Wall clock time and date at job start Sat Apr 11 2020 08:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35690 * 116.99722 * 2 1 4 4 C 1.38893 * 119.62197 * 180.02562 * 3 2 1 5 5 C 1.39573 * 118.94663 * 180.02562 * 4 3 2 6 6 C 1.48161 * 120.89518 * 179.97438 * 5 4 3 7 7 O 1.21511 * 119.99373 * 9.59687 * 6 5 4 8 8 N 1.34768 * 120.00404 * 189.59268 * 6 5 4 9 9 C 1.48120 * 127.03576 * 185.82796 * 8 6 5 10 10 C 1.54600 * 103.42442 * 219.29029 * 9 8 6 11 11 H 1.08997 * 110.57783 * 81.16688 * 10 9 8 12 12 C 1.53001 * 110.98864 * 204.37603 * 10 9 8 13 13 C 1.54617 * 102.91019 * 322.86655 * 10 9 8 14 14 H 1.08996 * 110.41663 * 262.75771 * 13 10 9 15 15 C 1.53007 * 110.32647 * 140.58889 * 13 10 9 16 16 C 1.53004 * 109.47266 * 177.92521 * 15 13 10 17 17 N 1.46499 * 109.46825 * 180.02562 * 16 15 13 18 18 C 1.36933 * 119.99748 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00376 * 359.97438 * 18 17 16 20 20 C 1.38812 * 120.00444 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99745 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00529 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46790 * 89.99794 * 22 20 18 24 24 H 1.48494 * 109.47249 * 210.00413 * 22 20 18 25 25 H 1.48505 * 109.46918 * 330.00464 * 22 20 18 26 26 C 1.47491 * 127.03283 * 6.15037 * 8 6 5 27 27 C 1.39971 * 118.21511 * 359.95879 * 5 4 3 28 28 C 1.37976 * 119.13271 * 0.02562 * 27 5 4 29 29 C 1.50709 * 119.50792 * 180.02562 * 28 27 5 30 30 N 1.31908 * 120.98218 * 0.02562 * 28 27 5 31 31 H 1.08994 * 109.47658 * 60.00360 * 1 2 3 32 32 H 1.08998 * 109.46800 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47251 * 299.99916 * 1 2 3 34 34 H 1.07995 * 120.52983 * 359.97066 * 4 3 2 35 35 H 1.08999 * 110.66295 * 337.76929 * 9 8 6 36 36 H 1.08994 * 110.66256 * 100.89200 * 9 8 6 37 37 H 1.09001 * 109.46620 * 173.65367 * 12 10 9 38 38 H 1.08997 * 109.47113 * 293.64924 * 12 10 9 39 39 H 1.08996 * 109.47079 * 53.64947 * 12 10 9 40 40 H 1.08995 * 109.47424 * 297.93000 * 15 13 10 41 41 H 1.09006 * 109.46529 * 57.92594 * 15 13 10 42 42 H 1.09000 * 109.46984 * 300.00250 * 16 15 13 43 43 H 1.08998 * 109.46739 * 60.00303 * 16 15 13 44 44 H 0.96999 * 120.00602 * 359.97438 * 17 16 15 45 45 H 0.96991 * 120.00158 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.90972 * 273.87533 * 26 8 6 47 47 H 1.08996 * 109.91293 * 34.96061 * 26 8 6 48 48 H 1.07996 * 120.43019 * 180.29664 * 27 5 4 49 49 H 1.08995 * 109.47170 * 89.99776 * 29 28 27 50 50 H 1.09000 * 109.46447 * 209.99824 * 29 28 27 51 51 H 1.08993 * 109.47112 * 329.99635 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4324 1.2726 -0.0005 5 6 4.0513 2.5237 0.0000 6 6 5.5282 2.6418 0.0000 7 8 6.2164 1.6560 -0.1759 8 7 6.1082 3.8425 0.1951 9 6 7.5522 4.1605 0.1075 10 6 7.7734 5.1494 1.2751 11 1 7.8838 4.6118 2.2168 12 6 8.9903 6.0399 1.0160 13 6 6.4726 5.9852 1.2711 14 1 6.6226 6.9195 0.7301 15 6 6.0188 6.2692 2.7044 16 6 4.7608 7.1397 2.6782 17 7 4.3268 7.4120 4.0507 18 6 3.2137 8.1765 4.2777 19 1 2.6559 8.5791 3.4450 20 6 2.8020 8.4342 5.5781 21 7 3.4819 7.9441 6.5929 22 14 1.2839 9.4777 5.8879 23 1 0.0854 8.6029 5.9459 24 1 1.4336 10.1988 7.1774 25 1 1.1260 10.4611 4.7863 26 6 5.4357 5.1075 0.5458 27 6 3.2392 3.6637 0.0002 28 6 1.8679 3.5116 0.0004 29 6 0.9855 4.7333 0.0000 30 7 1.3177 2.3127 0.0009 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 4.0231 0.3685 -0.0005 35 1 8.1531 3.2619 0.2467 36 1 7.7843 4.6359 -0.8455 37 1 9.0574 6.7991 1.7953 38 1 9.8943 5.4310 1.0233 39 1 8.8861 6.5240 0.0451 40 1 5.7993 5.3284 3.2092 41 1 6.8115 6.7922 3.2395 42 1 4.9805 8.0805 2.1735 43 1 3.9683 6.6166 2.1431 44 1 4.8274 7.0502 4.7985 45 1 3.1941 8.1238 7.5016 46 1 5.0928 5.6089 -0.3593 47 1 4.5892 4.9081 1.2028 48 1 3.6803 4.6495 -0.0042 49 1 0.7727 5.0275 -1.0277 50 1 0.0514 4.5069 0.5140 51 1 1.4942 5.5491 0.5135 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104593541.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:26:11 Heat of formation + Delta-G solvation = -14.894955 kcal Electronic energy + Delta-G solvation = -31090.298399 eV Core-core repulsion = 26990.805725 eV Total energy + Delta-G solvation = -4099.492674 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.23132 -40.13181 -38.36960 -37.92523 -35.15075 -33.75452 -33.05943 -32.42109 -31.67172 -30.20510 -28.58238 -27.35500 -27.05465 -26.53471 -24.81089 -23.62726 -22.81002 -22.45833 -20.71141 -20.18088 -19.78753 -18.33044 -17.56326 -17.10513 -16.53120 -16.27625 -16.18737 -15.72399 -15.58168 -14.79830 -14.68391 -14.53287 -14.34723 -14.18566 -13.79634 -13.67350 -13.48378 -13.32106 -13.07220 -12.86306 -12.63311 -12.57513 -12.45624 -12.33460 -12.16094 -11.97939 -11.76089 -11.36305 -11.21097 -11.18627 -11.04339 -10.86641 -10.63573 -10.52872 -10.38244 -10.33698 -10.03419 -10.00274 -9.72408 -9.69842 -8.91474 -8.89423 -8.60054 -6.95354 -5.79122 -3.08179 0.52505 0.95078 2.51192 2.68262 2.98713 3.41259 3.46122 3.48187 3.60135 3.95604 4.07806 4.37943 4.44019 4.53063 4.67902 4.73502 4.85735 4.89680 5.00760 5.06126 5.12305 5.16661 5.29452 5.32095 5.37135 5.38353 5.43428 5.44757 5.47516 5.49061 5.53759 5.56813 5.65409 5.70507 5.76269 5.82745 5.84403 5.95528 5.97707 6.01076 6.06378 6.19063 6.22726 6.30779 6.37804 6.75681 6.81403 7.00395 7.26170 7.63856 7.66211 7.87474 8.39587 9.50693 10.08882 10.42678 11.43767 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007049 B = 0.003645 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3971.455687 B = 7679.342141 C =10906.024039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.306 6.306 3 C 0.321 3.679 4 C -0.142 4.142 5 C -0.048 4.048 6 C 0.581 3.419 7 O -0.532 6.532 8 N -0.610 5.610 9 C 0.109 3.891 10 C -0.103 4.103 11 H 0.086 0.914 12 C -0.140 4.140 13 C -0.092 4.092 14 H 0.090 0.910 15 C -0.120 4.120 16 C 0.153 3.847 17 N -0.734 5.734 18 C -0.240 4.240 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.086 3.914 27 C -0.199 4.199 28 C 0.171 3.829 29 C -0.109 4.109 30 N -0.526 5.526 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.152 0.848 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.019 0.981 43 H 0.016 0.984 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.075 0.925 47 H 0.097 0.903 48 H 0.165 0.835 49 H 0.081 0.919 50 H 0.081 0.919 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.743 -9.634 -17.415 20.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.213 6.213 3 C 0.142 3.858 4 C -0.163 4.163 5 C -0.058 4.058 6 C 0.370 3.630 7 O -0.409 6.409 8 N -0.343 5.343 9 C -0.013 4.013 10 C -0.123 4.123 11 H 0.104 0.896 12 C -0.198 4.198 13 C -0.112 4.112 14 H 0.108 0.892 15 C -0.158 4.158 16 C 0.025 3.975 17 N -0.378 5.378 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.036 4.036 27 C -0.219 4.219 28 C 0.035 3.965 29 C -0.166 4.166 30 N -0.251 5.251 31 H 0.077 0.923 32 H 0.114 0.886 33 H 0.079 0.921 34 H 0.170 0.830 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.037 0.963 43 H 0.034 0.966 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.093 0.907 47 H 0.115 0.885 48 H 0.182 0.818 49 H 0.100 0.900 50 H 0.100 0.900 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.128 -10.499 -17.555 20.565 hybrid contribution -0.187 0.608 0.586 0.865 sum 1.940 -9.892 -16.968 19.737 Atomic orbital electron populations 1.22876 0.77022 1.02972 1.02626 1.86249 1.23055 1.24141 1.87860 1.19582 0.88869 0.84733 0.92620 1.21013 0.91915 0.98797 1.04596 1.19939 0.93260 0.93363 0.99250 1.17670 0.86705 0.81679 0.76907 1.90776 1.64359 1.35780 1.50012 1.48579 1.09210 1.08103 1.68439 1.22548 0.80855 0.99231 0.98625 1.22313 0.95047 0.96104 0.98816 0.89593 1.21722 0.96518 0.99403 1.02124 1.22199 0.93339 0.98083 0.97547 0.89165 1.21830 0.99102 1.00823 0.93999 1.20690 0.92587 0.95388 0.88843 1.42362 1.32064 1.62083 1.01246 1.19206 1.02492 1.23618 0.91844 0.91190 1.24744 0.99360 1.01235 0.95581 1.69656 1.40908 1.49604 0.97966 0.86215 0.82904 0.79931 0.77299 1.21702 1.21770 1.20720 1.22892 0.97202 0.83777 0.99750 1.22953 0.94307 1.00694 1.03953 1.20961 0.91769 0.91837 0.91920 1.20826 0.99526 0.92889 1.03352 1.66999 1.41272 0.98537 1.18329 0.92264 0.88582 0.92074 0.83024 0.89655 0.90637 0.91664 0.92462 0.92369 0.91816 0.91258 0.96350 0.96643 0.78312 0.93496 0.90677 0.88496 0.81815 0.90023 0.90047 0.89442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.38 101.05 1.05 1.41 16 2 O -0.31 -3.79 10.47 -18.77 -0.20 -3.98 16 3 C 0.32 4.34 7.49 -17.16 -0.13 4.22 16 4 C -0.14 -1.93 9.61 -38.84 -0.37 -2.30 16 5 C -0.05 -0.64 5.88 -104.67 -0.62 -1.26 16 6 C 0.58 8.25 7.84 -12.19 -0.10 8.15 16 7 O -0.53 -8.93 16.67 5.36 0.09 -8.84 16 8 N -0.61 -7.28 3.29 -170.97 -0.56 -7.84 16 9 C 0.11 1.10 6.55 -2.31 -0.02 1.09 16 10 C -0.10 -1.00 3.18 -88.93 -0.28 -1.28 16 11 H 0.09 0.93 7.86 -51.93 -0.41 0.52 16 12 C -0.14 -1.11 9.17 37.16 0.34 -0.77 16 13 C -0.09 -0.98 2.61 -89.24 -0.23 -1.21 16 14 H 0.09 0.87 7.86 -51.93 -0.41 0.46 16 15 C -0.12 -1.71 4.53 -26.73 -0.12 -1.83 16 16 C 0.15 2.76 6.08 -4.04 -0.02 2.73 16 17 N -0.73 -17.86 5.60 -59.91 -0.34 -18.20 16 18 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 19 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -27.88 13.06 55.49 0.72 -27.15 16 22 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 26 C 0.09 0.91 4.20 -2.98 -0.01 0.90 16 27 C -0.20 -2.40 8.05 -39.03 -0.31 -2.72 16 28 C 0.17 2.11 6.77 -82.65 -0.56 1.55 16 29 C -0.11 -1.08 10.16 36.01 0.37 -0.71 16 30 N -0.53 -7.03 9.09 -9.59 -0.09 -7.12 16 31 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.58 8.10 -51.93 -0.42 0.15 16 34 H 0.15 2.00 7.77 -52.49 -0.41 1.59 16 35 H 0.08 0.92 7.81 -51.93 -0.41 0.52 16 36 H 0.08 0.64 8.02 -51.93 -0.42 0.23 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.41 8.11 -51.93 -0.42 -0.01 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.02 0.27 6.88 -51.93 -0.36 -0.08 16 44 H 0.38 9.96 7.67 -40.82 -0.31 9.65 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 46 H 0.08 0.65 7.45 -51.93 -0.39 0.27 16 47 H 0.10 1.17 4.55 -51.93 -0.24 0.93 16 48 H 0.16 1.70 3.66 -52.49 -0.19 1.50 16 49 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.09 0.84 8.07 -51.93 -0.42 0.42 16 LS Contribution 410.25 15.07 6.18 6.18 Total: -1.00 -33.38 410.25 -8.62 -42.00 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -8.14 Total: 7.19 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -1.27 Total: 0.84 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: -0.26 Total: -60.31 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.11 Total: -12.82 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.38 -8.62 -42.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104593541.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.108 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds