Wall clock time and date at job start Sat Apr 11 2020 08:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35681 * 117.00248 * 2 1 4 4 C 1.38890 * 119.62844 * 180.02562 * 3 2 1 5 5 C 1.39567 * 118.95164 * 179.97438 * 4 3 2 6 6 C 1.48161 * 120.89319 * 179.97438 * 5 4 3 7 7 O 1.21510 * 119.99981 * 320.33419 * 6 5 4 8 8 N 1.34775 * 119.99911 * 140.33399 * 6 5 4 9 9 C 1.46930 * 120.63187 * 354.20925 * 8 6 5 10 10 C 1.53186 * 108.77553 * 233.58417 * 9 8 6 11 11 C 1.53042 * 109.31369 * 305.36357 * 10 9 8 12 12 H 1.09001 * 109.45589 * 181.38356 * 11 10 9 13 13 C 1.52997 * 109.45980 * 301.34490 * 11 10 9 14 14 C 1.53045 * 109.53721 * 61.36492 * 11 10 9 15 15 H 1.09000 * 109.52312 * 58.60421 * 14 11 10 16 16 C 1.53001 * 109.49423 * 178.68427 * 14 11 10 17 17 N 1.46500 * 109.46608 * 184.83872 * 16 14 11 18 18 C 1.36936 * 119.99895 * 180.02562 * 17 16 14 19 19 H 1.08004 * 119.99955 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00194 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00297 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00159 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47476 * 179.97438 * 22 20 18 24 24 H 1.48505 * 109.46742 * 299.99582 * 22 20 18 25 25 H 1.48499 * 109.47125 * 59.99082 * 22 20 18 26 26 C 1.46920 * 120.63192 * 174.18104 * 8 6 5 27 27 C 1.39966 * 118.21344 * 0.27547 * 5 4 3 28 28 C 1.37983 * 119.13446 * 359.47426 * 27 5 4 29 29 C 1.50705 * 119.51019 * 180.25255 * 28 27 5 30 30 N 1.31903 * 120.97568 * 0.53984 * 28 27 5 31 31 H 1.09000 * 109.47331 * 60.00252 * 1 2 3 32 32 H 1.09012 * 109.46955 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47259 * 299.99898 * 1 2 3 34 34 H 1.08001 * 120.52310 * 0.02562 * 4 3 2 35 35 H 1.09006 * 109.58235 * 353.37264 * 9 8 6 36 36 H 1.09001 * 109.58946 * 113.79309 * 9 8 6 37 37 H 1.08999 * 109.49813 * 65.31525 * 10 9 8 38 38 H 1.09000 * 109.49672 * 185.40646 * 10 9 8 39 39 H 1.08999 * 109.47359 * 180.02562 * 13 11 10 40 40 H 1.09006 * 109.46586 * 300.06897 * 13 11 10 41 41 H 1.08999 * 109.47476 * 60.06411 * 13 11 10 42 42 H 1.08999 * 109.47303 * 64.84053 * 16 14 11 43 43 H 1.09002 * 109.47032 * 304.83295 * 16 14 11 44 44 H 0.97000 * 120.00088 * 359.97438 * 17 16 14 45 45 H 0.96991 * 120.00490 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.58981 * 6.62967 * 26 8 6 47 47 H 1.08996 * 109.59127 * 246.20320 * 26 8 6 48 48 H 1.08001 * 120.43443 * 179.70257 * 27 5 4 49 49 H 1.09007 * 109.46842 * 270.27749 * 29 28 27 50 50 H 1.08997 * 109.47345 * 30.28317 * 29 28 27 51 51 H 1.08998 * 109.46886 * 150.28609 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4325 1.2725 -0.0005 5 6 4.0514 2.5235 -0.0011 6 6 5.5283 2.6414 -0.0011 7 8 6.1984 1.8827 0.6710 8 7 6.1285 3.5904 -0.7465 9 6 5.3440 4.4320 -1.6604 10 6 5.9629 4.3506 -3.0593 11 6 7.4453 4.7221 -2.9794 12 1 7.8823 4.6889 -3.9774 13 6 7.5868 6.1344 -2.4080 14 6 8.1735 3.7291 -2.0705 15 1 8.0528 2.7196 -2.4634 16 6 9.6614 4.0819 -2.0174 17 7 10.3767 3.0655 -1.2419 18 6 11.7294 3.1716 -1.0572 19 1 12.2690 4.0044 -1.4836 20 6 12.4073 2.2083 -0.3229 21 7 11.7500 1.1931 0.1964 22 14 14.2528 2.3527 -0.0715 23 1 14.7327 1.2069 0.7421 24 1 14.9342 2.3433 -1.3910 25 1 14.5583 3.6230 0.6343 26 6 7.5796 3.8035 -0.6604 27 6 3.2394 3.6635 0.0049 28 6 1.8680 3.5115 0.0000 29 6 0.9857 4.7333 0.0005 30 7 1.3178 2.3127 0.0004 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 4.0230 0.3683 -0.0014 35 1 4.3151 4.0736 -1.6945 36 1 5.3620 5.4648 -1.3123 37 1 5.8624 3.3354 -3.4431 38 1 5.4493 5.0441 -3.7252 39 1 8.6426 6.3994 -2.3514 40 1 7.0681 6.8417 -3.0552 41 1 7.1504 6.1679 -1.4098 42 1 9.7872 5.0556 -1.5438 43 1 10.0632 4.1157 -3.0301 44 1 9.8921 2.3178 -0.8586 45 1 12.2236 0.5202 0.7098 46 1 8.0260 3.0306 -0.0348 47 1 7.7800 4.7850 -0.2308 48 1 3.6805 4.6493 0.0095 49 1 0.7737 5.0278 1.0284 50 1 1.4941 5.5488 -0.5137 51 1 0.0511 4.5067 -0.5125 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133065442.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:26:36 Heat of formation + Delta-G solvation = -46.689063 kcal Electronic energy + Delta-G solvation = -31280.414898 eV Core-core repulsion = 27179.543529 eV Total energy + Delta-G solvation = -4100.871370 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.26487 -41.20825 -39.48984 -38.90298 -36.69160 -35.12222 -34.11112 -33.51456 -32.92251 -31.43348 -29.37281 -28.73693 -27.67492 -27.43246 -26.22588 -24.95490 -24.40596 -23.70627 -22.59463 -21.09744 -19.78089 -19.02924 -18.90552 -18.52920 -17.47660 -17.18145 -17.10156 -16.95774 -16.75093 -16.27396 -16.03450 -15.71099 -15.37531 -15.26373 -15.03667 -14.91995 -14.59375 -14.53824 -14.38229 -14.16653 -13.78491 -13.37693 -13.33708 -13.04960 -13.02765 -12.95707 -12.83194 -12.69562 -12.59832 -12.45748 -12.18663 -12.11269 -11.98078 -11.90553 -11.73071 -11.54279 -11.30519 -11.21880 -10.99614 -10.91517 -10.64974 -9.68835 -9.51979 -9.00849 -7.94454 -5.25150 -0.38733 -0.01908 1.44446 1.44798 1.48929 1.55194 1.72280 2.10524 2.55220 2.55769 3.06333 3.20909 3.38208 3.66205 3.74731 3.82010 3.84778 3.87315 3.98776 4.05857 4.19419 4.28049 4.38041 4.39162 4.42965 4.43321 4.50144 4.51545 4.57099 4.68690 4.73124 4.76470 4.82619 4.86356 4.88395 4.91598 4.96095 4.99817 5.05956 5.10869 5.17946 5.26527 5.31421 5.39383 5.41981 5.45655 5.48513 5.62918 6.11943 6.23720 6.25852 6.68139 6.91591 7.31071 8.08165 8.29853 9.28870 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014275 B = 0.002586 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.958973 B =10826.563099 C =12202.422794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.322 6.322 3 C 0.321 3.679 4 C -0.172 4.172 5 C -0.044 4.044 6 C 0.548 3.452 7 O -0.577 6.577 8 N -0.591 5.591 9 C 0.088 3.912 10 C -0.124 4.124 11 C -0.079 4.079 12 H 0.079 0.921 13 C -0.149 4.149 14 C -0.091 4.091 15 H 0.045 0.955 16 C 0.160 3.840 17 N -0.749 5.749 18 C -0.245 4.245 19 H 0.080 0.920 20 C -0.081 4.081 21 N -0.973 5.973 22 Si 0.977 3.023 23 H -0.298 1.298 24 H -0.275 1.275 25 H -0.274 1.274 26 C 0.128 3.872 27 C -0.172 4.172 28 C 0.170 3.830 29 C -0.102 4.102 30 N -0.532 5.532 31 H 0.064 0.936 32 H 0.120 0.880 33 H 0.061 0.939 34 H 0.129 0.871 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.051 0.949 38 H 0.116 0.884 39 H 0.048 0.952 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.035 0.965 43 H 0.023 0.977 44 H 0.369 0.631 45 H 0.250 0.750 46 H 0.049 0.951 47 H 0.085 0.915 48 H 0.177 0.823 49 H 0.094 0.906 50 H 0.109 0.891 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.128 12.559 -6.263 32.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.229 6.229 3 C 0.142 3.858 4 C -0.194 4.194 5 C -0.055 4.055 6 C 0.336 3.664 7 O -0.457 6.457 8 N -0.322 5.322 9 C -0.033 4.033 10 C -0.162 4.162 11 C -0.098 4.098 12 H 0.097 0.903 13 C -0.206 4.206 14 C -0.111 4.111 15 H 0.063 0.937 16 C 0.033 3.967 17 N -0.392 5.392 18 C -0.377 4.377 19 H 0.098 0.902 20 C -0.273 4.273 21 N -0.624 5.624 22 Si 0.806 3.194 23 H -0.225 1.225 24 H -0.201 1.201 25 H -0.200 1.200 26 C 0.006 3.994 27 C -0.192 4.192 28 C 0.033 3.967 29 C -0.159 4.159 30 N -0.258 5.258 31 H 0.083 0.917 32 H 0.138 0.862 33 H 0.079 0.921 34 H 0.147 0.853 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.070 0.930 38 H 0.134 0.866 39 H 0.067 0.933 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.041 0.959 44 H 0.201 0.799 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.103 0.897 48 H 0.194 0.806 49 H 0.112 0.888 50 H 0.128 0.872 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -29.405 11.915 -5.955 32.281 hybrid contribution 2.173 -1.288 0.665 2.612 sum -27.233 10.627 -5.290 29.707 Atomic orbital electron populations 1.23126 0.75133 1.04817 1.02722 1.86260 1.25002 1.24106 1.87561 1.19555 0.88463 0.85391 0.92376 1.20993 0.92773 0.98600 1.07004 1.19904 0.92240 0.94426 0.98909 1.18711 0.87694 0.80138 0.79857 1.90854 1.66420 1.43687 1.44754 1.48096 1.08307 1.34787 1.41015 1.22572 0.95778 0.96013 0.88897 1.21965 0.94985 1.02585 0.96651 1.21070 0.95377 0.94791 0.98578 0.90278 1.21968 1.02149 0.94898 1.01591 1.21557 0.94613 0.99578 0.95322 0.93664 1.20875 0.89884 0.91804 0.94092 1.42702 1.05322 1.28022 1.63140 1.19639 0.85504 1.06336 1.26198 0.90168 1.25678 1.02808 0.97422 1.01389 1.69866 1.36561 1.14710 1.41268 0.85154 0.79806 0.76754 0.77701 1.22486 1.20095 1.20029 1.21495 0.78676 1.01710 0.97510 1.22327 0.93780 0.99214 1.03905 1.21586 0.91922 0.92534 0.90642 1.20929 0.98832 0.91373 1.04727 1.67124 1.40915 0.98681 1.19051 0.91707 0.86176 0.92070 0.85254 0.87589 0.87425 0.93035 0.86565 0.93301 0.89791 0.92167 0.94728 0.95904 0.79920 0.94168 0.93246 0.89656 0.80610 0.88807 0.87218 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.38 113.37 1.18 1.70 16 2 O -0.32 -7.49 10.47 -89.99 -0.94 -8.43 16 3 C 0.32 7.89 7.49 84.80 0.63 8.52 16 4 C -0.17 -4.82 9.70 22.75 0.22 -4.60 16 5 C -0.04 -1.15 5.15 -19.90 -0.10 -1.25 16 6 C 0.55 18.34 7.38 86.88 0.64 18.98 16 7 O -0.58 -26.31 16.37 -3.75 -0.06 -26.37 16 8 N -0.59 -16.36 2.97 -821.98 -2.44 -18.80 16 9 C 0.09 1.40 4.47 86.36 0.39 1.79 16 10 C -0.12 -1.99 5.62 30.67 0.17 -1.82 16 11 C -0.08 -1.69 2.71 -10.77 -0.03 -1.71 16 12 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 13 C -0.15 -2.58 8.11 71.98 0.58 -2.00 16 14 C -0.09 -2.98 2.15 -10.71 -0.02 -3.00 16 15 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 16 C 0.16 6.43 5.19 86.38 0.45 6.88 16 17 N -0.75 -40.30 5.38 -343.45 -1.85 -42.15 16 18 C -0.25 -14.25 9.99 84.03 0.84 -13.41 16 19 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 20 C -0.08 -4.91 5.50 84.86 0.47 -4.44 16 21 N -0.97 -63.91 13.06 21.65 0.28 -63.63 16 22 Si 0.98 48.08 29.55 68.60 2.03 50.10 16 23 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 26 C 0.13 4.40 5.06 86.36 0.44 4.84 16 27 C -0.17 -2.90 7.12 22.63 0.16 -2.74 16 28 C 0.17 2.61 6.77 42.49 0.29 2.90 16 29 C -0.10 -0.65 10.16 71.24 0.72 0.08 16 30 N -0.53 -10.80 9.09 -297.17 -2.70 -13.50 16 31 H 0.06 0.85 8.10 -2.39 -0.02 0.84 16 32 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.06 0.85 8.10 -2.39 -0.02 0.83 16 34 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 35 H 0.11 1.39 4.73 -2.38 -0.01 1.38 16 36 H 0.11 1.11 6.68 -2.39 -0.02 1.09 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.05 1.02 6.57 -2.39 -0.02 1.00 16 40 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.06 1.01 4.98 -2.39 -0.01 1.00 16 42 H 0.03 1.33 6.72 -2.39 -0.02 1.32 16 43 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.37 21.98 6.89 -92.71 -0.64 21.34 16 45 H 0.25 15.94 8.31 -92.72 -0.77 15.17 16 46 H 0.05 2.27 6.20 -2.39 -0.01 2.25 16 47 H 0.09 2.65 6.69 -2.39 -0.02 2.64 16 48 H 0.18 1.84 6.65 -2.91 -0.02 1.82 16 49 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 50 H 0.11 0.12 8.08 -2.39 -0.02 0.10 16 51 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -83.81 399.02 1.65 -82.16 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: 0.31 Total: 29.92 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 7.03 Total: 10.70 kcal Atomic # 7 Polarization: -131.36 SS G_CDS: -6.71 Total: -138.07 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -1.00 Total: -34.80 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.10 kcal Total: -83.81 1.65 -82.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133065442.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.469 kcal (2) G-P(sol) polarization free energy of solvation -83.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds