -14.42047 -14.26593 -13.84922 -13.73268 -13.58772 -13.49800 -13.19159 -13.06258 -12.93390 -12.74880 -12.62501 -12.49478 -12.22865 -11.92484 -11.84582 -11.75395 -11.65601 -11.26936 -11.13250 -11.07069 -10.87583 -10.63355 -10.39173 -10.17104 -9.94554 -9.86840 -9.51912 -8.85862 -8.78676 -8.71685 -8.62631 -8.39254 -6.87561 -5.75965 -3.08788 1.63540 2.15900 2.44442 2.99648 3.26115 3.39560 3.44441 3.47503 4.05095 4.28050 4.41644 4.49857 4.55273 4.62703 4.70535 4.78913 4.84924 4.97054 5.01483 5.07577 5.22360 5.24940 5.26374 5.27554 5.33114 5.47383 5.48834 5.58216 5.60916 5.62183 5.67071 5.70526 5.77959 5.79116 5.81991 5.93223 6.02867 6.19628 6.31634 6.44790 6.47727 6.55498 6.67035 6.69302 6.77509 6.91685 7.16111 7.26599 7.41797 7.55395 7.92962 8.00303 8.23174 9.05243 9.71093 10.60526 11.41331 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022624 B = 0.001944 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.308946 B =14400.453908 C =14931.024991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.093 3.907 3 C -0.229 4.229 4 C 0.595 3.405 5 O -0.551 6.551 6 N -0.606 5.606 7 C 0.105 3.895 8 C -0.155 4.155 9 C 0.091 3.909 10 O -0.373 6.373 11 C 0.035 3.965 12 C 0.149 3.851 13 N -0.609 5.609 14 C -0.220 4.220 15 H 0.082 0.918 16 C -0.009 4.009 17 N -0.920 5.920 18 Si 0.913 3.087 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.121 3.879 23 C -0.129 4.129 24 C 0.115 3.885 25 C -0.167 4.167 26 C -0.017 4.017 27 N -0.446 5.446 28 C 0.068 3.932 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.072 0.928 40 H 0.253 0.747 41 H 0.045 0.955 42 H 0.042 0.958 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.096 0.904 46 H 0.069 0.931 47 H 0.148 0.852 48 H 0.167 0.833 49 H 0.075 0.925 50 H 0.086 0.914 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.801 -25.181 15.455 30.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.023 4.023 3 C -0.239 4.239 4 C 0.385 3.615 5 O -0.430 6.430 6 N -0.339 5.339 7 C -0.018 4.018 8 C -0.194 4.194 9 C 0.033 3.967 10 O -0.291 6.291 11 C -0.023 4.023 12 C 0.023 3.977 13 N -0.338 5.338 14 C -0.348 4.348 15 H 0.100 0.900 16 C -0.206 4.206 17 N -0.567 5.567 18 Si 0.744 3.256 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.217 1.217 22 C -0.005 4.005 23 C -0.168 4.168 24 C -0.007 4.007 25 C -0.191 4.191 26 C -0.143 4.143 27 N -0.123 5.123 28 C -0.074 4.074 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.052 0.948 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.114 0.886 46 H 0.087 0.913 47 H 0.165 0.835 48 H 0.185 0.815 49 H 0.093 0.907 50 H 0.105 0.895 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.391 -25.075 15.602 30.443 hybrid contribution 1.011 0.528 -0.732 1.355 sum -6.380 -24.547 14.870 29.400 Atomic orbital electron populations 1.20422 0.87341 1.03289 1.03427 1.20198 0.93570 0.85193 1.03316 1.20056 0.93495 0.91829 1.18496 1.17427 0.81483 0.84157 0.78421 1.90747 1.27783 1.80924 1.43519 1.47955 1.35928 1.07262 1.42768 1.22068 0.89218 1.01694 0.88814 1.22541 1.03122 0.97264 0.96437 1.21976 0.97626 0.92333 0.84785 1.87953 1.32240 1.82130 1.26811 1.24994 0.86422 0.98331 0.92600 1.22748 0.97484 0.90717 0.86718 1.45708 1.55537 1.16817 1.15724 1.19039 1.21533 0.98856 0.95335 0.90048 1.24815 1.01080 0.97151 0.97551 1.69839 1.48605 1.16467 1.21839 0.86022 0.79753 0.79524 0.80320 1.20417 1.21709 1.21681 1.22727 0.95971 0.89872 0.91933 1.21966 0.98642 1.02394 0.93760 1.21598 1.02142 0.79853 0.97113 1.22031 0.95623 0.93381 1.08081 1.21707 0.85363 0.96225 1.10978 1.43495 1.06000 1.06042 1.56727 1.22095 1.01748 0.80062 1.03509 0.90176 0.89584 0.91760 0.91434 0.88197 0.90913 0.90474 0.92099 0.90256 0.94831 0.90969 0.93655 0.93691 0.94054 0.90912 0.89779 0.88590 0.91290 0.83476 0.81543 0.90686 0.89543 0.89650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 9.51 36.01 0.34 -0.37 16 2 C 0.09 0.91 6.89 -81.88 -0.56 0.35 16 3 C -0.23 -2.62 5.35 -103.35 -0.55 -3.18 16 4 C 0.60 8.04 7.32 -12.59 -0.09 7.94 16 5 O -0.55 -8.95 15.77 5.25 0.08 -8.87 16 6 N -0.61 -7.31 2.97 -173.83 -0.52 -7.83 16 7 C 0.10 1.08 5.57 -3.49 -0.02 1.06 16 8 C -0.16 -1.85 5.71 -26.39 -0.15 -2.00 16 9 C 0.09 1.28 2.45 -26.69 -0.07 1.21 16 10 O -0.37 -6.66 10.01 -35.23 -0.35 -7.01 16 11 C 0.04 0.69 4.29 -25.80 -0.11 0.58 16 12 C 0.15 3.66 7.36 -2.84 -0.02 3.64 16 13 N -0.61 -16.21 3.70 -177.95 -0.66 -16.87 16 14 C -0.22 -6.31 10.70 -15.06 -0.16 -6.47 16 15 H 0.08 2.24 7.83 -52.48 -0.41 1.83 16 16 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 17 N -0.92 -27.71 11.39 55.49 0.63 -27.08 16 18 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 C 0.12 2.62 8.77 -2.96 -0.03 2.59 16 23 C -0.13 -1.66 5.73 -26.61 -0.15 -1.81 16 24 C 0.12 1.36 6.44 -3.71 -0.02 1.34 16 25 C -0.17 -1.52 8.67 -37.50 -0.33 -1.84 16 26 C -0.02 -0.12 11.34 -16.82 -0.19 -0.31 16 27 N -0.45 -3.30 3.09 -119.88 -0.37 -3.67 16 28 C 0.07 0.23 10.82 59.84 0.65 0.87 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 0.84 7.67 -51.93 -0.40 0.44 16 31 H 0.06 0.35 6.92 -51.93 -0.36 -0.01 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.95 4.67 -51.93 -0.24 0.71 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.85 7.74 -51.93 -0.40 0.45 16 37 H 0.08 1.48 7.80 -51.93 -0.41 1.07 16 38 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.07 1.91 7.17 -51.93 -0.37 1.54 16 40 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.10 1.20 6.99 -51.93 -0.36 0.84 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.15 1.14 7.41 -52.48 -0.39 0.75 16 48 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 49 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 50 H 0.09 0.15 8.13 -51.93 -0.42 -0.27 16 51 H 0.08 0.21 6.87 -51.92 -0.36 -0.15 16 LS Contribution 405.33 15.07 6.11 6.11 Total: -1.00 -35.70 405.33 -9.99 -45.69 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -8.33 Total: -1.03 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -1.56 Total: 3.25 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.91 Total: -55.44 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.27 Total: -15.88 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.70 -9.99 -45.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093570524.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.658 kcal (2) G-P(sol) polarization free energy of solvation -35.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds