Wall clock time and date at job start Sat Apr 11 2020 08:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35681 * 117.00248 * 2 1 4 4 C 1.38890 * 119.62844 * 180.02562 * 3 2 1 5 5 C 1.39567 * 118.95164 * 179.97438 * 4 3 2 6 6 C 1.48161 * 120.89319 * 179.97438 * 5 4 3 7 7 O 1.21510 * 119.99981 * 320.33419 * 6 5 4 8 8 N 1.34775 * 119.99911 * 140.33399 * 6 5 4 9 9 C 1.46930 * 120.63187 * 354.20925 * 8 6 5 10 10 C 1.53186 * 108.77553 * 233.58417 * 9 8 6 11 11 C 1.53042 * 109.31369 * 305.36357 * 10 9 8 12 12 H 1.09001 * 109.45589 * 181.38356 * 11 10 9 13 13 C 1.52997 * 109.45980 * 301.34490 * 11 10 9 14 14 C 1.53045 * 109.53721 * 61.36492 * 11 10 9 15 15 H 1.09000 * 109.52312 * 58.60421 * 14 11 10 16 16 C 1.53001 * 109.49423 * 178.68427 * 14 11 10 17 17 N 1.46500 * 109.46608 * 184.83872 * 16 14 11 18 18 C 1.36936 * 119.99895 * 180.02562 * 17 16 14 19 19 H 1.08004 * 119.99955 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00194 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00297 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00159 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47476 * 179.97438 * 22 20 18 24 24 H 1.48505 * 109.46742 * 299.99582 * 22 20 18 25 25 H 1.48499 * 109.47125 * 59.99082 * 22 20 18 26 26 C 1.46920 * 120.63192 * 174.18104 * 8 6 5 27 27 C 1.39966 * 118.21344 * 0.27547 * 5 4 3 28 28 C 1.37983 * 119.13446 * 359.47426 * 27 5 4 29 29 C 1.50705 * 119.51019 * 180.25255 * 28 27 5 30 30 N 1.31903 * 120.97568 * 0.53984 * 28 27 5 31 31 H 1.09000 * 109.47331 * 60.00252 * 1 2 3 32 32 H 1.09012 * 109.46955 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47259 * 299.99898 * 1 2 3 34 34 H 1.08001 * 120.52310 * 0.02562 * 4 3 2 35 35 H 1.09006 * 109.58235 * 353.37264 * 9 8 6 36 36 H 1.09001 * 109.58946 * 113.79309 * 9 8 6 37 37 H 1.08999 * 109.49813 * 65.31525 * 10 9 8 38 38 H 1.09000 * 109.49672 * 185.40646 * 10 9 8 39 39 H 1.08999 * 109.47359 * 180.02562 * 13 11 10 40 40 H 1.09006 * 109.46586 * 300.06897 * 13 11 10 41 41 H 1.08999 * 109.47476 * 60.06411 * 13 11 10 42 42 H 1.08999 * 109.47303 * 64.84053 * 16 14 11 43 43 H 1.09002 * 109.47032 * 304.83295 * 16 14 11 44 44 H 0.97000 * 120.00088 * 359.97438 * 17 16 14 45 45 H 0.96991 * 120.00490 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.58981 * 6.62967 * 26 8 6 47 47 H 1.08996 * 109.59127 * 246.20320 * 26 8 6 48 48 H 1.08001 * 120.43443 * 179.70257 * 27 5 4 49 49 H 1.09007 * 109.46842 * 270.27749 * 29 28 27 50 50 H 1.08997 * 109.47345 * 30.28317 * 29 28 27 51 51 H 1.08998 * 109.46886 * 150.28609 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4325 1.2725 -0.0005 5 6 4.0514 2.5235 -0.0011 6 6 5.5283 2.6414 -0.0011 7 8 6.1984 1.8827 0.6710 8 7 6.1285 3.5904 -0.7465 9 6 5.3440 4.4320 -1.6604 10 6 5.9629 4.3506 -3.0593 11 6 7.4453 4.7221 -2.9794 12 1 7.8823 4.6889 -3.9774 13 6 7.5868 6.1344 -2.4080 14 6 8.1735 3.7291 -2.0705 15 1 8.0528 2.7196 -2.4634 16 6 9.6614 4.0819 -2.0174 17 7 10.3767 3.0655 -1.2419 18 6 11.7294 3.1716 -1.0572 19 1 12.2690 4.0044 -1.4836 20 6 12.4073 2.2083 -0.3229 21 7 11.7500 1.1931 0.1964 22 14 14.2528 2.3527 -0.0715 23 1 14.7327 1.2069 0.7421 24 1 14.9342 2.3433 -1.3910 25 1 14.5583 3.6230 0.6343 26 6 7.5796 3.8035 -0.6604 27 6 3.2394 3.6635 0.0049 28 6 1.8680 3.5115 0.0000 29 6 0.9857 4.7333 0.0005 30 7 1.3178 2.3127 0.0004 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 4.0230 0.3683 -0.0014 35 1 4.3151 4.0736 -1.6945 36 1 5.3620 5.4648 -1.3123 37 1 5.8624 3.3354 -3.4431 38 1 5.4493 5.0441 -3.7252 39 1 8.6426 6.3994 -2.3514 40 1 7.0681 6.8417 -3.0552 41 1 7.1504 6.1679 -1.4098 42 1 9.7872 5.0556 -1.5438 43 1 10.0632 4.1157 -3.0301 44 1 9.8921 2.3178 -0.8586 45 1 12.2236 0.5202 0.7098 46 1 8.0260 3.0306 -0.0348 47 1 7.7800 4.7850 -0.2308 48 1 3.6805 4.6493 0.0095 49 1 0.7737 5.0278 1.0284 50 1 1.4941 5.5488 -0.5137 51 1 0.0511 4.5067 -0.5125 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133065442.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:26:38 Heat of formation + Delta-G solvation = -21.232308 kcal Electronic energy + Delta-G solvation = -31279.311011 eV Core-core repulsion = 27179.543529 eV Total energy + Delta-G solvation = -4099.767482 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.30428 -40.16266 -38.43900 -37.87291 -35.02929 -33.70868 -33.23519 -32.19074 -31.75297 -29.82312 -28.69284 -27.70353 -26.96895 -25.95993 -25.04912 -23.46180 -23.25522 -22.77754 -21.20228 -19.99042 -18.64295 -17.95740 -17.63529 -16.96829 -16.49344 -16.29840 -16.18035 -15.84740 -15.13881 -15.00586 -14.91844 -14.53124 -14.39417 -14.17147 -13.95662 -13.54962 -13.54172 -13.29298 -13.01873 -12.81684 -12.76522 -12.69140 -12.47501 -12.39848 -12.06226 -11.92879 -11.66207 -11.34420 -11.23110 -11.08221 -10.90420 -10.77625 -10.64200 -10.36895 -10.30099 -10.19151 -10.07958 -9.95279 -9.64707 -9.54567 -8.81873 -8.70753 -8.51587 -6.86084 -5.68681 -2.98690 0.56765 0.81168 2.53946 2.77846 3.03135 3.44678 3.48091 3.52028 3.53897 3.80878 4.15039 4.58189 4.59847 4.66640 4.72961 4.79321 4.83856 4.90456 4.96622 5.01277 5.08440 5.15761 5.20758 5.22376 5.26306 5.31007 5.33111 5.48445 5.55634 5.59016 5.61821 5.65673 5.68137 5.78693 5.83092 5.87583 5.93819 6.00218 6.03125 6.14370 6.31620 6.33885 6.35600 6.55317 6.62021 6.78198 6.90006 6.91082 7.38031 7.50415 7.74583 8.11962 8.48939 9.59756 10.17796 10.51829 11.53487 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014275 B = 0.002586 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.958973 B =10826.563099 C =12202.422794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.304 6.304 3 C 0.326 3.674 4 C -0.145 4.145 5 C -0.036 4.036 6 C 0.554 3.446 7 O -0.511 6.511 8 N -0.599 5.599 9 C 0.095 3.905 10 C -0.129 4.129 11 C -0.085 4.085 12 H 0.074 0.926 13 C -0.153 4.153 14 C -0.102 4.102 15 H 0.074 0.926 16 C 0.161 3.839 17 N -0.733 5.733 18 C -0.243 4.243 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.929 5.929 22 Si 0.906 3.094 23 H -0.291 1.291 24 H -0.287 1.287 25 H -0.286 1.286 26 C 0.120 3.880 27 C -0.185 4.185 28 C 0.163 3.837 29 C -0.104 4.104 30 N -0.531 5.531 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.152 0.848 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.023 0.977 43 H 0.021 0.979 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.105 0.895 47 H 0.072 0.928 48 H 0.146 0.854 49 H 0.081 0.919 50 H 0.080 0.920 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.752 8.561 -4.684 28.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.211 6.211 3 C 0.147 3.853 4 C -0.166 4.166 5 C -0.047 4.047 6 C 0.340 3.660 7 O -0.386 6.386 8 N -0.332 5.332 9 C -0.028 4.028 10 C -0.167 4.167 11 C -0.104 4.104 12 H 0.092 0.908 13 C -0.210 4.210 14 C -0.122 4.122 15 H 0.093 0.907 16 C 0.033 3.967 17 N -0.378 5.378 18 C -0.374 4.374 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.577 5.577 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.213 1.213 25 H -0.213 1.213 26 C -0.001 4.001 27 C -0.205 4.205 28 C 0.027 3.973 29 C -0.161 4.161 30 N -0.257 5.257 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.170 0.830 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.041 0.959 43 H 0.038 0.962 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.123 0.877 47 H 0.090 0.910 48 H 0.164 0.836 49 H 0.100 0.900 50 H 0.098 0.902 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -26.992 7.844 -4.307 28.437 hybrid contribution 1.536 -0.110 0.232 1.557 sum -25.457 7.735 -4.074 26.916 Atomic orbital electron populations 1.22874 0.77063 1.03077 1.02428 1.86281 1.23009 1.24100 1.87679 1.19581 0.88874 0.84647 0.92231 1.21080 0.91979 0.98903 1.04684 1.20146 0.94159 0.93239 0.97122 1.18149 0.86390 0.80820 0.80652 1.90891 1.64745 1.41140 1.41857 1.48033 1.09202 1.34935 1.41046 1.22139 0.95647 0.95147 0.89850 1.21953 0.96473 1.02289 0.96015 1.21080 0.94393 0.95253 0.99690 0.90756 1.21989 1.02604 0.95643 1.00753 1.21691 0.96375 0.99573 0.94535 0.90738 1.20676 0.87970 0.92955 0.95109 1.42419 1.05649 1.27191 1.62538 1.19143 0.84165 1.06614 1.27464 0.91313 1.24757 0.97896 0.97418 1.00810 1.69659 1.34788 1.13572 1.39726 0.86289 0.85590 0.76840 0.77561 1.21716 1.21342 1.21312 1.21826 0.76944 1.03175 0.98185 1.22051 0.93819 0.99284 1.05373 1.20835 0.91537 0.91889 0.93025 1.20757 0.99136 0.92718 1.03493 1.66974 1.41153 0.98425 1.19105 0.92249 0.88507 0.92257 0.83046 0.89390 0.90802 0.91494 0.90753 0.91715 0.93110 0.92482 0.95931 0.96157 0.78092 0.93416 0.87723 0.90997 0.83630 0.90008 0.90159 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.38 101.05 1.05 1.36 16 2 O -0.30 -3.46 10.47 -18.75 -0.20 -3.65 16 3 C 0.33 3.96 7.49 -17.16 -0.13 3.83 16 4 C -0.15 -1.90 9.70 -38.84 -0.38 -2.28 16 5 C -0.04 -0.46 5.15 -104.68 -0.54 -1.00 16 6 C 0.55 8.76 7.38 -12.19 -0.09 8.67 16 7 O -0.51 -10.52 16.37 5.36 0.09 -10.43 16 8 N -0.60 -8.28 2.97 -173.77 -0.52 -8.80 16 9 C 0.09 0.92 4.47 -3.71 -0.02 0.90 16 10 C -0.13 -1.26 5.62 -26.61 -0.15 -1.41 16 11 C -0.09 -1.01 2.71 -90.58 -0.25 -1.25 16 12 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 13 C -0.15 -1.62 8.11 37.16 0.30 -1.32 16 14 C -0.10 -1.64 2.15 -90.50 -0.19 -1.83 16 15 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 16 C 0.16 3.18 5.19 -4.04 -0.02 3.16 16 17 N -0.73 -18.87 5.38 -59.91 -0.32 -19.20 16 18 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 19 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -29.11 13.06 55.49 0.72 -28.38 16 22 Si 0.91 22.90 29.55 -169.99 -5.02 17.87 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 C 0.12 1.97 5.06 -3.71 -0.02 1.95 16 27 C -0.18 -1.80 7.12 -39.03 -0.28 -2.08 16 28 C 0.16 1.51 6.77 -82.65 -0.56 0.95 16 29 C -0.10 -0.58 10.16 36.01 0.37 -0.21 16 30 N -0.53 -5.83 9.09 -9.59 -0.09 -5.92 16 31 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 32 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 33 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 34 H 0.15 2.05 8.06 -52.49 -0.42 1.62 16 35 H 0.09 0.75 4.73 -51.93 -0.25 0.51 16 36 H 0.07 0.59 6.68 -51.93 -0.35 0.25 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.77 6.57 -51.93 -0.34 0.43 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.60 4.98 -51.93 -0.26 0.34 16 42 H 0.02 0.44 6.72 -51.93 -0.35 0.09 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.38 10.66 6.89 -40.82 -0.28 10.38 16 45 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 46 H 0.10 2.19 6.20 -51.93 -0.32 1.86 16 47 H 0.07 1.12 6.69 -51.93 -0.35 0.77 16 48 H 0.15 1.11 6.65 -52.49 -0.35 0.76 16 49 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.08 0.30 8.08 -51.93 -0.42 -0.12 16 51 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 399.02 15.07 6.01 6.01 Total: -1.00 -34.95 399.02 -8.34 -43.29 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -7.88 Total: 7.29 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -1.15 Total: 1.91 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: -0.20 Total: -62.29 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.11 Total: -14.08 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.95 -8.34 -43.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133065442.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.060 kcal (2) G-P(sol) polarization free energy of solvation -34.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds