Wall clock time and date at job start Sat Apr 11 2020 08:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35690 * 116.99722 * 2 1 4 4 C 1.38893 * 119.62197 * 180.02562 * 3 2 1 5 5 C 1.39573 * 118.94663 * 180.02562 * 4 3 2 6 6 C 1.48161 * 120.89518 * 179.97438 * 5 4 3 7 7 O 1.21511 * 119.99373 * 9.59687 * 6 5 4 8 8 N 1.34768 * 120.00404 * 189.59268 * 6 5 4 9 9 C 1.48120 * 127.03576 * 185.82796 * 8 6 5 10 10 C 1.54600 * 103.42442 * 219.29029 * 9 8 6 11 11 H 1.08997 * 110.57783 * 81.16688 * 10 9 8 12 12 C 1.53001 * 110.98864 * 204.37603 * 10 9 8 13 13 C 1.54617 * 102.91019 * 322.86655 * 10 9 8 14 14 H 1.08996 * 110.41663 * 262.75771 * 13 10 9 15 15 C 1.53007 * 110.32647 * 140.58889 * 13 10 9 16 16 C 1.53004 * 109.47266 * 177.92521 * 15 13 10 17 17 N 1.46499 * 109.46825 * 180.02562 * 16 15 13 18 18 C 1.36933 * 119.99748 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00376 * 359.97438 * 18 17 16 20 20 C 1.38812 * 120.00444 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99745 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00529 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46790 * 89.99794 * 22 20 18 24 24 H 1.48494 * 109.47249 * 210.00413 * 22 20 18 25 25 H 1.48505 * 109.46918 * 330.00464 * 22 20 18 26 26 C 1.47491 * 127.03283 * 6.15037 * 8 6 5 27 27 C 1.39971 * 118.21511 * 359.95879 * 5 4 3 28 28 C 1.37976 * 119.13271 * 0.02562 * 27 5 4 29 29 C 1.50709 * 119.50792 * 180.02562 * 28 27 5 30 30 N 1.31908 * 120.98218 * 0.02562 * 28 27 5 31 31 H 1.08994 * 109.47658 * 60.00360 * 1 2 3 32 32 H 1.08998 * 109.46800 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47251 * 299.99916 * 1 2 3 34 34 H 1.07995 * 120.52983 * 359.97066 * 4 3 2 35 35 H 1.08999 * 110.66295 * 337.76929 * 9 8 6 36 36 H 1.08994 * 110.66256 * 100.89200 * 9 8 6 37 37 H 1.09001 * 109.46620 * 173.65367 * 12 10 9 38 38 H 1.08997 * 109.47113 * 293.64924 * 12 10 9 39 39 H 1.08996 * 109.47079 * 53.64947 * 12 10 9 40 40 H 1.08995 * 109.47424 * 297.93000 * 15 13 10 41 41 H 1.09006 * 109.46529 * 57.92594 * 15 13 10 42 42 H 1.09000 * 109.46984 * 300.00250 * 16 15 13 43 43 H 1.08998 * 109.46739 * 60.00303 * 16 15 13 44 44 H 0.96999 * 120.00602 * 359.97438 * 17 16 15 45 45 H 0.96991 * 120.00158 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.90972 * 273.87533 * 26 8 6 47 47 H 1.08996 * 109.91293 * 34.96061 * 26 8 6 48 48 H 1.07996 * 120.43019 * 180.29664 * 27 5 4 49 49 H 1.08995 * 109.47170 * 89.99776 * 29 28 27 50 50 H 1.09000 * 109.46447 * 209.99824 * 29 28 27 51 51 H 1.08993 * 109.47112 * 329.99635 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4324 1.2726 -0.0005 5 6 4.0513 2.5237 0.0000 6 6 5.5282 2.6418 0.0000 7 8 6.2164 1.6560 -0.1759 8 7 6.1082 3.8425 0.1951 9 6 7.5522 4.1605 0.1075 10 6 7.7734 5.1494 1.2751 11 1 7.8838 4.6118 2.2168 12 6 8.9903 6.0399 1.0160 13 6 6.4726 5.9852 1.2711 14 1 6.6226 6.9195 0.7301 15 6 6.0188 6.2692 2.7044 16 6 4.7608 7.1397 2.6782 17 7 4.3268 7.4120 4.0507 18 6 3.2137 8.1765 4.2777 19 1 2.6559 8.5791 3.4450 20 6 2.8020 8.4342 5.5781 21 7 3.4819 7.9441 6.5929 22 14 1.2839 9.4777 5.8879 23 1 0.0854 8.6029 5.9459 24 1 1.4336 10.1988 7.1774 25 1 1.1260 10.4611 4.7863 26 6 5.4357 5.1075 0.5458 27 6 3.2392 3.6637 0.0002 28 6 1.8679 3.5116 0.0004 29 6 0.9855 4.7333 0.0000 30 7 1.3177 2.3127 0.0009 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 4.0231 0.3685 -0.0005 35 1 8.1531 3.2619 0.2467 36 1 7.7843 4.6359 -0.8455 37 1 9.0574 6.7991 1.7953 38 1 9.8943 5.4310 1.0233 39 1 8.8861 6.5240 0.0451 40 1 5.7993 5.3284 3.2092 41 1 6.8115 6.7922 3.2395 42 1 4.9805 8.0805 2.1735 43 1 3.9683 6.6166 2.1431 44 1 4.8274 7.0502 4.7985 45 1 3.1941 8.1238 7.5016 46 1 5.0928 5.6089 -0.3593 47 1 4.5892 4.9081 1.2028 48 1 3.6803 4.6495 -0.0042 49 1 0.7727 5.0275 -1.0277 50 1 0.0514 4.5069 0.5140 51 1 1.4942 5.5491 0.5135 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104593541.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:26:10 Heat of formation + Delta-G solvation = -37.322298 kcal Electronic energy + Delta-G solvation = -31091.270922 eV Core-core repulsion = 26990.805725 eV Total energy + Delta-G solvation = -4100.465196 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.20982 -41.08887 -39.35694 -38.91959 -36.78566 -34.82127 -34.20574 -33.70141 -32.70612 -31.70927 -29.42144 -28.63185 -27.84983 -27.44408 -26.14213 -24.91977 -23.84242 -23.73885 -21.93057 -21.06891 -20.76630 -19.28285 -19.07602 -18.53704 -17.49482 -17.25974 -17.12781 -16.70174 -16.61417 -16.51413 -15.84398 -15.59832 -15.31158 -15.23747 -15.05787 -15.02520 -14.66017 -14.41160 -14.31031 -13.74026 -13.66344 -13.41575 -13.34917 -13.20539 -13.04000 -13.00341 -12.84070 -12.74612 -12.54643 -12.40745 -12.27565 -12.08173 -12.06835 -11.83205 -11.62233 -11.49691 -11.43330 -11.20411 -11.04687 -10.87237 -10.71181 -9.85943 -9.55654 -8.93813 -7.90815 -5.18867 -0.49715 -0.02664 1.50671 1.51842 1.54947 1.60096 1.65040 2.08623 2.59683 2.60715 3.03158 3.14406 3.43895 3.48684 3.57788 3.67302 3.79082 3.88240 4.00962 4.14667 4.28455 4.30229 4.37780 4.39718 4.41715 4.44890 4.48025 4.50236 4.52517 4.66557 4.70705 4.77525 4.78617 4.81622 4.82140 4.84249 4.89177 4.94335 4.96350 5.05150 5.16266 5.21403 5.31983 5.35233 5.41850 5.44687 5.56012 5.58074 6.08177 6.26371 6.31821 6.66027 6.82836 7.37876 8.16335 8.36501 9.33246 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007049 B = 0.003645 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3971.455687 B = 7679.342141 C =10906.024039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.317 6.317 3 C 0.312 3.688 4 C -0.157 4.157 5 C -0.057 4.057 6 C 0.577 3.423 7 O -0.568 6.568 8 N -0.607 5.607 9 C 0.108 3.892 10 C -0.097 4.097 11 H 0.068 0.932 12 C -0.136 4.136 13 C -0.082 4.082 14 H 0.114 0.886 15 C -0.107 4.107 16 C 0.149 3.851 17 N -0.751 5.751 18 C -0.237 4.237 19 H 0.082 0.918 20 C -0.079 4.079 21 N -0.973 5.973 22 Si 0.969 3.031 23 H -0.289 1.289 24 H -0.300 1.300 25 H -0.264 1.264 26 C 0.082 3.918 27 C -0.194 4.194 28 C 0.163 3.837 29 C -0.106 4.106 30 N -0.535 5.535 31 H 0.062 0.938 32 H 0.125 0.875 33 H 0.055 0.945 34 H 0.147 0.853 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.029 0.971 43 H 0.030 0.970 44 H 0.370 0.630 45 H 0.249 0.751 46 H 0.108 0.892 47 H 0.083 0.917 48 H 0.184 0.816 49 H 0.104 0.896 50 H 0.077 0.923 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.383 -8.028 -19.511 21.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.225 6.225 3 C 0.133 3.867 4 C -0.179 4.179 5 C -0.067 4.067 6 C 0.366 3.634 7 O -0.449 6.449 8 N -0.338 5.338 9 C -0.013 4.013 10 C -0.116 4.116 11 H 0.086 0.914 12 C -0.193 4.193 13 C -0.101 4.101 14 H 0.133 0.867 15 C -0.145 4.145 16 C 0.023 3.977 17 N -0.393 5.393 18 C -0.369 4.369 19 H 0.100 0.900 20 C -0.271 4.271 21 N -0.625 5.625 22 Si 0.798 3.202 23 H -0.216 1.216 24 H -0.227 1.227 25 H -0.189 1.189 26 C -0.039 4.039 27 C -0.214 4.214 28 C 0.027 3.973 29 C -0.163 4.163 30 N -0.260 5.260 31 H 0.080 0.920 32 H 0.143 0.857 33 H 0.074 0.926 34 H 0.164 0.836 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.047 0.953 43 H 0.048 0.952 44 H 0.201 0.799 45 H 0.057 0.943 46 H 0.126 0.874 47 H 0.102 0.898 48 H 0.200 0.800 49 H 0.122 0.878 50 H 0.096 0.904 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.769 -8.869 -19.705 21.681 hybrid contribution -0.060 0.093 1.194 1.199 sum 1.709 -8.776 -18.511 20.557 Atomic orbital electron populations 1.23108 0.75384 1.04877 1.02452 1.86239 1.24732 1.23773 1.87717 1.19703 0.88967 0.85239 0.92767 1.21070 0.92243 0.98990 1.05609 1.20009 0.93166 0.93836 0.99714 1.17809 0.86904 0.81904 0.76776 1.90750 1.65066 1.37012 1.52038 1.48650 1.10228 1.07833 1.67115 1.22724 0.79618 0.99048 0.99960 1.22238 0.95474 0.95977 0.97922 0.91362 1.21703 0.95748 0.99005 1.02871 1.22137 0.93603 0.99275 0.95111 0.86743 1.21669 0.97329 0.99008 0.96452 1.20934 0.94396 0.96526 0.85830 1.42662 1.31471 1.61728 1.03412 1.19677 1.02730 1.22447 0.92070 0.90006 1.25551 1.02526 1.03341 0.95669 1.69820 1.42868 1.51789 0.97992 0.85197 0.79414 0.78526 0.77022 1.21641 1.22712 1.18899 1.23026 0.96668 0.83288 1.00932 1.23149 0.94141 1.00973 1.03138 1.21468 0.92386 0.92309 0.91166 1.20899 0.98817 0.91766 1.04812 1.67064 1.41442 0.98852 1.18687 0.91970 0.85707 0.92633 0.83571 0.90728 0.88032 0.92125 0.91723 0.90625 0.93660 0.91764 0.95291 0.95242 0.79855 0.94258 0.87447 0.89848 0.79955 0.87778 0.90421 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.38 113.37 1.18 1.81 16 2 O -0.32 -7.91 10.47 -90.09 -0.94 -8.85 16 3 C 0.31 8.54 7.49 84.80 0.63 9.18 16 4 C -0.16 -4.42 9.61 22.75 0.22 -4.20 16 5 C -0.06 -1.52 5.88 -19.90 -0.12 -1.64 16 6 C 0.58 16.27 7.84 86.88 0.68 16.95 16 7 O -0.57 -19.52 16.67 -3.75 -0.06 -19.58 16 8 N -0.61 -13.53 3.29 -813.12 -2.68 -16.21 16 9 C 0.11 1.95 6.55 86.61 0.57 2.52 16 10 C -0.10 -1.67 3.18 -9.70 -0.03 -1.70 16 11 H 0.07 1.43 7.86 -2.39 -0.02 1.42 16 12 C -0.14 -1.76 9.17 71.98 0.66 -1.10 16 13 C -0.08 -1.51 2.61 -9.90 -0.03 -1.54 16 14 H 0.11 1.67 7.86 -2.39 -0.02 1.65 16 15 C -0.11 -2.90 4.53 30.60 0.14 -2.76 16 16 C 0.15 5.09 6.08 86.38 0.53 5.62 16 17 N -0.75 -36.11 5.60 -343.45 -1.92 -38.03 16 18 C -0.24 -12.62 9.99 84.03 0.84 -11.78 16 19 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 20 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 21 N -0.97 -59.05 13.06 21.65 0.28 -58.77 16 22 Si 0.97 44.85 29.55 68.60 2.03 46.88 16 23 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 24 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 25 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 26 C 0.08 1.53 4.20 86.53 0.36 1.89 16 27 C -0.19 -4.43 8.05 22.63 0.18 -4.25 16 28 C 0.16 3.82 6.77 42.49 0.29 4.11 16 29 C -0.11 -1.86 10.16 71.24 0.72 -1.14 16 30 N -0.53 -14.05 9.09 -297.16 -2.70 -16.75 16 31 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 32 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.03 8.10 -2.38 -0.02 1.01 16 34 H 0.15 4.12 7.77 -2.91 -0.02 4.10 16 35 H 0.07 1.55 7.81 -2.39 -0.02 1.53 16 36 H 0.10 1.37 8.02 -2.39 -0.02 1.35 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.07 0.74 8.11 -2.39 -0.02 0.72 16 40 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 42 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.03 0.95 6.88 -2.39 -0.02 0.93 16 44 H 0.37 19.48 7.67 -92.71 -0.71 18.77 16 45 H 0.25 14.72 8.31 -92.72 -0.77 13.95 16 46 H 0.11 1.38 7.45 -2.39 -0.02 1.36 16 47 H 0.08 1.83 4.55 -2.39 -0.01 1.81 16 48 H 0.18 3.30 3.66 -2.91 -0.01 3.29 16 49 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 51 H 0.09 1.54 8.07 -2.39 -0.02 1.52 16 Total: -1.00 -73.12 410.25 1.52 -71.59 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: 0.23 Total: 31.71 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 7.29 Total: 8.01 kcal Atomic # 7 Polarization: -122.74 SS G_CDS: -7.02 Total: -129.76 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -1.01 Total: -28.43 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -73.12 1.52 -71.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104593541.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.270 kcal (2) G-P(sol) polarization free energy of solvation -73.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds