Wall clock time and date at job start Sat Apr 11 2020 08:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.49689 * 2 1 4 4 C 1.53038 * 109.49733 * 239.90305 * 2 1 3 5 5 C 1.53041 * 109.54133 * 301.41128 * 4 2 1 6 6 C 1.53620 * 109.24168 * 298.51417 * 5 4 2 7 7 H 1.08994 * 109.74136 * 295.11341 * 6 5 4 8 8 C 1.53003 * 109.66318 * 174.54605 * 6 5 4 9 9 N 1.46501 * 109.47163 * 180.76006 * 8 6 5 10 10 C 1.34773 * 120.00122 * 180.02562 * 9 8 6 11 11 O 1.21280 * 120.00081 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00194 * 180.02562 * 10 9 8 13 13 N 1.46500 * 109.47359 * 180.02562 * 12 10 9 14 14 C 1.35760 * 119.63137 * 89.99036 * 13 12 10 15 15 C 1.35342 * 120.70469 * 180.02562 * 14 13 12 16 16 C 1.40198 * 119.95008 * 359.97438 * 15 14 13 17 17 C 1.36401 * 119.26182 * 359.97438 * 16 15 14 18 18 C 1.34666 * 119.61796 * 269.72419 * 13 12 10 19 19 O 1.22059 * 119.98846 * 359.97438 * 18 13 12 20 20 N 1.46924 * 108.54392 * 54.85522 * 6 5 4 21 21 C 1.36939 * 120.63151 * 126.36943 * 20 6 5 22 22 H 1.07992 * 120.00032 * 327.50185 * 21 20 6 23 23 C 1.38813 * 120.00126 * 147.50242 * 21 20 6 24 24 N 1.31623 * 120.00036 * 337.44950 * 23 21 20 25 25 Si 1.86794 * 119.99897 * 157.44614 * 23 21 20 26 26 H 1.48505 * 109.47179 * 240.00055 * 25 23 21 27 27 H 1.48497 * 109.47486 * 0.02562 * 25 23 21 28 28 H 1.48501 * 109.47135 * 120.00556 * 25 23 21 29 29 C 1.46924 * 118.73841 * 306.09180 * 20 6 5 30 30 H 1.09000 * 109.47458 * 299.93081 * 1 2 3 31 31 H 1.08997 * 109.47202 * 59.93300 * 1 2 3 32 32 H 1.09007 * 109.47304 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47184 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47578 * 300.06741 * 3 2 1 35 35 H 1.09009 * 109.47204 * 60.06739 * 3 2 1 36 36 H 1.08997 * 109.45881 * 61.43612 * 4 2 1 37 37 H 1.09002 * 109.46188 * 181.39332 * 4 2 1 38 38 H 1.08999 * 109.49397 * 58.58844 * 5 4 2 39 39 H 1.09001 * 109.49848 * 178.67999 * 5 4 2 40 40 H 1.09001 * 109.47071 * 300.75869 * 8 6 5 41 41 H 1.09002 * 109.46972 * 60.76377 * 8 6 5 42 42 H 0.97003 * 119.99674 * 0.02562 * 9 8 6 43 43 H 1.09010 * 109.46755 * 299.99512 * 12 10 9 44 44 H 1.08990 * 109.47659 * 59.99172 * 12 10 9 45 45 H 1.08001 * 119.64462 * 0.02562 * 14 13 12 46 46 H 1.07998 * 120.02461 * 179.97438 * 15 14 13 47 47 H 1.07999 * 120.37121 * 179.97438 * 16 15 14 48 48 H 1.08004 * 120.34705 * 180.02562 * 17 16 15 49 49 H 0.97003 * 119.99499 * 354.59714 * 24 23 21 50 50 H 1.09001 * 109.58875 * 173.64835 * 29 20 6 51 51 H 1.09001 * 109.59060 * 293.93307 * 29 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4422 0.0000 4 6 2.0408 -0.7234 -1.2481 5 6 1.5030 -2.1561 -1.2654 6 6 2.0189 -2.9055 -0.0276 7 1 3.1032 -3.0023 -0.0812 8 6 1.3797 -4.2941 0.0372 9 7 1.8605 -4.9980 1.2286 10 6 1.4295 -6.2472 1.4932 11 8 0.6432 -6.7885 0.7451 12 6 1.9236 -6.9711 2.7191 13 7 1.3126 -8.3011 2.7804 14 6 1.9319 -9.3523 2.1849 15 6 1.3866 -10.5903 2.2277 16 6 0.1698 -10.7966 2.8928 17 6 -0.4504 -9.7394 3.4913 18 6 0.1457 -8.4681 3.4314 19 8 -0.3963 -7.5143 3.9665 20 7 1.6515 -2.1379 1.1701 21 6 0.9639 -2.7309 2.1952 22 1 0.2529 -3.5162 1.9853 23 6 1.1807 -2.3226 3.5041 24 7 2.3060 -1.7218 3.8282 25 14 -0.1247 -2.6257 4.8053 26 1 -0.5631 -1.3277 5.3785 27 1 -1.2878 -3.3132 4.1891 28 1 0.4392 -3.4774 5.8832 29 6 2.0412 -0.7235 1.2498 30 1 -0.3634 0.5127 0.8906 31 1 -0.3633 0.5149 -0.8894 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1306 1.4418 -0.0005 34 1 1.6766 1.9566 -0.8893 35 1 1.6785 1.9559 0.8907 36 1 1.6987 -0.1964 -2.1388 37 1 3.1305 -0.7448 -1.2351 38 1 0.4133 -2.1358 -1.2535 39 1 1.8481 -2.6634 -2.1664 40 1 0.2956 -4.1930 0.0877 41 1 1.6508 -4.8607 -0.8537 42 1 2.4892 -4.5649 1.8271 43 1 3.0079 -7.0717 2.6692 44 1 1.6520 -6.4046 3.6097 45 1 2.8697 -9.1990 1.6716 46 1 1.8885 -11.4187 1.7499 47 1 -0.2717 -11.7815 2.9307 48 1 -1.3882 -9.8785 4.0088 49 1 3.0154 -1.6342 3.1724 50 1 1.6006 -0.2726 2.1390 51 1 3.1273 -0.6460 1.3008 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099334275.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:25:57 Heat of formation + Delta-G solvation = -37.897874 kcal Electronic energy + Delta-G solvation = -32359.365210 eV Core-core repulsion = 28258.875054 eV Total energy + Delta-G solvation = -4100.490155 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.47072 -40.84069 -39.95117 -37.98235 -36.77501 -35.49047 -35.27581 -33.79760 -31.58548 -30.90915 -30.15470 -28.32102 -28.12625 -27.27153 -25.19668 -24.67914 -23.91921 -23.55179 -21.89621 -21.48719 -19.54736 -19.21759 -18.57165 -18.33975 -18.18881 -17.37746 -17.13893 -16.68142 -16.27365 -16.04623 -15.89704 -15.62675 -15.40852 -15.37246 -15.08447 -14.87648 -14.84442 -14.49715 -14.08843 -13.67990 -13.57413 -13.49919 -13.26353 -13.05706 -12.97515 -12.83380 -12.73324 -12.71267 -12.58166 -12.35775 -12.27015 -12.10456 -11.80431 -11.69133 -11.52547 -11.38176 -11.12074 -11.07284 -10.91016 -10.70989 -10.45743 -9.95336 -8.97063 -8.78092 -8.09080 -5.34323 -0.07148 0.94687 1.44159 1.48783 1.53135 1.55214 1.70000 2.31062 2.55197 2.77394 3.24093 3.47413 3.60821 3.74612 3.78689 3.89800 3.92598 4.00209 4.08273 4.14900 4.22132 4.24166 4.32455 4.37978 4.41085 4.53707 4.55696 4.64567 4.75665 4.81652 4.85697 4.96714 4.99235 5.03133 5.05133 5.07415 5.14325 5.18312 5.24150 5.27844 5.37881 5.40835 5.44444 5.53488 5.58310 5.67971 5.72161 6.02559 6.08298 6.49100 6.57988 6.98673 7.12059 7.17902 7.82239 8.29672 9.10774 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.003427 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.014776 B = 8169.118770 C = 9374.164792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.086 4.086 3 C -0.130 4.130 4 C -0.090 4.090 5 C -0.125 4.125 6 C 0.163 3.837 7 H 0.041 0.959 8 C 0.145 3.855 9 N -0.684 5.684 10 C 0.496 3.504 11 O -0.587 6.587 12 C 0.072 3.928 13 N -0.479 5.479 14 C 0.132 3.868 15 C -0.228 4.228 16 C 0.012 3.988 17 C -0.286 4.286 18 C 0.490 3.510 19 O -0.618 6.618 20 N -0.602 5.602 21 C -0.313 4.313 22 H 0.036 0.964 23 C -0.046 4.046 24 N -0.937 5.937 25 Si 1.080 2.920 26 H -0.287 1.287 27 H -0.305 1.305 28 H -0.296 1.296 29 C 0.174 3.826 30 H 0.028 0.972 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.040 0.960 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.031 0.969 41 H 0.076 0.924 42 H 0.413 0.587 43 H 0.172 0.828 44 H 0.105 0.895 45 H 0.200 0.800 46 H 0.190 0.810 47 H 0.174 0.826 48 H 0.143 0.857 49 H 0.264 0.736 50 H 0.035 0.965 51 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.342 -12.064 -9.853 16.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.088 4.088 3 C -0.188 4.188 4 C -0.127 4.127 5 C -0.165 4.165 6 C 0.058 3.942 7 H 0.058 0.942 8 C 0.021 3.979 9 N -0.333 5.333 10 C 0.281 3.719 11 O -0.468 6.468 12 C -0.053 4.053 13 N -0.187 5.187 14 C 0.006 3.994 15 C -0.250 4.250 16 C -0.010 4.010 17 C -0.307 4.307 18 C 0.296 3.704 19 O -0.506 6.506 20 N -0.327 5.327 21 C -0.444 4.444 22 H 0.054 0.946 23 C -0.245 4.245 24 N -0.579 5.579 25 Si 0.911 3.089 26 H -0.213 1.213 27 H -0.232 1.232 28 H -0.223 1.223 29 C 0.049 3.951 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.049 0.951 41 H 0.094 0.906 42 H 0.250 0.750 43 H 0.189 0.811 44 H 0.123 0.877 45 H 0.217 0.783 46 H 0.207 0.793 47 H 0.192 0.808 48 H 0.161 0.839 49 H 0.075 0.925 50 H 0.054 0.946 51 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 5.058 -11.545 -8.448 15.174 hybrid contribution -0.015 0.377 -0.569 0.682 sum 5.043 -11.168 -9.017 15.214 Atomic orbital electron populations 1.21639 0.95243 1.00808 0.99982 1.21057 0.95659 0.95585 0.96507 1.21730 1.00814 0.94675 1.01558 1.21384 0.99964 0.94684 0.96696 1.22028 1.00640 0.96529 0.97262 1.20966 0.96122 0.89084 0.88070 0.94192 1.21193 0.97609 0.92249 0.86881 1.45871 1.46608 1.13694 1.27155 1.20964 0.81407 0.82575 0.86953 1.90651 1.36341 1.68451 1.51404 1.21873 1.01989 0.83532 0.97938 1.45116 1.20529 1.09185 1.43917 1.22786 0.98501 0.86384 0.91696 1.21216 0.98711 0.97233 1.07860 1.21908 0.92424 0.99408 0.87263 1.22073 1.05064 0.91521 1.12060 1.17856 0.80810 0.91707 0.80054 1.90960 1.63415 1.44713 1.51482 1.44227 1.66017 1.05537 1.16921 1.19730 1.17246 1.20347 0.87049 0.94635 1.26002 1.00463 1.00180 0.97895 1.70796 1.03927 1.46144 1.37066 0.83242 0.74688 0.75692 0.75291 1.21336 1.23182 1.22343 1.20833 0.94848 0.83984 0.95477 0.95289 0.91932 0.93936 0.92555 0.91095 0.94044 0.90650 0.92107 0.92805 0.89988 0.95085 0.90551 0.75028 0.81115 0.87681 0.78341 0.79286 0.80831 0.83925 0.92533 0.94622 0.97436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.15 7.99 71.98 0.57 -3.57 16 2 C -0.09 -2.87 0.77 -52.11 -0.04 -2.91 16 3 C -0.13 -3.66 8.48 71.98 0.61 -3.05 16 4 C -0.09 -2.50 4.71 30.62 0.14 -2.35 16 5 C -0.13 -3.73 5.05 30.82 0.16 -3.58 16 6 C 0.16 5.83 3.03 45.12 0.14 5.96 16 7 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 8 C 0.14 5.36 4.44 86.38 0.38 5.74 16 9 N -0.68 -25.49 3.87 -463.06 -1.79 -27.28 16 10 C 0.50 18.58 7.90 87.66 0.69 19.28 16 11 O -0.59 -25.78 16.43 -3.03 -0.05 -25.83 16 12 C 0.07 2.19 5.82 85.63 0.50 2.69 16 13 N -0.48 -14.23 2.07 -655.07 -1.36 -15.59 16 14 C 0.13 2.44 10.28 83.42 0.86 3.30 16 15 C -0.23 -3.26 10.01 22.08 0.22 -3.04 16 16 C 0.01 0.20 10.10 22.32 0.23 0.43 16 17 C -0.29 -8.12 9.99 22.40 0.22 -7.89 16 18 C 0.49 18.45 7.40 84.82 0.63 19.07 16 19 O -0.62 -30.56 16.64 -5.51 -0.09 -30.65 16 20 N -0.60 -26.34 2.22 -674.44 -1.50 -27.84 16 21 C -0.31 -16.02 6.81 84.03 0.57 -15.44 16 22 H 0.04 2.01 5.99 -2.91 -0.02 2.00 16 23 C -0.05 -2.48 4.72 84.86 0.40 -2.08 16 24 N -0.94 -52.88 12.56 21.65 0.27 -52.61 16 25 Si 1.08 55.29 29.97 68.60 2.06 57.34 16 26 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 27 H -0.30 -16.22 7.11 99.48 0.71 -15.51 16 28 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 29 C 0.17 7.40 3.38 86.36 0.29 7.69 16 30 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.04 1.67 5.97 -2.38 -0.01 1.66 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.05 1.77 6.33 -2.39 -0.02 1.75 16 39 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.03 1.37 7.42 -2.39 -0.02 1.35 16 41 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.41 15.74 7.39 -92.71 -0.68 15.05 16 43 H 0.17 3.14 8.01 -2.38 -0.02 3.13 16 44 H 0.11 3.86 7.38 -2.39 -0.02 3.85 16 45 H 0.20 1.89 8.04 -2.91 -0.02 1.87 16 46 H 0.19 1.00 8.06 -2.91 -0.02 0.98 16 47 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 48 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 49 H 0.26 14.72 6.67 -92.71 -0.62 14.10 16 50 H 0.04 1.80 6.57 -2.39 -0.02 1.78 16 51 H 0.01 0.34 7.81 -2.39 -0.02 0.32 16 Total: -1.00 -80.81 399.13 4.51 -76.29 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.39 Total: 25.89 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: 6.58 Total: 20.26 kcal Atomic # 7 Polarization: -118.94 SS G_CDS: -4.37 Total: -123.31 kcal Atomic # 8 Polarization: -56.33 SS G_CDS: -0.14 Total: -56.47 kcal Atomic # 14 Polarization: 55.29 SS G_CDS: 2.06 Total: 57.34 kcal Total: -80.81 4.51 -76.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099334275.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.395 kcal (2) G-P(sol) polarization free energy of solvation -80.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds