Wall clock time and date at job start Sat Apr 11 2020 08:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36772 * 125.80302 * 2 1 4 4 C 1.47261 * 126.93967 * 359.97438 * 3 2 1 5 5 O 1.21627 * 120.00048 * 39.31592 * 4 3 2 6 6 N 1.34775 * 119.99941 * 219.30881 * 4 3 2 7 7 C 1.46931 * 120.62830 * 5.11124 * 6 4 3 8 8 C 1.53619 * 108.54412 * 126.36932 * 7 6 4 9 9 C 1.53043 * 109.24175 * 54.85636 * 8 7 6 10 10 O 1.42899 * 109.46171 * 178.49413 * 9 8 7 11 11 C 1.42895 * 113.99823 * 270.06777 * 10 9 8 12 12 C 1.53943 * 113.74209 * 248.73804 * 11 10 9 13 13 N 1.47811 * 86.03976 * 222.08335 * 12 11 10 14 14 C 1.36939 * 134.45897 * 204.64248 * 13 12 11 15 15 H 1.08004 * 119.99929 * 179.86911 * 14 13 12 16 16 C 1.38809 * 119.99799 * 359.86721 * 14 13 12 17 17 N 1.31614 * 120.00351 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99782 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47053 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47009 * 120.00178 * 18 16 14 21 21 H 1.48500 * 109.46945 * 240.00004 * 18 16 14 22 22 C 1.47586 * 91.05009 * 24.54944 * 13 12 11 23 23 C 1.53046 * 109.53600 * 298.51089 * 9 8 7 24 24 C 1.46927 * 120.63309 * 185.39420 * 6 4 3 25 25 C 1.46682 * 106.11359 * 180.24366 * 3 2 1 26 26 C 1.34482 * 106.33414 * 359.74266 * 25 3 2 27 27 N 1.34660 * 125.79799 * 179.79552 * 2 1 3 28 28 C 1.46492 * 124.85218 * 0.02562 * 27 2 1 29 29 H 1.09006 * 109.47240 * 270.22790 * 1 2 3 30 30 H 1.09005 * 109.46874 * 30.22443 * 1 2 3 31 31 H 1.09001 * 109.47131 * 150.21989 * 1 2 3 32 32 H 1.09006 * 109.58623 * 246.19850 * 7 6 4 33 33 H 1.08995 * 109.58981 * 6.62675 * 7 6 4 34 34 H 1.09003 * 109.63729 * 294.86597 * 8 7 6 35 35 H 1.09002 * 109.43636 * 174.72509 * 8 7 6 36 36 H 1.08995 * 109.44977 * 58.52517 * 9 8 7 37 37 H 1.08998 * 112.94930 * 20.33126 * 11 10 9 38 38 H 1.09001 * 113.77388 * 336.34934 * 12 11 10 39 39 H 1.09001 * 113.77164 * 107.74392 * 12 11 10 40 40 H 0.97004 * 120.00196 * 179.97438 * 17 16 14 41 41 H 1.09001 * 113.76864 * 221.15015 * 22 13 12 42 42 H 1.08998 * 113.76549 * 89.75467 * 22 13 12 43 43 H 1.09000 * 109.50105 * 301.41423 * 23 9 8 44 44 H 1.08999 * 109.52377 * 181.33565 * 23 9 8 45 45 H 1.08994 * 109.58566 * 353.36883 * 24 6 4 46 46 H 1.08998 * 109.59046 * 113.65756 * 24 6 4 47 47 H 1.08006 * 126.83353 * 179.74904 * 25 3 2 48 48 H 1.08002 * 125.57583 * 179.97438 * 26 25 3 49 49 H 1.08999 * 109.47527 * 269.71929 * 28 27 2 50 50 H 1.09002 * 109.47381 * 149.71710 * 28 27 2 51 51 H 1.09007 * 109.47138 * 29.71976 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3072 1.1093 0.0000 4 6 1.8703 2.5156 -0.0005 5 8 0.9114 2.8548 0.6664 6 7 2.5331 3.4268 -0.7399 7 6 3.6220 3.0147 -1.6362 8 6 3.3270 3.5544 -3.0438 9 6 3.1137 5.0680 -2.9692 10 8 2.8735 5.5802 -4.2815 11 6 4.0576 5.9757 -4.9768 12 6 4.1740 7.4961 -5.1875 13 7 4.6426 7.1680 -6.5504 14 6 5.4180 7.8102 -7.4786 15 1 5.6213 7.3412 -8.4300 16 6 5.9427 9.0640 -7.1967 17 7 5.6946 9.6358 -6.0375 18 14 7.0011 9.9398 -8.4626 19 1 7.1278 9.0908 -9.6744 20 1 6.3678 11.2322 -8.8283 21 1 8.3484 10.1927 -7.8916 22 6 3.9416 5.8700 -6.5083 23 6 1.9093 5.3717 -2.0751 24 6 2.1846 4.8520 -0.6606 25 6 3.6882 0.6151 -0.0060 26 6 3.6095 -0.7274 -0.0033 27 7 2.2947 -1.0922 0.0039 28 6 1.8093 -2.4744 0.0083 29 1 -0.3634 0.0041 1.0277 30 1 -0.3633 0.8880 -0.5173 31 1 -0.3633 -0.8920 -0.5104 32 1 4.5663 3.4231 -1.2758 33 1 3.6795 1.9267 -1.6651 34 1 2.4283 3.0793 -3.4373 35 1 4.1704 3.3377 -3.6995 36 1 4.0035 5.5398 -2.5525 37 1 4.9606 5.5182 -4.5725 38 1 3.2170 8.0174 -5.1656 39 1 4.9319 7.9695 -4.5632 40 1 6.0616 10.5119 -5.8403 41 1 4.5142 5.0473 -6.9366 42 1 2.9161 5.9125 -6.8752 43 1 1.0240 4.8795 -2.4776 44 1 1.7431 6.4484 -2.0411 45 1 1.2934 4.9765 -0.0456 46 1 3.0130 5.4068 -0.2200 47 1 4.5891 1.2108 -0.0114 48 1 4.4497 -1.4061 -0.0066 49 1 1.6933 -2.8155 1.0370 50 1 2.5264 -3.1130 -0.5076 51 1 0.8470 -2.5232 -0.5014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093570524.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:25:21 Heat of formation + Delta-G solvation = 10.108001 kcal Electronic energy + Delta-G solvation = -30667.836524 eV Core-core repulsion = 26569.428059 eV Total energy + Delta-G solvation = -4098.408464 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.34902 -40.88235 -40.04678 -38.48629 -36.71502 -34.22651 -33.90353 -32.58930 -32.50943 -31.99674 -29.44944 -27.83009 -27.21310 -26.60156 -25.82201 -24.80346 -24.23153 -22.92035 -21.60204 -21.21452 -20.67632 -19.26491 -18.80906 -18.31699 -17.88670 -17.22712 -16.97972 -16.59718 -16.49151 -16.02584 -15.88797 -15.66232 -15.35396 -15.07622 -14.87250 -14.55164 -14.39349 -14.24498 -13.91952 -13.85927 -13.61290 -13.56566 -13.35468 -13.21684 -13.19861 -13.07597 -12.84669 -12.81459 -12.80519 -12.67065 -12.50355 -12.23292 -12.20447 -11.92445 -11.76068 -11.42768 -11.41346 -10.90209 -10.88523 -10.21185 -9.72099 -9.39736 -9.06295 -8.97490 -7.92463 -5.27874 0.86420 1.45909 1.47769 1.54602 1.58229 1.85850 2.18063 2.36027 2.43935 2.75654 3.27365 3.45369 3.67682 3.74186 3.84398 3.93563 3.97949 4.04591 4.08170 4.15567 4.16685 4.22819 4.32859 4.39846 4.44094 4.45349 4.57716 4.65587 4.67883 4.72562 4.76981 4.78683 4.83770 4.87120 4.88385 4.94408 4.96222 5.01855 5.09449 5.15007 5.20814 5.22435 5.24936 5.37156 5.48904 5.59803 5.83579 5.88187 6.14693 6.39582 6.47494 6.50201 6.88747 7.25438 7.57223 8.52396 9.24907 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022624 B = 0.001944 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.308946 B =14400.453908 C =14931.024991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.082 3.918 3 C -0.264 4.264 4 C 0.589 3.411 5 O -0.591 6.591 6 N -0.607 5.607 7 C 0.110 3.890 8 C -0.146 4.146 9 C 0.084 3.916 10 O -0.384 6.384 11 C 0.072 3.928 12 C 0.143 3.857 13 N -0.638 5.638 14 C -0.235 4.235 15 H 0.089 0.911 16 C -0.070 4.070 17 N -0.955 5.955 18 Si 0.984 3.016 19 H -0.262 1.262 20 H -0.294 1.294 21 H -0.288 1.288 22 C 0.121 3.879 23 C -0.122 4.122 24 C 0.119 3.881 25 C -0.184 4.184 26 C -0.006 4.006 27 N -0.442 5.442 28 C 0.059 3.941 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.011 0.989 39 H 0.046 0.954 40 H 0.249 0.751 41 H 0.069 0.931 42 H 0.042 0.958 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.157 0.843 48 H 0.202 0.798 49 H 0.086 0.914 50 H 0.108 0.892 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.433 -28.224 15.124 32.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.036 4.036 3 C -0.274 4.274 4 C 0.381 3.619 5 O -0.473 6.473 6 N -0.339 5.339 7 C -0.012 4.012 8 C -0.185 4.185 9 C 0.027 3.973 10 O -0.302 6.302 11 C 0.013 3.987 12 C 0.018 3.982 13 N -0.367 5.367 14 C -0.363 4.363 15 H 0.107 0.893 16 C -0.263 4.263 17 N -0.603 5.603 18 Si 0.812 3.188 19 H -0.186 1.186 20 H -0.221 1.221 21 H -0.215 1.215 22 C -0.004 4.004 23 C -0.160 4.160 24 C -0.004 4.004 25 C -0.208 4.208 26 C -0.132 4.132 27 N -0.118 5.118 28 C -0.081 4.081 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.131 0.869 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.117 0.883 38 H 0.029 0.971 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.104 0.896 46 H 0.102 0.898 47 H 0.175 0.825 48 H 0.219 0.781 49 H 0.104 0.896 50 H 0.127 0.873 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.023 -28.177 15.255 32.603 hybrid contribution 0.500 1.385 -0.582 1.583 sum -5.523 -26.793 14.674 31.043 Atomic orbital electron populations 1.20385 0.86875 1.03514 1.03367 1.20390 0.94211 0.85821 1.03193 1.20123 0.95305 0.90997 1.21004 1.17866 0.80896 0.85258 0.77875 1.90709 1.29597 1.81727 1.45294 1.48050 1.36111 1.07027 1.42683 1.22163 0.89138 1.02537 0.87355 1.22454 1.03119 0.95207 0.97707 1.22241 0.98208 0.93865 0.83031 1.87937 1.31403 1.82247 1.28577 1.24392 0.87726 0.94479 0.92121 1.22676 0.95413 0.93962 0.86196 1.46089 1.55901 1.18624 1.16088 1.19474 1.21476 0.99292 0.96027 0.89344 1.25733 1.02833 0.98090 0.99630 1.70035 1.49975 1.16566 1.23771 0.84927 0.77593 0.77950 0.78332 1.18636 1.22110 1.21519 1.22860 0.95748 0.88450 0.93352 1.21888 0.97837 1.02182 0.94138 1.21538 1.02355 0.80302 0.96165 1.22203 0.94846 0.94425 1.09297 1.22261 0.86131 0.96177 1.08675 1.43786 1.05876 1.06938 1.55168 1.22424 1.02882 0.78052 1.04778 0.90349 0.91899 0.88945 0.89696 0.86941 0.91877 0.89402 0.91545 0.88292 0.97111 0.93578 0.94155 0.91260 0.94000 0.91991 0.90045 0.89637 0.89808 0.82540 0.78143 0.89569 0.87318 0.88724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.34 9.51 71.24 0.68 -0.66 16 2 C 0.08 1.51 6.89 41.78 0.29 1.80 16 3 C -0.26 -5.91 5.35 -19.04 -0.10 -6.01 16 4 C 0.59 16.19 7.32 86.62 0.63 16.83 16 5 O -0.59 -20.12 15.77 -4.12 -0.06 -20.19 16 6 N -0.61 -14.44 2.97 -822.12 -2.44 -16.88 16 7 C 0.11 2.08 5.57 86.51 0.48 2.56 16 8 C -0.15 -3.24 5.71 30.82 0.18 -3.06 16 9 C 0.08 2.28 2.45 30.62 0.07 2.35 16 10 O -0.38 -13.39 10.01 -148.98 -1.49 -14.88 16 11 C 0.07 2.77 4.29 31.25 0.13 2.90 16 12 C 0.14 7.20 7.36 86.44 0.64 7.84 16 13 N -0.64 -34.05 3.70 -720.73 -2.67 -36.72 16 14 C -0.23 -13.44 10.70 84.03 0.90 -12.54 16 15 H 0.09 4.79 7.83 -2.91 -0.02 4.76 16 16 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 17 N -0.95 -58.78 11.39 21.65 0.25 -58.53 16 18 Si 0.98 46.09 29.55 68.60 2.03 48.12 16 19 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 21 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 22 C 0.12 5.08 8.77 86.49 0.76 5.84 16 23 C -0.12 -3.15 5.73 30.67 0.18 -2.97 16 24 C 0.12 2.83 6.44 86.36 0.56 3.39 16 25 C -0.18 -3.00 8.67 23.62 0.20 -2.79 16 26 C -0.01 -0.07 11.34 83.12 0.94 0.88 16 27 N -0.44 -5.40 3.09 -533.20 -1.65 -7.04 16 28 C 0.06 0.20 10.82 127.77 1.38 1.58 16 29 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.06 1.29 7.67 -2.38 -0.02 1.27 16 31 H 0.09 0.86 6.92 -2.39 -0.02 0.85 16 32 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.11 1.92 4.67 -2.39 -0.01 1.90 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.07 1.76 7.74 -2.39 -0.02 1.74 16 37 H 0.10 3.47 7.80 -2.39 -0.02 3.45 16 38 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.05 2.53 7.17 -2.39 -0.02 2.51 16 40 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 41 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.04 1.77 8.14 -2.39 -0.02 1.76 16 43 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.09 2.24 6.99 -2.39 -0.02 2.22 16 46 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.16 2.08 7.41 -2.91 -0.02 2.06 16 48 H 0.20 0.81 8.06 -2.91 -0.02 0.79 16 49 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 50 H 0.11 -0.08 8.13 -2.39 -0.02 -0.10 16 51 H 0.09 0.16 6.87 -2.38 -0.02 0.14 16 Total: -1.00 -79.48 405.33 3.27 -76.22 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.92 Total: 15.58 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 8.39 Total: 14.33 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -6.51 Total: -119.18 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -1.56 Total: -35.07 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -79.48 3.27 -76.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093570524.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.326 kcal (2) G-P(sol) polarization free energy of solvation -79.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds