Wall clock time and date at job start Sat Apr 11 2020 08:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.49776 * 2 1 4 4 C 1.53045 * 109.49655 * 239.90800 * 2 1 3 5 5 C 1.53041 * 109.53611 * 178.68318 * 4 2 1 6 6 C 1.52750 * 109.38376 * 61.23898 * 5 4 2 7 7 H 1.08996 * 109.43620 * 65.42182 * 6 5 4 8 8 C 1.53007 * 109.50806 * 185.70385 * 6 5 4 9 9 N 1.46507 * 109.46835 * 179.66187 * 8 6 5 10 10 C 1.34776 * 119.99588 * 179.97438 * 9 8 6 11 11 O 1.21286 * 120.00040 * 0.02562 * 10 9 8 12 12 C 1.50699 * 119.99915 * 179.97438 * 10 9 8 13 13 O 1.42901 * 109.47175 * 180.02562 * 12 10 9 14 14 C 1.35914 * 116.99663 * 180.02562 * 13 12 10 15 15 C 1.39146 * 120.46798 * 179.97438 * 14 13 12 16 16 C 1.38540 * 118.37018 * 179.97438 * 15 14 13 17 17 C 1.38248 * 119.22214 * 0.02562 * 16 15 14 18 18 N 1.31845 * 120.88824 * 359.97438 * 17 16 15 19 19 C 1.31844 * 121.78181 * 359.69951 * 18 17 16 20 20 N 1.46927 * 109.00968 * 305.58712 * 6 5 4 21 21 C 1.36939 * 120.62763 * 233.58561 * 20 6 5 22 22 H 1.07998 * 120.00419 * 49.23137 * 21 20 6 23 23 C 1.38814 * 119.99625 * 229.22581 * 21 20 6 24 24 N 1.31622 * 119.99655 * 188.82906 * 23 21 20 25 25 Si 1.86794 * 120.00384 * 8.55782 * 23 21 20 26 26 H 1.48496 * 109.47222 * 84.40159 * 25 23 21 27 27 H 1.48501 * 109.47347 * 204.40659 * 25 23 21 28 28 H 1.48500 * 109.46875 * 324.40409 * 25 23 21 29 29 C 1.46918 * 118.74051 * 53.30964 * 20 6 5 30 30 H 1.09001 * 109.47037 * 299.93182 * 1 2 3 31 31 H 1.09004 * 109.47229 * 59.93082 * 1 2 3 32 32 H 1.08994 * 109.46948 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47505 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47427 * 300.07119 * 3 2 1 35 35 H 1.09002 * 109.46739 * 60.06437 * 3 2 1 36 36 H 1.08998 * 109.45780 * 298.70676 * 4 2 1 37 37 H 1.09005 * 109.45653 * 58.66104 * 4 2 1 38 38 H 1.08995 * 109.49252 * 181.32008 * 5 4 2 39 39 H 1.08999 * 109.49363 * 301.40619 * 5 4 2 40 40 H 1.08998 * 109.47174 * 299.66433 * 8 6 5 41 41 H 1.08995 * 109.46810 * 59.66792 * 8 6 5 42 42 H 0.96998 * 120.00079 * 359.97438 * 9 8 6 43 43 H 1.08998 * 109.47343 * 300.00539 * 12 10 9 44 44 H 1.08996 * 109.46936 * 60.00187 * 12 10 9 45 45 H 1.07995 * 120.81379 * 0.02836 * 15 14 13 46 46 H 1.08002 * 120.38108 * 180.02562 * 16 15 14 47 47 H 1.07999 * 119.55515 * 179.97438 * 17 16 15 48 48 H 1.07995 * 119.66142 * 180.28999 * 19 18 17 49 49 H 0.96998 * 119.99990 * 179.72648 * 24 23 21 50 50 H 1.09000 * 109.58743 * 66.42665 * 29 20 6 51 51 H 1.09003 * 109.59067 * 186.71351 * 29 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 6 2.0408 -0.7234 -1.2483 5 6 3.5709 -0.6953 -1.2659 6 6 4.1055 -1.4215 -0.0330 7 1 3.8412 -2.4774 -0.0910 8 6 5.6272 -1.2732 0.0275 9 7 6.1382 -1.9632 1.2146 10 6 7.4605 -1.9667 1.4749 11 8 8.2274 -1.3982 0.7268 12 6 7.9862 -2.6759 2.6963 13 8 9.4074 -2.5376 2.7528 14 6 10.0432 -3.1242 3.8010 15 6 11.4261 -3.0352 3.9268 16 6 12.0292 -3.6490 5.0126 17 6 11.2439 -4.3249 5.9278 18 7 9.9355 -4.3905 5.7792 19 6 9.3223 -3.8149 4.7639 20 7 3.5046 -0.8288 1.1696 21 6 4.2937 -0.3779 2.1940 22 1 5.1301 0.2727 1.9853 23 6 4.0185 -0.7571 3.5007 24 7 4.6625 -0.1915 4.4995 25 14 2.7288 -2.0646 3.8419 26 1 3.3437 -3.4106 3.7181 27 1 2.1966 -1.8880 5.2170 28 1 1.6208 -1.9346 2.8618 29 6 2.0414 -0.7235 1.2497 30 1 -0.3633 0.5128 0.8906 31 1 -0.3634 0.5149 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1306 1.4419 -0.0005 34 1 1.6766 1.9567 -0.8894 35 1 1.6785 1.9559 0.8906 36 1 1.6967 -1.7575 -1.2350 37 1 1.6581 -0.2249 -2.1389 38 1 3.9333 -1.1901 -2.1669 39 1 3.9158 0.3386 -1.2543 40 1 6.0708 -1.7113 -0.8665 41 1 5.8873 -0.2162 0.0816 42 1 5.5248 -2.4175 1.8132 43 1 7.5429 -2.2372 3.5902 44 1 7.7255 -3.7329 2.6429 45 1 12.0147 -2.4999 3.1965 46 1 13.1003 -3.5999 5.1423 47 1 11.7085 -4.8058 6.7760 48 1 8.2481 -3.8863 4.6782 49 1 4.4674 -0.4536 5.4128 50 1 1.6053 -1.7212 1.2983 51 1 1.7638 -0.1596 2.1403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099275915.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:25:43 Heat of formation + Delta-G solvation = -29.945930 kcal Electronic energy + Delta-G solvation = -31702.405288 eV Core-core repulsion = 27602.259955 eV Total energy + Delta-G solvation = -4100.145333 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.75329 -40.88764 -40.11015 -38.86542 -36.65329 -34.91321 -33.85830 -33.41534 -32.54150 -31.53157 -30.15568 -28.27763 -28.06306 -27.27575 -25.17947 -24.59021 -24.07452 -23.68815 -21.73926 -21.30567 -19.85237 -19.44363 -18.76727 -18.02091 -17.70973 -17.55618 -17.18050 -16.97027 -16.63525 -16.48614 -15.58672 -15.49301 -15.36971 -15.26986 -15.00310 -14.80461 -14.55418 -14.47896 -14.21426 -14.12556 -13.92192 -13.69555 -13.32320 -13.14906 -13.05353 -12.81395 -12.74798 -12.67461 -12.53522 -12.49054 -12.26451 -12.06290 -11.92554 -11.42086 -11.22064 -11.07455 -10.97488 -10.83355 -10.72631 -10.47312 -10.41048 -9.89750 -9.54624 -8.39749 -8.05290 -5.65360 0.09051 0.25056 1.41564 1.47218 1.52733 1.56758 1.64082 2.52205 2.69025 2.77905 3.19183 3.33808 3.48208 3.57177 3.75170 3.92027 3.92985 3.96602 3.98646 4.07370 4.10044 4.11373 4.29432 4.37704 4.43649 4.49969 4.59897 4.62901 4.74025 4.78970 4.88780 4.92164 4.97545 5.01940 5.07472 5.09691 5.09870 5.14692 5.16093 5.23145 5.32586 5.47552 5.49306 5.51771 5.58374 5.62065 5.77522 6.05937 6.07210 6.38735 6.61422 6.92076 7.08408 7.24285 7.67384 8.19139 9.10195 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016689 B = 0.002917 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.336043 B = 9594.998038 C =10680.880045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.087 4.087 3 C -0.121 4.121 4 C -0.091 4.091 5 C -0.127 4.127 6 C 0.161 3.839 7 H 0.055 0.945 8 C 0.143 3.857 9 N -0.680 5.680 10 C 0.513 3.487 11 O -0.581 6.581 12 C 0.045 3.955 13 O -0.304 6.304 14 C 0.060 3.940 15 C -0.117 4.117 16 C -0.117 4.117 17 C 0.052 3.948 18 N -0.477 5.477 19 C 0.001 3.999 20 N -0.609 5.609 21 C -0.226 4.226 22 H 0.028 0.972 23 C -0.003 4.003 24 N -0.953 5.953 25 Si 0.893 3.107 26 H -0.278 1.278 27 H -0.323 1.323 28 H -0.205 1.205 29 C 0.147 3.853 30 H 0.044 0.956 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.059 0.941 35 H 0.030 0.970 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.036 0.964 42 H 0.410 0.590 43 H 0.093 0.907 44 H 0.120 0.880 45 H 0.155 0.845 46 H 0.184 0.816 47 H 0.190 0.810 48 H 0.158 0.842 49 H 0.257 0.743 50 H 0.039 0.961 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.395 -8.406 -6.463 10.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.089 4.089 3 C -0.179 4.179 4 C -0.128 4.128 5 C -0.166 4.166 6 C 0.055 3.945 7 H 0.072 0.928 8 C 0.020 3.980 9 N -0.330 5.330 10 C 0.298 3.702 11 O -0.463 6.463 12 C -0.033 4.033 13 O -0.216 6.216 14 C 0.013 3.987 15 C -0.143 4.143 16 C -0.136 4.136 17 C -0.106 4.106 18 N -0.186 5.186 19 C -0.156 4.156 20 N -0.335 5.335 21 C -0.357 4.357 22 H 0.046 0.954 23 C -0.200 4.200 24 N -0.597 5.597 25 Si 0.721 3.279 26 H -0.204 1.204 27 H -0.252 1.252 28 H -0.128 1.128 29 C 0.023 3.977 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.055 0.945 42 H 0.247 0.753 43 H 0.111 0.889 44 H 0.138 0.862 45 H 0.172 0.828 46 H 0.201 0.799 47 H 0.207 0.793 48 H 0.175 0.825 49 H 0.066 0.934 50 H 0.056 0.944 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.499 -8.332 -6.413 10.807 hybrid contribution -0.422 0.291 0.867 1.007 sum 2.077 -8.041 -5.547 9.987 Atomic orbital electron populations 1.21766 0.93656 1.01927 1.01739 1.21078 0.95642 0.95634 0.96502 1.21656 1.00634 0.95527 1.00032 1.21404 0.94410 1.00378 0.96655 1.21883 0.96721 1.00772 0.97241 1.20929 0.89630 0.96191 0.87708 0.92760 1.21275 0.94189 0.96046 0.86531 1.45711 1.05804 1.53872 1.27658 1.20158 0.83085 0.80803 0.86111 1.90642 1.57742 1.46962 1.50908 1.22508 0.79782 1.02894 0.98093 1.86104 1.20398 1.71670 1.43425 1.20443 0.94283 0.95217 0.88773 1.21344 0.90817 1.01497 1.00686 1.22439 1.03413 0.95327 0.92430 1.23332 0.88534 0.98398 1.00384 1.67546 1.13234 1.17424 1.20427 1.23017 1.01110 0.99259 0.92231 1.44366 1.01212 1.70751 1.17178 1.18213 1.09649 1.22366 0.85454 0.95438 1.26224 0.98808 0.99142 0.95819 1.69949 1.45343 1.45246 0.99135 0.86924 0.83443 0.80636 0.76861 1.20369 1.25233 1.12840 1.21722 0.83582 0.96753 0.95659 0.93674 0.91343 0.92176 0.93957 0.92171 0.95095 0.91507 0.90741 0.89817 0.92728 0.90472 0.94520 0.75302 0.88938 0.86223 0.82754 0.79855 0.79301 0.82483 0.93362 0.94365 0.94479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.48 71.98 0.61 -2.49 16 2 C -0.09 -2.47 0.77 -52.10 -0.04 -2.51 16 3 C -0.12 -3.75 7.99 71.98 0.57 -3.18 16 4 C -0.09 -2.16 4.71 30.62 0.14 -2.02 16 5 C -0.13 -3.36 5.00 30.53 0.15 -3.21 16 6 C 0.16 5.17 3.00 44.83 0.13 5.31 16 7 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 8 C 0.14 5.11 4.49 86.38 0.39 5.50 16 9 N -0.68 -25.71 4.13 -463.04 -1.91 -27.62 16 10 C 0.51 20.59 7.91 87.66 0.69 21.29 16 11 O -0.58 -27.25 16.50 15.99 0.26 -26.99 16 12 C 0.05 1.55 5.23 71.24 0.37 1.92 16 13 O -0.30 -10.91 9.68 -73.54 -0.71 -11.63 16 14 C 0.06 1.85 6.71 22.60 0.15 2.00 16 15 C -0.12 -2.85 10.13 22.56 0.23 -2.62 16 16 C -0.12 -2.11 10.11 22.34 0.23 -1.88 16 17 C 0.05 1.07 11.18 84.69 0.95 2.02 16 18 N -0.48 -13.54 10.36 -195.45 -2.02 -15.56 16 19 C 0.00 0.02 10.22 84.80 0.87 0.88 16 20 N -0.61 -23.81 1.85 -676.06 -1.25 -25.07 16 21 C -0.23 -11.04 6.60 84.03 0.55 -10.49 16 22 H 0.03 1.63 7.09 -2.91 -0.02 1.61 16 23 C 0.00 -0.16 5.29 84.86 0.45 0.29 16 24 N -0.95 -55.14 13.97 21.65 0.30 -54.84 16 25 Si 0.89 38.99 26.62 68.60 1.83 40.82 16 26 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 27 H -0.32 -15.43 7.11 99.48 0.71 -14.72 16 28 H -0.20 -7.88 3.87 99.48 0.39 -7.49 16 29 C 0.15 5.27 2.71 86.36 0.23 5.50 16 30 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.04 1.52 5.97 -2.39 -0.01 1.51 16 34 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.05 1.62 6.34 -2.39 -0.02 1.61 16 40 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.04 1.55 7.47 -2.39 -0.02 1.53 16 42 H 0.41 15.46 7.32 -92.71 -0.68 14.78 16 43 H 0.09 3.35 7.67 -2.39 -0.02 3.34 16 44 H 0.12 3.20 7.69 -2.39 -0.02 3.19 16 45 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 46 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 47 H 0.19 2.49 8.06 -2.91 -0.02 2.47 16 48 H 0.16 4.53 6.32 -2.91 -0.02 4.51 16 49 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 50 H 0.04 1.33 6.36 -2.39 -0.02 1.31 16 51 H 0.04 1.52 6.49 -2.39 -0.02 1.50 16 Total: -1.00 -69.89 394.33 3.11 -66.79 By element: Atomic # 1 Polarization: 37.84 SS G_CDS: -0.07 Total: 37.77 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 6.69 Total: 16.32 kcal Atomic # 7 Polarization: -118.20 SS G_CDS: -4.89 Total: -123.09 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -0.45 Total: -38.61 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 1.83 Total: 40.82 kcal Total: -69.89 3.11 -66.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099275915.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.841 kcal (2) G-P(sol) polarization free energy of solvation -69.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds