Wall clock time and date at job start Sat Apr 11 2020 08:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.49768 * 2 1 4 4 C 1.53037 * 109.49790 * 239.89328 * 2 1 3 5 5 C 1.53042 * 109.53804 * 178.68425 * 4 2 1 6 6 C 1.53196 * 109.30690 * 61.37209 * 5 4 2 7 7 H 1.08999 * 109.70846 * 65.22594 * 6 5 4 8 8 C 1.53007 * 109.58098 * 185.57622 * 6 5 4 9 9 N 1.46500 * 109.46927 * 179.50819 * 8 6 5 10 10 C 1.34778 * 120.00150 * 179.97438 * 9 8 6 11 11 O 1.21281 * 119.99737 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99724 * 180.02562 * 10 9 8 13 13 N 1.46507 * 109.46500 * 180.02562 * 12 10 9 14 14 C 1.35766 * 119.62467 * 90.00204 * 13 12 10 15 15 C 1.35341 * 120.69951 * 179.97438 * 14 13 12 16 16 C 1.40192 * 119.95213 * 0.02562 * 15 14 13 17 17 C 1.36394 * 119.26591 * 0.02562 * 16 15 14 18 18 C 1.34657 * 119.62209 * 269.72736 * 13 12 10 19 19 O 1.22060 * 119.98788 * 359.97438 * 18 13 12 20 20 N 1.46928 * 108.77401 * 305.36083 * 6 5 4 21 21 C 1.36937 * 120.62891 * 233.63252 * 20 6 5 22 22 H 1.08007 * 120.00022 * 31.12265 * 21 20 6 23 23 C 1.38806 * 119.99874 * 211.12269 * 21 20 6 24 24 N 1.31619 * 120.00286 * 13.93147 * 23 21 20 25 25 Si 1.86805 * 120.00012 * 193.93411 * 23 21 20 26 26 H 1.48503 * 109.46951 * 89.99972 * 25 23 21 27 27 H 1.48495 * 109.47200 * 209.99440 * 25 23 21 28 28 H 1.48496 * 109.47361 * 330.00092 * 25 23 21 29 29 C 1.46923 * 118.73772 * 53.61775 * 20 6 5 30 30 H 1.08999 * 109.47542 * 299.93925 * 1 2 3 31 31 H 1.09003 * 109.46997 * 59.93579 * 1 2 3 32 32 H 1.08998 * 109.47515 * 179.97438 * 1 2 3 33 33 H 1.09010 * 109.46618 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47156 * 300.05642 * 3 2 1 35 35 H 1.08991 * 109.47441 * 60.06209 * 3 2 1 36 36 H 1.08994 * 109.46515 * 298.71161 * 4 2 1 37 37 H 1.09001 * 109.45534 * 58.68390 * 4 2 1 38 38 H 1.08990 * 109.49853 * 301.42069 * 5 4 2 39 39 H 1.08997 * 109.49559 * 181.31972 * 5 4 2 40 40 H 1.08996 * 109.47000 * 299.51022 * 8 6 5 41 41 H 1.09000 * 109.47341 * 59.51321 * 8 6 5 42 42 H 0.97003 * 119.99785 * 0.02562 * 9 8 6 43 43 H 1.08996 * 109.47570 * 299.99852 * 12 10 9 44 44 H 1.08996 * 109.47254 * 60.00725 * 12 10 9 45 45 H 1.07996 * 119.64904 * 359.97438 * 14 13 12 46 46 H 1.08008 * 120.02263 * 180.02562 * 15 14 13 47 47 H 1.08007 * 120.36922 * 179.97438 * 16 15 14 48 48 H 1.08003 * 120.35195 * 180.02562 * 17 16 15 49 49 H 0.96998 * 120.00633 * 180.02562 * 24 23 21 50 50 H 1.08996 * 109.58896 * 66.17314 * 29 20 6 51 51 H 1.09002 * 109.58189 * 186.46382 * 29 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4422 0.0000 4 6 2.0408 -0.7236 -1.2480 5 6 3.5708 -0.6956 -1.2656 6 6 4.1051 -1.4269 -0.0301 7 1 3.8395 -2.4827 -0.0844 8 6 5.6272 -1.2836 0.0323 9 7 6.1343 -1.9738 1.2209 10 6 7.4563 -1.9814 1.4832 11 8 8.2260 -1.4165 0.7354 12 6 7.9778 -2.6919 2.7056 13 7 9.4352 -2.5546 2.7654 14 6 9.9836 -1.4994 3.4205 15 6 11.3271 -1.3515 3.4897 16 6 12.1673 -2.2939 2.8803 17 6 11.6146 -3.3527 2.2217 18 6 10.2157 -3.4794 2.1748 19 8 9.7079 -4.4255 1.5942 20 7 3.5044 -0.8288 1.1700 21 6 4.2934 -0.3779 2.1943 22 1 5.2782 0.0135 1.9855 23 6 3.8276 -0.4238 3.5011 24 7 2.7625 -1.1388 3.7954 25 14 4.7124 0.5292 4.8421 26 1 4.1319 1.8922 4.9460 27 1 4.5528 -0.1768 6.1387 28 1 6.1557 0.6302 4.5077 29 6 2.0412 -0.7235 1.2499 30 1 -0.3634 0.5129 0.8905 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1307 1.4416 -0.0005 34 1 1.6767 1.9565 -0.8895 35 1 1.6785 1.9559 0.8904 36 1 1.6966 -1.7577 -1.2346 37 1 1.6584 -0.2252 -2.1387 38 1 3.9159 0.3382 -1.2541 39 1 3.9334 -1.1906 -2.1665 40 1 6.0705 -1.7243 -0.8606 41 1 5.8909 -0.2273 0.0855 42 1 5.5186 -2.4260 1.8188 43 1 7.5348 -2.2514 3.5987 44 1 7.7140 -3.7481 2.6522 45 1 9.3408 -0.7704 3.8914 46 1 11.7516 -0.5081 4.0141 47 1 13.2404 -2.1822 2.9310 48 1 12.2454 -4.0893 1.7463 49 1 2.4367 -1.1707 4.7085 50 1 1.6051 -1.7212 1.2987 51 1 1.7636 -0.1593 2.1403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099334274.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:25:53 Heat of formation + Delta-G solvation = -33.267076 kcal Electronic energy + Delta-G solvation = -32225.487275 eV Core-core repulsion = 28125.197927 eV Total energy + Delta-G solvation = -4100.289349 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.47227 -40.75487 -39.84905 -37.96176 -36.68805 -35.47009 -34.98458 -33.73693 -31.73501 -30.91497 -30.12756 -28.26969 -28.01626 -27.30518 -25.19387 -24.69902 -23.95593 -23.53632 -21.75299 -21.40492 -19.47517 -18.93173 -18.50380 -18.32897 -17.86640 -17.35541 -17.24934 -16.65080 -16.24101 -16.13428 -15.79107 -15.41718 -15.40142 -15.27866 -15.09162 -14.77988 -14.71840 -14.45540 -14.07650 -13.76470 -13.51163 -13.27686 -13.07891 -12.99012 -12.95830 -12.82164 -12.73993 -12.71302 -12.50683 -12.47221 -12.19654 -12.11207 -11.83351 -11.66928 -11.49837 -11.26704 -11.09382 -10.99596 -10.89811 -10.70633 -10.46349 -9.91411 -8.98517 -8.49930 -7.75976 -5.24011 -0.08876 0.92755 1.43776 1.47513 1.52611 1.55712 1.56594 2.30695 2.53842 2.76962 3.38033 3.57747 3.64777 3.71783 3.78743 3.98319 4.02620 4.03519 4.13928 4.19788 4.22334 4.31211 4.36094 4.41189 4.50601 4.51830 4.66475 4.72644 4.85999 4.92121 4.94904 5.02348 5.05022 5.08947 5.13387 5.15245 5.17744 5.25281 5.36544 5.39915 5.45466 5.52277 5.57073 5.62820 5.64266 5.74854 5.82784 5.89563 6.07055 6.49177 6.58829 6.95785 7.20038 7.24655 7.93159 8.48644 9.27963 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014325 B = 0.003346 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.093420 B = 8365.017876 C = 9549.559074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.093 4.093 3 C -0.116 4.116 4 C -0.091 4.091 5 C -0.124 4.124 6 C 0.162 3.838 7 H 0.027 0.973 8 C 0.143 3.857 9 N -0.686 5.686 10 C 0.497 3.503 11 O -0.586 6.586 12 C 0.071 3.929 13 N -0.479 5.479 14 C 0.125 3.875 15 C -0.225 4.225 16 C 0.009 3.991 17 C -0.278 4.278 18 C 0.497 3.503 19 O -0.611 6.611 20 N -0.595 5.595 21 C -0.232 4.232 22 H 0.065 0.935 23 C -0.034 4.034 24 N -0.926 5.926 25 Si 0.938 3.062 26 H -0.301 1.301 27 H -0.297 1.297 28 H -0.262 1.262 29 C 0.197 3.803 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.029 0.971 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.051 0.949 42 H 0.415 0.585 43 H 0.149 0.851 44 H 0.125 0.875 45 H 0.181 0.819 46 H 0.184 0.816 47 H 0.176 0.824 48 H 0.151 0.849 49 H 0.246 0.754 50 H -0.008 1.008 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.846 2.005 -1.669 9.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.094 4.094 3 C -0.174 4.174 4 C -0.129 4.129 5 C -0.164 4.164 6 C 0.055 3.945 7 H 0.044 0.956 8 C 0.019 3.981 9 N -0.336 5.336 10 C 0.282 3.718 11 O -0.467 6.467 12 C -0.054 4.054 13 N -0.187 5.187 14 C -0.002 4.002 15 C -0.247 4.247 16 C -0.012 4.012 17 C -0.299 4.299 18 C 0.302 3.698 19 O -0.499 6.499 20 N -0.318 5.318 21 C -0.363 4.363 22 H 0.082 0.918 23 C -0.230 4.230 24 N -0.572 5.572 25 Si 0.768 3.232 26 H -0.229 1.229 27 H -0.224 1.224 28 H -0.186 1.186 29 C 0.071 3.929 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.252 0.748 43 H 0.167 0.833 44 H 0.143 0.857 45 H 0.198 0.802 46 H 0.201 0.799 47 H 0.193 0.807 48 H 0.169 0.831 49 H 0.055 0.945 50 H 0.010 0.990 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.956 1.767 -2.403 9.440 hybrid contribution -0.418 0.135 1.282 1.355 sum 8.538 1.902 -1.121 8.819 Atomic orbital electron populations 1.21708 0.94312 1.01265 1.01362 1.21157 0.95278 0.96072 0.96905 1.21611 1.00840 0.95086 0.99830 1.21386 0.94809 0.99709 0.96987 1.21945 0.96466 1.00883 0.97082 1.20833 0.89929 0.95083 0.88615 0.95564 1.21228 0.93862 0.96387 0.86628 1.45933 1.06466 1.53833 1.27396 1.20908 0.82890 0.80709 0.87301 1.90654 1.57363 1.47739 1.50972 1.21862 0.79610 1.04888 0.99058 1.45097 1.07523 1.22095 1.43999 1.22599 0.97348 0.88494 0.91712 1.21172 0.90882 1.04321 1.08319 1.21890 1.02607 0.89345 0.87383 1.22137 0.91819 1.05133 1.10816 1.17753 0.89829 0.82274 0.79921 1.90891 1.76846 1.34504 1.47699 1.44185 1.01820 1.69659 1.16183 1.19215 0.99363 1.32509 0.85190 0.91794 1.25546 0.99085 0.99736 0.98678 1.70131 1.26841 1.41931 1.18261 0.85721 0.79512 0.78184 0.79813 1.22937 1.22352 1.18603 1.20575 0.82627 0.95057 0.94632 0.93919 0.91379 0.93179 0.93384 0.92305 0.95150 0.92957 0.90919 0.91938 0.90698 0.91946 0.93071 0.74756 0.83317 0.85661 0.80223 0.79911 0.80679 0.83108 0.94451 0.98981 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.74 8.48 71.98 0.61 -3.13 16 2 C -0.09 -3.10 0.77 -52.10 -0.04 -3.14 16 3 C -0.12 -3.86 7.99 71.98 0.58 -3.29 16 4 C -0.09 -2.67 4.71 30.62 0.14 -2.53 16 5 C -0.12 -3.78 5.03 30.67 0.15 -3.63 16 6 C 0.16 5.87 3.01 44.98 0.14 6.01 16 7 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 8 C 0.14 5.21 4.43 86.38 0.38 5.60 16 9 N -0.69 -25.21 3.84 -463.05 -1.78 -26.98 16 10 C 0.50 18.35 7.90 87.66 0.69 19.04 16 11 O -0.59 -25.31 16.43 -3.03 -0.05 -25.36 16 12 C 0.07 2.15 5.82 85.63 0.50 2.65 16 13 N -0.48 -14.17 2.07 -655.06 -1.36 -15.53 16 14 C 0.12 2.73 10.28 83.42 0.86 3.59 16 15 C -0.22 -3.69 10.01 22.08 0.22 -3.47 16 16 C 0.01 0.16 10.09 22.31 0.23 0.39 16 17 C -0.28 -7.15 9.99 22.40 0.22 -6.93 16 18 C 0.50 17.00 7.40 84.82 0.63 17.63 16 19 O -0.61 -26.11 16.64 -5.51 -0.09 -26.21 16 20 N -0.59 -25.35 2.41 -675.20 -1.63 -26.97 16 21 C -0.23 -10.69 6.97 84.03 0.59 -10.11 16 22 H 0.06 3.01 5.86 -2.91 -0.02 2.99 16 23 C -0.03 -1.65 4.97 84.86 0.42 -1.23 16 24 N -0.93 -48.53 11.23 21.65 0.24 -48.28 16 25 Si 0.94 39.66 29.58 68.60 2.03 41.69 16 26 H -0.30 -13.40 7.11 99.48 0.71 -12.70 16 27 H -0.30 -12.78 7.11 99.48 0.71 -12.07 16 28 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 29 C 0.20 8.46 3.95 86.37 0.34 8.80 16 30 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.05 1.75 5.97 -2.38 -0.01 1.74 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.03 1.06 8.14 -2.39 -0.02 1.05 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.06 1.97 6.34 -2.39 -0.02 1.95 16 39 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.05 2.03 7.42 -2.39 -0.02 2.01 16 42 H 0.41 15.65 7.39 -92.71 -0.69 14.96 16 43 H 0.15 3.60 8.01 -2.39 -0.02 3.59 16 44 H 0.13 3.83 7.38 -2.39 -0.02 3.81 16 45 H 0.18 3.09 8.04 -2.91 -0.02 3.06 16 46 H 0.18 1.58 8.06 -2.91 -0.02 1.55 16 47 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 48 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 49 H 0.25 12.87 8.31 -92.71 -0.77 12.09 16 50 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 51 H 0.05 2.54 6.19 -2.39 -0.01 2.52 16 Total: -1.00 -69.64 399.96 4.26 -65.37 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: 0.24 Total: 36.02 kcal Atomic # 6 Polarization: 19.61 SS G_CDS: 6.66 Total: 26.26 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -4.52 Total: -117.77 kcal Atomic # 8 Polarization: -51.43 SS G_CDS: -0.14 Total: -51.57 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Total: -69.64 4.26 -65.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099334274.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.105 kcal (2) G-P(sol) polarization free energy of solvation -69.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds