Wall clock time and date at job start Sat Apr 11 2020 08:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35677 * 117.00084 * 2 1 4 4 C 1.38894 * 119.62260 * 179.97438 * 3 2 1 5 5 C 1.39572 * 118.95073 * 179.97438 * 4 3 2 6 6 C 1.48157 * 120.89875 * 180.02562 * 5 4 3 7 7 O 1.21508 * 120.00492 * 144.50853 * 6 5 4 8 8 N 1.34781 * 119.99886 * 324.51456 * 6 5 4 9 9 C 1.46925 * 120.62900 * 353.77995 * 8 6 5 10 10 C 1.53191 * 108.77609 * 233.88454 * 9 8 6 11 11 C 1.53047 * 109.31032 * 305.36363 * 10 9 8 12 12 H 1.08992 * 109.45746 * 301.34138 * 11 10 9 13 13 C 1.53003 * 109.44746 * 181.37711 * 11 10 9 14 14 C 1.53042 * 109.53510 * 61.36407 * 11 10 9 15 15 H 1.08996 * 109.49817 * 58.59216 * 14 11 10 16 16 C 1.52998 * 109.49471 * 178.68129 * 14 11 10 17 17 N 1.46490 * 109.47285 * 184.83848 * 16 14 11 18 18 C 1.36943 * 120.00329 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99834 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99999 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99815 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00275 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46554 * 90.00659 * 22 20 18 24 24 H 1.48498 * 109.46966 * 210.00481 * 22 20 18 25 25 H 1.48495 * 109.47009 * 330.00479 * 22 20 18 26 26 C 1.46921 * 120.63177 * 174.05811 * 8 6 5 27 27 C 1.39974 * 118.21458 * 0.28060 * 5 4 3 28 28 C 1.37980 * 119.13220 * 359.47459 * 27 5 4 29 29 C 1.50697 * 119.51561 * 180.27859 * 28 27 5 30 30 N 1.31912 * 120.97816 * 0.53343 * 28 27 5 31 31 H 1.09003 * 109.47287 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46948 * 299.99766 * 1 2 3 33 33 H 1.09003 * 109.47003 * 59.99561 * 1 2 3 34 34 H 1.08005 * 120.52717 * 0.02908 * 4 3 2 35 35 H 1.09007 * 109.58832 * 353.66674 * 9 8 6 36 36 H 1.08996 * 109.59020 * 114.09685 * 9 8 6 37 37 H 1.08998 * 109.50008 * 185.41336 * 10 9 8 38 38 H 1.09002 * 109.52751 * 65.32915 * 10 9 8 39 39 H 1.08997 * 109.47256 * 299.94235 * 13 11 10 40 40 H 1.09002 * 109.46664 * 59.93901 * 13 11 10 41 41 H 1.08994 * 109.46892 * 179.97438 * 13 11 10 42 42 H 1.09003 * 109.47484 * 304.84460 * 16 14 11 43 43 H 1.09007 * 109.47315 * 64.84109 * 16 14 11 44 44 H 0.97005 * 120.00139 * 0.02562 * 17 16 14 45 45 H 0.97000 * 120.00165 * 179.97438 * 21 20 18 46 46 H 1.09007 * 109.58707 * 245.90539 * 26 8 6 47 47 H 1.08999 * 109.58943 * 6.18530 * 26 8 6 48 48 H 1.07996 * 120.43463 * 179.72770 * 27 5 4 49 49 H 1.09002 * 109.46809 * 270.26206 * 29 28 27 50 50 H 1.09000 * 109.46860 * 30.25425 * 29 28 27 51 51 H 1.08991 * 109.47624 * 150.25430 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4325 1.2724 0.0005 5 6 4.0515 2.5233 0.0000 6 6 5.5284 2.6414 0.0000 7 8 6.0658 3.5435 -0.6113 8 7 6.2758 1.7480 0.6780 9 6 5.6404 0.7345 1.5310 10 6 6.2486 0.8196 2.9345 11 6 7.7705 0.6929 2.8350 12 1 8.0258 -0.2555 2.3624 13 6 8.3786 0.7431 4.2381 14 6 8.3264 1.8464 1.9968 15 1 8.0504 2.7956 2.4558 16 6 9.8508 1.7373 1.9254 17 7 10.3914 2.9028 1.2217 18 6 11.7426 3.0241 1.0351 19 1 12.4098 2.2605 1.4070 20 6 12.2549 4.1289 0.3688 21 7 13.5537 4.2456 0.1898 22 14 11.1010 5.4499 -0.2739 23 1 10.9016 6.4845 0.7725 24 1 11.6913 6.0768 -1.4838 25 1 9.7931 4.8384 -0.6212 26 6 7.7417 1.7728 0.5828 27 6 3.2395 3.6635 0.0049 28 6 1.8681 3.5116 -0.0009 29 6 0.9858 4.7332 -0.0020 30 7 1.3179 2.3127 -0.0005 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 4.0231 0.3681 0.0005 35 1 4.5681 0.9229 1.5855 36 1 5.8186 -0.2571 1.1152 37 1 5.8557 0.0111 3.5509 38 1 5.9921 1.7784 3.3852 39 1 8.1238 1.6916 4.7108 40 1 7.9827 -0.0784 4.8352 41 1 9.4625 0.6524 4.1677 42 1 10.2602 1.7001 2.9349 43 1 10.1254 0.8292 1.3885 44 1 9.7923 3.5888 0.8880 45 1 13.9116 5.0174 -0.2761 46 1 8.0914 0.8658 0.0895 47 1 8.0560 2.6449 0.0094 48 1 3.6807 4.6493 0.0091 49 1 0.7728 5.0284 1.0254 50 1 1.4948 5.5485 -0.5161 51 1 0.0519 4.5065 -0.5160 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133065445.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:26:50 Heat of formation + Delta-G solvation = -18.414211 kcal Electronic energy + Delta-G solvation = -31301.889821 eV Core-core repulsion = 27202.244541 eV Total energy + Delta-G solvation = -4099.645280 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.41319 -40.16124 -38.52191 -37.87564 -35.34892 -34.04377 -33.31942 -32.16654 -31.87612 -30.24820 -28.80729 -28.38908 -27.12504 -26.07087 -24.57245 -23.36395 -22.88392 -22.62545 -21.14861 -20.30549 -19.51426 -18.41534 -17.52039 -17.32330 -16.71785 -16.44122 -16.31700 -15.99672 -15.28720 -14.91101 -14.60527 -14.53051 -14.40894 -14.23606 -14.06875 -13.79308 -13.49209 -13.37698 -13.15728 -12.87751 -12.78864 -12.73208 -12.55824 -12.47709 -12.10187 -12.01879 -11.84508 -11.66240 -11.42539 -11.27091 -11.03158 -10.88477 -10.68278 -10.47580 -10.36126 -10.20289 -10.12830 -10.03172 -9.70951 -9.52379 -8.86905 -8.79635 -8.68655 -7.18199 -5.72516 -3.08018 0.41995 0.74739 2.50414 2.61518 2.83781 3.37366 3.45385 3.52342 3.54357 3.72215 4.08490 4.49497 4.54712 4.62332 4.65700 4.71838 4.74383 4.77010 4.87289 4.92514 4.99111 5.04374 5.08709 5.16486 5.19843 5.24398 5.27782 5.44336 5.50600 5.53640 5.56802 5.59037 5.60862 5.68360 5.72236 5.75860 5.83028 5.85291 5.94822 5.99571 6.08919 6.23848 6.31918 6.35360 6.44039 6.71002 6.76717 6.79598 7.23125 7.41619 7.96143 8.03024 8.46413 9.25566 9.98476 10.17588 11.45678 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013384 B = 0.002879 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.548530 B = 9723.133381 C =11173.977706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.306 6.306 3 C 0.322 3.678 4 C -0.172 4.172 5 C -0.038 4.038 6 C 0.556 3.444 7 O -0.518 6.518 8 N -0.600 5.600 9 C 0.091 3.909 10 C -0.129 4.129 11 C -0.084 4.084 12 H 0.074 0.926 13 C -0.149 4.149 14 C -0.106 4.106 15 H 0.074 0.926 16 C 0.163 3.837 17 N -0.757 5.757 18 C -0.244 4.244 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.935 5.935 22 Si 0.879 3.121 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.272 1.272 26 C 0.117 3.883 27 C -0.158 4.158 28 C 0.167 3.833 29 C -0.105 4.105 30 N -0.529 5.529 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.153 0.847 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.067 0.933 42 H 0.037 0.963 43 H 0.027 0.973 44 H 0.362 0.638 45 H 0.259 0.741 46 H 0.074 0.926 47 H 0.100 0.900 48 H 0.148 0.852 49 H 0.083 0.917 50 H 0.081 0.919 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.060 -9.111 4.230 31.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.212 6.212 3 C 0.143 3.857 4 C -0.193 4.193 5 C -0.049 4.049 6 C 0.342 3.658 7 O -0.394 6.394 8 N -0.332 5.332 9 C -0.032 4.032 10 C -0.167 4.167 11 C -0.103 4.103 12 H 0.092 0.908 13 C -0.206 4.206 14 C -0.126 4.126 15 H 0.093 0.907 16 C 0.035 3.965 17 N -0.403 5.403 18 C -0.373 4.373 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.583 5.583 22 Si 0.709 3.291 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.198 1.198 26 C -0.004 4.004 27 C -0.179 4.179 28 C 0.031 3.969 29 C -0.162 4.162 30 N -0.255 5.255 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.171 0.829 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.054 0.946 43 H 0.045 0.955 44 H 0.195 0.805 45 H 0.069 0.931 46 H 0.092 0.908 47 H 0.118 0.882 48 H 0.166 0.834 49 H 0.101 0.899 50 H 0.100 0.900 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -30.295 -9.038 3.895 31.854 hybrid contribution -0.044 1.066 -0.491 1.174 sum -30.339 -7.972 3.404 31.553 Atomic orbital electron populations 1.22879 0.76978 1.03080 1.02527 1.86253 1.23091 1.24082 1.87811 1.19587 0.88875 0.84724 0.92489 1.21359 0.92329 0.98763 1.06874 1.20157 0.94071 0.93222 0.97465 1.18155 0.85753 0.81875 0.79971 1.90855 1.72813 1.32233 1.43474 1.48072 1.07694 1.31870 1.45608 1.22279 0.98334 0.91742 0.90833 1.22003 0.96103 1.02739 0.95859 1.21091 0.93844 0.98828 0.96550 0.90762 1.21887 1.01829 1.01358 0.95507 1.21776 0.97145 0.99025 0.94618 0.90723 1.20706 0.88655 0.90894 0.96201 1.42781 1.05147 1.23290 1.69073 1.19031 0.81769 1.05816 1.30731 0.89232 1.24655 0.95465 0.98237 1.00650 1.69705 1.10293 1.30833 1.47430 0.86619 0.80976 0.82821 0.78678 1.21143 1.21708 1.19781 1.21833 0.76385 1.04259 0.97927 1.21912 0.93350 0.99620 1.03047 1.20886 0.91561 0.91896 0.92570 1.20774 0.99107 0.92779 1.03554 1.66991 1.41165 0.98447 1.18852 0.88476 0.92206 0.92243 0.82928 0.88872 0.90734 0.90548 0.91475 0.92782 0.93060 0.91425 0.94575 0.95474 0.80537 0.93101 0.90774 0.88201 0.83445 0.89885 0.89991 0.90211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.38 101.05 1.05 1.31 16 2 O -0.31 -2.87 10.47 -18.73 -0.20 -3.06 16 3 C 0.32 3.38 7.49 -17.16 -0.13 3.25 16 4 C -0.17 -1.79 7.41 -38.84 -0.29 -2.08 16 5 C -0.04 -0.46 5.29 -104.68 -0.55 -1.02 16 6 C 0.56 8.29 7.42 -12.19 -0.09 8.20 16 7 O -0.52 -9.92 16.32 5.36 0.09 -9.83 16 8 N -0.60 -7.94 2.97 -173.77 -0.52 -8.46 16 9 C 0.09 0.86 4.83 -3.71 -0.02 0.84 16 10 C -0.13 -1.20 5.36 -26.61 -0.14 -1.35 16 11 C -0.08 -0.95 2.23 -90.57 -0.20 -1.15 16 12 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 13 C -0.15 -1.62 8.82 37.16 0.33 -1.30 16 14 C -0.11 -1.59 1.92 -90.50 -0.17 -1.77 16 15 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 16 C 0.16 3.07 5.41 -4.05 -0.02 3.04 16 17 N -0.76 -18.27 5.18 -59.91 -0.31 -18.58 16 18 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16 19 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 21 N -0.93 -29.96 13.97 55.49 0.78 -29.18 16 22 Si 0.88 23.20 27.74 -169.99 -4.71 18.49 16 23 H -0.28 -7.46 7.11 56.52 0.40 -7.05 16 24 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 25 H -0.27 -6.99 6.52 56.52 0.37 -6.62 16 26 C 0.12 1.82 5.52 -3.72 -0.02 1.80 16 27 C -0.16 -1.75 9.35 -39.03 -0.36 -2.11 16 28 C 0.17 1.62 6.77 -82.65 -0.56 1.06 16 29 C -0.10 -0.67 10.16 36.00 0.37 -0.31 16 30 N -0.53 -5.52 9.09 -9.60 -0.09 -5.61 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 33 H 0.06 0.39 8.10 -51.93 -0.42 -0.04 16 34 H 0.15 1.36 6.19 -52.48 -0.33 1.04 16 35 H 0.09 0.81 4.49 -51.93 -0.23 0.57 16 36 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.82 6.30 -51.93 -0.33 0.49 16 42 H 0.04 0.68 6.15 -51.93 -0.32 0.36 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.36 8.79 4.76 -40.82 -0.19 8.60 16 45 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 46 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 47 H 0.10 1.93 6.20 -51.93 -0.32 1.61 16 48 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 49 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.08 0.44 8.08 -51.93 -0.42 0.02 16 51 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 401.26 15.07 6.05 6.05 Total: -1.00 -35.38 401.26 -8.06 -43.44 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -8.07 Total: 5.40 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -1.08 Total: 1.35 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: -0.14 Total: -61.82 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.11 Total: -12.90 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -4.71 Total: 18.49 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.38 -8.06 -43.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133065445.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.027 kcal (2) G-P(sol) polarization free energy of solvation -35.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds