Wall clock time and date at job start Sat Apr 11 2020 08:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.49776 * 2 1 4 4 C 1.53045 * 109.49655 * 239.90800 * 2 1 3 5 5 C 1.53041 * 109.53611 * 178.68318 * 4 2 1 6 6 C 1.52750 * 109.38376 * 61.23898 * 5 4 2 7 7 H 1.08996 * 109.43620 * 65.42182 * 6 5 4 8 8 C 1.53007 * 109.50806 * 185.70385 * 6 5 4 9 9 N 1.46507 * 109.46835 * 179.66187 * 8 6 5 10 10 C 1.34776 * 119.99588 * 179.97438 * 9 8 6 11 11 O 1.21286 * 120.00040 * 0.02562 * 10 9 8 12 12 C 1.50699 * 119.99915 * 179.97438 * 10 9 8 13 13 O 1.42901 * 109.47175 * 180.02562 * 12 10 9 14 14 C 1.35914 * 116.99663 * 180.02562 * 13 12 10 15 15 C 1.39146 * 120.46798 * 179.97438 * 14 13 12 16 16 C 1.38540 * 118.37018 * 179.97438 * 15 14 13 17 17 C 1.38248 * 119.22214 * 0.02562 * 16 15 14 18 18 N 1.31845 * 120.88824 * 359.97438 * 17 16 15 19 19 C 1.31844 * 121.78181 * 359.69951 * 18 17 16 20 20 N 1.46927 * 109.00968 * 305.58712 * 6 5 4 21 21 C 1.36939 * 120.62763 * 233.58561 * 20 6 5 22 22 H 1.07998 * 120.00419 * 49.23137 * 21 20 6 23 23 C 1.38814 * 119.99625 * 229.22581 * 21 20 6 24 24 N 1.31622 * 119.99655 * 188.82906 * 23 21 20 25 25 Si 1.86794 * 120.00384 * 8.55782 * 23 21 20 26 26 H 1.48496 * 109.47222 * 84.40159 * 25 23 21 27 27 H 1.48501 * 109.47347 * 204.40659 * 25 23 21 28 28 H 1.48500 * 109.46875 * 324.40409 * 25 23 21 29 29 C 1.46918 * 118.74051 * 53.30964 * 20 6 5 30 30 H 1.09001 * 109.47037 * 299.93182 * 1 2 3 31 31 H 1.09004 * 109.47229 * 59.93082 * 1 2 3 32 32 H 1.08994 * 109.46948 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47505 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47427 * 300.07119 * 3 2 1 35 35 H 1.09002 * 109.46739 * 60.06437 * 3 2 1 36 36 H 1.08998 * 109.45780 * 298.70676 * 4 2 1 37 37 H 1.09005 * 109.45653 * 58.66104 * 4 2 1 38 38 H 1.08995 * 109.49252 * 181.32008 * 5 4 2 39 39 H 1.08999 * 109.49363 * 301.40619 * 5 4 2 40 40 H 1.08998 * 109.47174 * 299.66433 * 8 6 5 41 41 H 1.08995 * 109.46810 * 59.66792 * 8 6 5 42 42 H 0.96998 * 120.00079 * 359.97438 * 9 8 6 43 43 H 1.08998 * 109.47343 * 300.00539 * 12 10 9 44 44 H 1.08996 * 109.46936 * 60.00187 * 12 10 9 45 45 H 1.07995 * 120.81379 * 0.02836 * 15 14 13 46 46 H 1.08002 * 120.38108 * 180.02562 * 16 15 14 47 47 H 1.07999 * 119.55515 * 179.97438 * 17 16 15 48 48 H 1.07995 * 119.66142 * 180.28999 * 19 18 17 49 49 H 0.96998 * 119.99990 * 179.72648 * 24 23 21 50 50 H 1.09000 * 109.58743 * 66.42665 * 29 20 6 51 51 H 1.09003 * 109.59067 * 186.71351 * 29 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 6 2.0408 -0.7234 -1.2483 5 6 3.5709 -0.6953 -1.2659 6 6 4.1055 -1.4215 -0.0330 7 1 3.8412 -2.4774 -0.0910 8 6 5.6272 -1.2732 0.0275 9 7 6.1382 -1.9632 1.2146 10 6 7.4605 -1.9667 1.4749 11 8 8.2274 -1.3982 0.7268 12 6 7.9862 -2.6759 2.6963 13 8 9.4074 -2.5376 2.7528 14 6 10.0432 -3.1242 3.8010 15 6 11.4261 -3.0352 3.9268 16 6 12.0292 -3.6490 5.0126 17 6 11.2439 -4.3249 5.9278 18 7 9.9355 -4.3905 5.7792 19 6 9.3223 -3.8149 4.7639 20 7 3.5046 -0.8288 1.1696 21 6 4.2937 -0.3779 2.1940 22 1 5.1301 0.2727 1.9853 23 6 4.0185 -0.7571 3.5007 24 7 4.6625 -0.1915 4.4995 25 14 2.7288 -2.0646 3.8419 26 1 3.3437 -3.4106 3.7181 27 1 2.1966 -1.8880 5.2170 28 1 1.6208 -1.9346 2.8618 29 6 2.0414 -0.7235 1.2497 30 1 -0.3633 0.5128 0.8906 31 1 -0.3634 0.5149 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1306 1.4419 -0.0005 34 1 1.6766 1.9567 -0.8894 35 1 1.6785 1.9559 0.8906 36 1 1.6967 -1.7575 -1.2350 37 1 1.6581 -0.2249 -2.1389 38 1 3.9333 -1.1901 -2.1669 39 1 3.9158 0.3386 -1.2543 40 1 6.0708 -1.7113 -0.8665 41 1 5.8873 -0.2162 0.0816 42 1 5.5248 -2.4175 1.8132 43 1 7.5429 -2.2372 3.5902 44 1 7.7255 -3.7329 2.6429 45 1 12.0147 -2.4999 3.1965 46 1 13.1003 -3.5999 5.1423 47 1 11.7085 -4.8058 6.7760 48 1 8.2481 -3.8863 4.6782 49 1 4.4674 -0.4536 5.4128 50 1 1.6053 -1.7212 1.2983 51 1 1.7638 -0.1596 2.1403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099275915.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:25:44 Heat of formation + Delta-G solvation = -12.069698 kcal Electronic energy + Delta-G solvation = -31701.630116 eV Core-core repulsion = 27602.259955 eV Total energy + Delta-G solvation = -4099.370161 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.63478 -39.46605 -38.75264 -37.60910 -35.17902 -33.19751 -32.49104 -32.29976 -30.88521 -30.47400 -28.86281 -26.99744 -26.81660 -25.60969 -23.91390 -23.42640 -22.76836 -22.49278 -20.20001 -19.84975 -18.44882 -18.29045 -17.32596 -16.71242 -16.50042 -16.22162 -15.83967 -15.45678 -15.21040 -14.91093 -14.41407 -14.24260 -14.11542 -13.86676 -13.63419 -13.50084 -13.30156 -13.15092 -12.94484 -12.67068 -12.45013 -12.40983 -12.17126 -11.91596 -11.65302 -11.60266 -11.40178 -11.26136 -11.13289 -10.94048 -10.82178 -10.65900 -10.42833 -9.97234 -9.77169 -9.76888 -9.67512 -9.53849 -9.37358 -9.24732 -8.63725 -8.46580 -8.28046 -6.70220 -6.09270 -3.71808 1.06221 1.25626 2.78584 3.12882 3.20908 3.34806 3.38176 3.76295 4.03228 4.39177 4.49094 4.62775 4.78157 4.81479 4.96296 5.09834 5.11585 5.18416 5.21028 5.29303 5.33116 5.36388 5.44694 5.48997 5.56012 5.68272 5.81985 5.92978 5.94460 5.98465 6.01759 6.02254 6.12035 6.17251 6.26293 6.27981 6.30465 6.34955 6.44924 6.48412 6.55432 6.67374 6.71409 6.81410 6.88672 7.05132 7.08794 7.22401 7.90759 7.98006 8.16061 8.35800 8.78750 8.83722 9.53696 10.03052 11.03088 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016689 B = 0.002917 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.336043 B = 9594.998038 C =10680.880045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 C -0.126 4.126 4 C -0.096 4.096 5 C -0.131 4.131 6 C 0.160 3.840 7 H 0.035 0.965 8 C 0.142 3.858 9 N -0.683 5.683 10 C 0.518 3.482 11 O -0.544 6.544 12 C 0.037 3.963 13 O -0.281 6.281 14 C 0.088 3.912 15 C -0.110 4.110 16 C -0.134 4.134 17 C 0.051 3.949 18 N -0.449 5.449 19 C 0.016 3.984 20 N -0.602 5.602 21 C -0.262 4.262 22 H 0.077 0.923 23 C 0.043 3.957 24 N -0.901 5.901 25 Si 0.844 3.156 26 H -0.286 1.286 27 H -0.300 1.300 28 H -0.236 1.236 29 C 0.151 3.849 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.035 0.965 35 H 0.046 0.954 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.410 0.590 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.143 0.857 46 H 0.140 0.860 47 H 0.155 0.845 48 H 0.160 0.840 49 H 0.264 0.736 50 H 0.030 0.970 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.089 -6.362 -4.803 8.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.091 4.091 3 C -0.184 4.184 4 C -0.134 4.134 5 C -0.171 4.171 6 C 0.054 3.946 7 H 0.053 0.947 8 C 0.018 3.982 9 N -0.335 5.335 10 C 0.302 3.698 11 O -0.423 6.423 12 C -0.042 4.042 13 O -0.192 6.192 14 C 0.039 3.961 15 C -0.136 4.136 16 C -0.153 4.153 17 C -0.106 4.106 18 N -0.159 5.159 19 C -0.142 4.142 20 N -0.327 5.327 21 C -0.391 4.391 22 H 0.094 0.906 23 C -0.159 4.159 24 N -0.542 5.542 25 Si 0.672 3.328 26 H -0.213 1.213 27 H -0.227 1.227 28 H -0.160 1.160 29 C 0.026 3.974 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.247 0.753 43 H 0.122 0.878 44 H 0.105 0.895 45 H 0.161 0.839 46 H 0.158 0.842 47 H 0.173 0.827 48 H 0.177 0.823 49 H 0.074 0.926 50 H 0.048 0.952 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.236 -6.269 -4.701 8.477 hybrid contribution -0.781 -0.422 0.354 0.956 sum 2.454 -6.691 -4.346 8.348 Atomic orbital electron populations 1.21811 0.95816 1.00922 1.00990 1.21124 0.93945 0.96651 0.97347 1.21718 1.02441 0.94549 0.99645 1.21412 0.95459 0.99602 0.96895 1.21919 0.95847 1.01694 0.97599 1.20762 0.90697 0.95113 0.88062 0.94716 1.21226 0.93055 0.97872 0.86015 1.45678 1.05927 1.54347 1.27518 1.19644 0.83140 0.81286 0.85690 1.90678 1.56910 1.45286 1.49379 1.22626 0.79583 1.01593 1.00373 1.86157 1.20436 1.70517 1.42079 1.20170 0.93237 0.93926 0.88727 1.20960 0.91651 1.01415 0.99615 1.21984 1.01422 0.97599 0.94329 1.22631 0.89348 0.99193 0.99460 1.67523 1.11478 1.16569 1.20302 1.23025 1.00923 0.98495 0.91746 1.44315 1.00765 1.70428 1.17163 1.18668 1.11269 1.24683 0.84520 0.90589 1.25750 0.96777 0.97203 0.96137 1.69791 1.42603 1.42786 0.98975 0.87711 0.84567 0.82711 0.77808 1.21277 1.22676 1.16014 1.21730 0.84586 0.96338 0.94755 0.92990 0.93412 0.93316 0.91265 0.94628 0.93444 0.92838 0.93119 0.92676 0.91262 0.92508 0.91227 0.75284 0.87790 0.89459 0.83907 0.84213 0.82723 0.82254 0.92598 0.95245 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.48 37.16 0.32 -1.53 16 2 C -0.09 -1.38 0.77 -154.38 -0.12 -1.50 16 3 C -0.13 -2.02 7.99 37.16 0.30 -1.72 16 4 C -0.10 -1.34 4.71 -26.69 -0.13 -1.47 16 5 C -0.13 -1.91 5.00 -26.84 -0.13 -2.04 16 6 C 0.16 2.69 3.00 -67.82 -0.20 2.48 16 7 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 8 C 0.14 2.50 4.49 -4.03 -0.02 2.48 16 9 N -0.68 -12.53 4.13 -60.29 -0.25 -12.78 16 10 C 0.52 9.94 7.91 -10.99 -0.09 9.86 16 11 O -0.54 -12.19 16.50 -14.36 -0.24 -12.42 16 12 C 0.04 0.60 5.23 36.01 0.19 0.78 16 13 O -0.28 -4.82 9.68 -39.38 -0.38 -5.20 16 14 C 0.09 1.32 6.71 -39.07 -0.26 1.05 16 15 C -0.11 -1.38 10.13 -39.13 -0.40 -1.78 16 16 C -0.13 -1.39 10.11 -39.47 -0.40 -1.78 16 17 C 0.05 0.59 11.18 -17.54 -0.20 0.40 16 18 N -0.45 -6.49 10.36 -13.13 -0.14 -6.63 16 19 C 0.02 0.24 10.22 -17.37 -0.18 0.06 16 20 N -0.60 -11.82 1.85 -165.04 -0.31 -12.13 16 21 C -0.26 -6.14 6.60 -15.06 -0.10 -6.24 16 22 H 0.08 2.07 7.09 -52.49 -0.37 1.69 16 23 C 0.04 1.07 5.29 -17.43 -0.09 0.98 16 24 N -0.90 -24.64 13.97 55.49 0.78 -23.87 16 25 Si 0.84 18.67 26.62 -169.99 -4.53 14.15 16 26 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.30 -7.12 7.11 56.52 0.40 -6.71 16 28 H -0.24 -4.83 3.87 56.52 0.22 -4.61 16 29 C 0.15 2.82 2.71 -3.72 -0.01 2.81 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.24 5.97 -51.93 -0.31 0.93 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 1.07 6.34 -51.93 -0.33 0.74 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.07 1.39 7.47 -51.93 -0.39 1.00 16 42 H 0.41 7.59 7.32 -40.82 -0.30 7.29 16 43 H 0.10 1.74 7.67 -51.93 -0.40 1.34 16 44 H 0.09 1.14 7.69 -51.93 -0.40 0.74 16 45 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 46 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 48 H 0.16 2.16 6.32 -52.49 -0.33 1.83 16 49 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 50 H 0.03 0.56 6.36 -51.93 -0.33 0.23 16 51 H 0.06 1.33 6.49 -51.93 -0.34 1.00 16 LS Contribution 394.33 15.07 5.94 5.94 Total: -1.00 -29.78 394.33 -8.95 -38.73 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -8.31 Total: 11.38 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -1.52 Total: 2.84 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.08 Total: -55.41 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.62 Total: -17.63 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -4.53 Total: 14.15 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.78 -8.95 -38.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099275915.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.659 kcal (2) G-P(sol) polarization free energy of solvation -29.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds