Wall clock time and date at job start Sat Apr 11 2020 08:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35677 * 117.00084 * 2 1 4 4 C 1.38894 * 119.62260 * 179.97438 * 3 2 1 5 5 C 1.39572 * 118.95073 * 179.97438 * 4 3 2 6 6 C 1.48157 * 120.89875 * 180.02562 * 5 4 3 7 7 O 1.21508 * 120.00492 * 144.50853 * 6 5 4 8 8 N 1.34781 * 119.99886 * 324.51456 * 6 5 4 9 9 C 1.46925 * 120.62900 * 353.77995 * 8 6 5 10 10 C 1.53191 * 108.77609 * 233.88454 * 9 8 6 11 11 C 1.53047 * 109.31032 * 305.36363 * 10 9 8 12 12 H 1.08992 * 109.45746 * 301.34138 * 11 10 9 13 13 C 1.53003 * 109.44746 * 181.37711 * 11 10 9 14 14 C 1.53042 * 109.53510 * 61.36407 * 11 10 9 15 15 H 1.08996 * 109.49817 * 58.59216 * 14 11 10 16 16 C 1.52998 * 109.49471 * 178.68129 * 14 11 10 17 17 N 1.46490 * 109.47285 * 184.83848 * 16 14 11 18 18 C 1.36943 * 120.00329 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99834 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99999 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99815 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00275 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46554 * 90.00659 * 22 20 18 24 24 H 1.48498 * 109.46966 * 210.00481 * 22 20 18 25 25 H 1.48495 * 109.47009 * 330.00479 * 22 20 18 26 26 C 1.46921 * 120.63177 * 174.05811 * 8 6 5 27 27 C 1.39974 * 118.21458 * 0.28060 * 5 4 3 28 28 C 1.37980 * 119.13220 * 359.47459 * 27 5 4 29 29 C 1.50697 * 119.51561 * 180.27859 * 28 27 5 30 30 N 1.31912 * 120.97816 * 0.53343 * 28 27 5 31 31 H 1.09003 * 109.47287 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46948 * 299.99766 * 1 2 3 33 33 H 1.09003 * 109.47003 * 59.99561 * 1 2 3 34 34 H 1.08005 * 120.52717 * 0.02908 * 4 3 2 35 35 H 1.09007 * 109.58832 * 353.66674 * 9 8 6 36 36 H 1.08996 * 109.59020 * 114.09685 * 9 8 6 37 37 H 1.08998 * 109.50008 * 185.41336 * 10 9 8 38 38 H 1.09002 * 109.52751 * 65.32915 * 10 9 8 39 39 H 1.08997 * 109.47256 * 299.94235 * 13 11 10 40 40 H 1.09002 * 109.46664 * 59.93901 * 13 11 10 41 41 H 1.08994 * 109.46892 * 179.97438 * 13 11 10 42 42 H 1.09003 * 109.47484 * 304.84460 * 16 14 11 43 43 H 1.09007 * 109.47315 * 64.84109 * 16 14 11 44 44 H 0.97005 * 120.00139 * 0.02562 * 17 16 14 45 45 H 0.97000 * 120.00165 * 179.97438 * 21 20 18 46 46 H 1.09007 * 109.58707 * 245.90539 * 26 8 6 47 47 H 1.08999 * 109.58943 * 6.18530 * 26 8 6 48 48 H 1.07996 * 120.43463 * 179.72770 * 27 5 4 49 49 H 1.09002 * 109.46809 * 270.26206 * 29 28 27 50 50 H 1.09000 * 109.46860 * 30.25425 * 29 28 27 51 51 H 1.08991 * 109.47624 * 150.25430 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4325 1.2724 0.0005 5 6 4.0515 2.5233 0.0000 6 6 5.5284 2.6414 0.0000 7 8 6.0658 3.5435 -0.6113 8 7 6.2758 1.7480 0.6780 9 6 5.6404 0.7345 1.5310 10 6 6.2486 0.8196 2.9345 11 6 7.7705 0.6929 2.8350 12 1 8.0258 -0.2555 2.3624 13 6 8.3786 0.7431 4.2381 14 6 8.3264 1.8464 1.9968 15 1 8.0504 2.7956 2.4558 16 6 9.8508 1.7373 1.9254 17 7 10.3914 2.9028 1.2217 18 6 11.7426 3.0241 1.0351 19 1 12.4098 2.2605 1.4070 20 6 12.2549 4.1289 0.3688 21 7 13.5537 4.2456 0.1898 22 14 11.1010 5.4499 -0.2739 23 1 10.9016 6.4845 0.7725 24 1 11.6913 6.0768 -1.4838 25 1 9.7931 4.8384 -0.6212 26 6 7.7417 1.7728 0.5828 27 6 3.2395 3.6635 0.0049 28 6 1.8681 3.5116 -0.0009 29 6 0.9858 4.7332 -0.0020 30 7 1.3179 2.3127 -0.0005 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 4.0231 0.3681 0.0005 35 1 4.5681 0.9229 1.5855 36 1 5.8186 -0.2571 1.1152 37 1 5.8557 0.0111 3.5509 38 1 5.9921 1.7784 3.3852 39 1 8.1238 1.6916 4.7108 40 1 7.9827 -0.0784 4.8352 41 1 9.4625 0.6524 4.1677 42 1 10.2602 1.7001 2.9349 43 1 10.1254 0.8292 1.3885 44 1 9.7923 3.5888 0.8880 45 1 13.9116 5.0174 -0.2761 46 1 8.0914 0.8658 0.0895 47 1 8.0560 2.6449 0.0094 48 1 3.6807 4.6493 0.0091 49 1 0.7728 5.0284 1.0254 50 1 1.4948 5.5485 -0.5161 51 1 0.0519 4.5065 -0.5160 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133065445.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:26:49 Heat of formation + Delta-G solvation = -43.483119 kcal Electronic energy + Delta-G solvation = -31302.976891 eV Core-core repulsion = 27202.244541 eV Total energy + Delta-G solvation = -4100.732350 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.28497 -41.13105 -39.46352 -38.82207 -36.87926 -35.41502 -34.18570 -33.69688 -32.87549 -31.82169 -29.56370 -29.22061 -28.01054 -27.33640 -25.59827 -24.67841 -24.03983 -23.47301 -22.59720 -21.44670 -20.48551 -19.66425 -19.16918 -18.19735 -17.65463 -17.23794 -17.09081 -17.01020 -16.74181 -16.32578 -15.90866 -15.47362 -15.41548 -15.28114 -15.04151 -14.94975 -14.69423 -14.52061 -14.32579 -14.17177 -14.14406 -13.47622 -13.40641 -13.36314 -13.13504 -13.09529 -12.85138 -12.69828 -12.69657 -12.61125 -12.27634 -12.08345 -12.01759 -11.90104 -11.82582 -11.55511 -11.33690 -11.26070 -11.01003 -10.97015 -10.65563 -9.80429 -9.53572 -9.30271 -8.06814 -5.38314 -0.44115 -0.03334 1.32298 1.35584 1.42268 1.47916 1.68103 2.02092 2.42672 2.55345 3.01670 3.21217 3.25262 3.49205 3.69967 3.75659 3.78767 3.83694 3.93203 3.97400 3.99989 4.20701 4.30819 4.35471 4.43730 4.46016 4.48598 4.51048 4.54090 4.69787 4.75210 4.75398 4.77307 4.77900 4.82867 4.89426 4.91446 4.94726 4.99632 5.04253 5.09991 5.18816 5.22195 5.30818 5.36986 5.47135 5.55177 5.73545 6.10812 6.17579 6.18337 6.65515 6.85181 7.04284 7.81996 7.98252 9.14735 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013384 B = 0.002879 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.548530 B = 9723.133381 C =11173.977706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.311 6.311 3 C 0.318 3.682 4 C -0.168 4.168 5 C -0.049 4.049 6 C 0.552 3.448 7 O -0.573 6.573 8 N -0.594 5.594 9 C 0.086 3.914 10 C -0.122 4.122 11 C -0.078 4.078 12 H 0.088 0.912 13 C -0.147 4.147 14 C -0.093 4.093 15 H 0.058 0.942 16 C 0.159 3.841 17 N -0.762 5.762 18 C -0.227 4.227 19 H 0.065 0.935 20 C -0.057 4.057 21 N -0.980 5.980 22 Si 0.943 3.057 23 H -0.279 1.279 24 H -0.293 1.293 25 H -0.267 1.267 26 C 0.120 3.880 27 C -0.170 4.170 28 C 0.169 3.831 29 C -0.103 4.103 30 N -0.533 5.533 31 H 0.124 0.876 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.169 0.831 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.050 0.950 42 H 0.040 0.960 43 H 0.031 0.969 44 H 0.361 0.639 45 H 0.258 0.742 46 H 0.084 0.916 47 H 0.057 0.943 48 H 0.144 0.856 49 H 0.097 0.903 50 H 0.091 0.909 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.686 -10.834 5.304 35.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.218 6.218 3 C 0.139 3.861 4 C -0.189 4.189 5 C -0.059 4.059 6 C 0.340 3.660 7 O -0.453 6.453 8 N -0.325 5.325 9 C -0.035 4.035 10 C -0.160 4.160 11 C -0.097 4.097 12 H 0.107 0.893 13 C -0.204 4.204 14 C -0.113 4.113 15 H 0.077 0.923 16 C 0.033 3.967 17 N -0.408 5.408 18 C -0.358 4.358 19 H 0.083 0.917 20 C -0.249 4.249 21 N -0.631 5.631 22 Si 0.771 3.229 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.192 1.192 26 C -0.002 4.002 27 C -0.191 4.191 28 C 0.033 3.967 29 C -0.160 4.160 30 N -0.259 5.259 31 H 0.142 0.858 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.186 0.814 35 H 0.125 0.875 36 H 0.118 0.882 37 H 0.129 0.871 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.049 0.951 44 H 0.194 0.806 45 H 0.067 0.933 46 H 0.102 0.898 47 H 0.076 0.924 48 H 0.162 0.838 49 H 0.116 0.884 50 H 0.109 0.891 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -33.981 -10.826 5.018 36.015 hybrid contribution 1.033 1.470 -0.765 1.952 sum -32.948 -9.356 4.253 34.514 Atomic orbital electron populations 1.23118 0.75408 1.04905 1.02470 1.86250 1.24634 1.23378 1.87498 1.19735 0.89029 0.85202 0.92106 1.21403 0.92591 0.98477 1.06415 1.19936 0.92241 0.94481 0.99270 1.18625 0.86999 0.81184 0.79180 1.90818 1.74023 1.34550 1.45917 1.48132 1.06653 1.32182 1.45510 1.22616 0.98820 0.91668 0.90398 1.21989 0.94226 1.03701 0.96060 1.21090 0.95283 0.97355 0.95979 0.89340 1.21865 1.00802 1.02173 0.95548 1.21637 0.94294 1.00278 0.95079 0.92304 1.20923 0.91380 0.88892 0.95495 1.42878 1.03448 1.24959 1.69468 1.19068 0.83520 1.04493 1.28747 0.91718 1.25340 0.96795 1.00745 1.02013 1.69849 1.12126 1.31804 1.49284 0.85593 0.79106 0.80233 0.77946 1.20484 1.21911 1.19195 1.21604 0.78192 1.02768 0.97646 1.22016 0.94066 0.99353 1.03697 1.21318 0.91366 0.92744 0.91270 1.20873 0.98823 0.91599 1.04713 1.67093 1.41228 0.98644 1.18920 0.85788 0.92036 0.92493 0.81376 0.87549 0.88196 0.87052 0.92369 0.93420 0.90330 0.93116 0.94187 0.95068 0.80630 0.93310 0.89783 0.92398 0.83786 0.88422 0.89051 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.38 113.37 1.18 1.53 16 2 O -0.31 -4.99 10.47 -89.95 -0.94 -5.94 16 3 C 0.32 5.98 7.49 84.80 0.63 6.61 16 4 C -0.17 -3.15 7.41 22.75 0.17 -2.99 16 5 C -0.05 -1.14 5.29 -19.90 -0.11 -1.24 16 6 C 0.55 16.52 7.42 86.88 0.64 17.16 16 7 O -0.57 -22.85 16.32 -3.74 -0.06 -22.91 16 8 N -0.59 -15.12 2.97 -821.98 -2.44 -17.56 16 9 C 0.09 1.36 4.83 86.36 0.42 1.77 16 10 C -0.12 -1.83 5.36 30.67 0.16 -1.67 16 11 C -0.08 -1.55 2.23 -10.76 -0.02 -1.57 16 12 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 13 C -0.15 -2.83 8.82 71.98 0.63 -2.20 16 14 C -0.09 -2.73 1.92 -10.72 -0.02 -2.76 16 15 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 16 C 0.16 5.97 5.41 86.38 0.47 6.44 16 17 N -0.76 -37.30 5.18 -343.46 -1.78 -39.08 16 18 C -0.23 -13.38 10.47 84.03 0.88 -12.49 16 19 H 0.06 4.08 8.06 -2.91 -0.02 4.05 16 20 C -0.06 -3.51 5.50 84.86 0.47 -3.05 16 21 N -0.98 -64.52 13.97 21.65 0.30 -64.22 16 22 Si 0.94 49.36 27.74 68.60 1.90 51.26 16 23 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 24 H -0.29 -15.31 7.11 99.48 0.71 -14.60 16 25 H -0.27 -13.57 6.52 99.48 0.65 -12.92 16 26 C 0.12 3.72 5.52 86.36 0.48 4.20 16 27 C -0.17 -3.67 9.35 22.63 0.21 -3.46 16 28 C 0.17 3.03 6.77 42.48 0.29 3.32 16 29 C -0.10 -1.12 10.16 71.24 0.72 -0.39 16 30 N -0.53 -10.06 9.09 -297.17 -2.70 -12.76 16 31 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.61 8.10 -2.39 -0.02 0.59 16 33 H 0.06 0.61 8.10 -2.39 -0.02 0.59 16 34 H 0.17 2.51 6.19 -2.91 -0.02 2.49 16 35 H 0.11 1.49 4.49 -2.38 -0.01 1.47 16 36 H 0.10 1.16 8.08 -2.39 -0.02 1.14 16 37 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.05 1.15 6.30 -2.39 -0.02 1.13 16 42 H 0.04 1.50 6.15 -2.39 -0.01 1.49 16 43 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 44 H 0.36 17.80 4.76 -92.70 -0.44 17.36 16 45 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 46 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 47 H 0.06 2.31 6.20 -2.39 -0.01 2.29 16 48 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 49 H 0.10 0.80 8.14 -2.39 -0.02 0.79 16 50 H 0.09 0.83 8.08 -2.39 -0.02 0.81 16 51 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -79.78 401.26 1.92 -77.86 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.44 Total: 24.12 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 7.21 Total: 9.22 kcal Atomic # 7 Polarization: -126.99 SS G_CDS: -6.62 Total: -133.62 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -1.00 Total: -28.84 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 1.90 Total: 51.26 kcal Total: -79.78 1.92 -77.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133065445.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.373 kcal (2) G-P(sol) polarization free energy of solvation -79.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds