Wall clock time and date at job start Sat Apr 11 2020 08:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35425 * 117.00344 * 2 1 4 4 N 1.32239 * 119.79719 * 0.27206 * 3 2 1 5 5 C 1.31882 * 121.79257 * 180.31459 * 4 3 2 6 6 C 1.50707 * 119.40362 * 179.72297 * 5 4 3 7 7 C 1.38355 * 121.19149 * 359.69807 * 5 4 3 8 8 C 1.38336 * 119.45460 * 0.02562 * 7 5 4 9 9 C 1.39982 * 118.34969 * 359.97438 * 8 7 5 10 10 C 1.47525 * 120.59738 * 180.02562 * 9 8 7 11 11 O 1.21589 * 120.00272 * 234.15742 * 10 9 8 12 12 N 1.34780 * 119.99560 * 53.88242 * 10 9 8 13 13 C 1.46923 * 120.63326 * 355.79192 * 12 10 9 14 14 C 1.53625 * 108.54083 * 126.36930 * 13 12 10 15 15 C 1.53046 * 109.24063 * 54.85908 * 14 13 12 16 16 H 1.09002 * 109.45814 * 178.49001 * 15 14 13 17 17 C 1.53004 * 109.44803 * 58.52630 * 15 14 13 18 18 C 1.53033 * 109.53919 * 298.51162 * 15 14 13 19 19 H 1.09003 * 109.49811 * 301.41615 * 18 15 14 20 20 C 1.53002 * 109.52834 * 181.33264 * 18 15 14 21 21 N 1.46493 * 109.47525 * 175.14350 * 20 18 15 22 22 C 1.36935 * 120.00093 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99848 * 0.02562 * 22 21 20 24 24 C 1.38806 * 120.00294 * 180.02562 * 22 21 20 25 25 N 1.31621 * 119.99775 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00467 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47190 * 90.00083 * 26 24 22 28 28 H 1.48501 * 109.47248 * 210.00011 * 26 24 22 29 29 H 1.48500 * 109.46778 * 330.00278 * 26 24 22 30 30 C 1.46928 * 120.62849 * 176.08042 * 12 10 9 31 31 H 1.08996 * 109.46957 * 59.99317 * 1 2 3 32 32 H 1.08999 * 109.47104 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.46581 * 300.00025 * 1 2 3 34 34 H 1.08994 * 109.47201 * 269.98212 * 6 5 4 35 35 H 1.09005 * 109.46915 * 29.97787 * 6 5 4 36 36 H 1.08998 * 109.47331 * 149.97641 * 6 5 4 37 37 H 1.08000 * 120.27095 * 179.97438 * 7 5 4 38 38 H 1.08007 * 120.81972 * 179.97438 * 8 7 5 39 39 H 1.08998 * 109.58927 * 246.20456 * 13 12 10 40 40 H 1.08996 * 109.58531 * 6.63587 * 13 12 10 41 41 H 1.08995 * 109.63729 * 294.87012 * 14 13 12 42 42 H 1.09002 * 109.46010 * 174.74528 * 14 13 12 43 43 H 1.08998 * 109.46729 * 299.93862 * 17 15 14 44 44 H 1.09003 * 109.47220 * 59.93401 * 17 15 14 45 45 H 1.08995 * 109.47195 * 179.97438 * 17 15 14 46 46 H 1.08999 * 109.46583 * 295.14850 * 20 18 15 47 47 H 1.09002 * 109.46963 * 55.13906 * 20 18 15 48 48 H 0.97004 * 119.99835 * 359.97438 * 21 20 18 49 49 H 0.97005 * 120.00279 * 179.97438 * 25 24 22 50 50 H 1.09004 * 109.58700 * 353.36534 * 30 12 10 51 51 H 1.09000 * 109.58914 * 113.79882 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2066 0.0000 4 7 1.3199 2.3131 0.0054 5 6 1.8773 3.5083 -0.0005 6 6 1.0003 4.7339 -0.0001 7 6 3.2528 3.6574 -0.0065 8 6 4.0589 2.5331 -0.0069 9 6 3.4450 1.2751 -0.0005 10 6 4.2569 0.0434 0.0000 11 8 4.0733 -0.8062 -0.8502 12 7 5.2061 -0.1376 0.9397 13 6 5.5069 0.9206 1.9135 14 6 5.4033 0.3277 3.3269 15 6 6.3156 -0.8970 3.4282 16 1 6.2652 -1.3047 4.4378 17 6 7.7559 -0.4866 3.1154 18 6 5.8591 -1.9595 2.4259 19 1 4.8247 -2.2342 2.6326 20 6 6.7507 -3.1967 2.5505 21 7 6.2426 -4.2551 1.6743 22 6 6.8839 -5.4637 1.6176 23 1 7.7640 -5.6367 2.2192 24 6 6.4029 -6.4663 0.7870 25 7 5.3306 -6.2553 0.0535 26 14 7.2772 -8.1154 0.7102 27 1 6.7029 -9.0282 1.7310 28 1 7.0989 -8.7078 -0.6398 29 1 8.7248 -7.9210 0.9783 30 6 5.9639 -1.3947 1.0057 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 0.7845 5.0266 -1.0276 35 1 0.0672 4.5127 0.5182 36 1 1.5146 5.5487 0.5094 37 1 3.6936 4.6433 -0.0118 38 1 5.1351 2.6238 -0.0119 39 1 6.5162 1.2962 1.7448 40 1 4.7891 1.7334 1.8032 41 1 4.3733 0.0314 3.5252 42 1 5.7142 1.0744 4.0576 43 1 7.8065 -0.0792 2.1057 44 1 8.0812 0.2703 3.8292 45 1 8.4061 -1.3584 3.1879 46 1 7.7694 -2.9411 2.2588 47 1 6.7453 -3.5459 3.5830 48 1 5.4519 -4.0997 1.1342 49 1 4.9946 -6.9558 -0.5273 50 1 5.5477 -2.1100 0.2964 51 1 7.0097 -1.2040 0.7647 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133153941.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:26:54 Heat of formation + Delta-G solvation = -22.315245 kcal Electronic energy + Delta-G solvation = -31773.768973 eV Core-core repulsion = 27673.954532 eV Total energy + Delta-G solvation = -4099.814442 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.24810 -39.90847 -38.22168 -37.84975 -34.94780 -33.75697 -33.00584 -32.03717 -31.77518 -29.78644 -28.79758 -27.68585 -27.07737 -25.41634 -24.78096 -23.37950 -22.99875 -22.83808 -21.13764 -20.19802 -18.47566 -18.19443 -17.35424 -17.03822 -16.86596 -16.32881 -15.83093 -15.26180 -14.90692 -14.86186 -14.74400 -14.47876 -14.36459 -14.18047 -13.97447 -13.52592 -13.46520 -13.06947 -12.94076 -12.81607 -12.76438 -12.59184 -12.50184 -12.36553 -11.90924 -11.86181 -11.60485 -11.24220 -11.19459 -11.03084 -10.87867 -10.75683 -10.59043 -10.27122 -10.23657 -10.13029 -10.03064 -9.89218 -9.57382 -9.45257 -8.79162 -8.65428 -8.36021 -6.82427 -5.65670 -2.95458 0.58187 0.98035 2.74345 2.92419 3.07235 3.47535 3.49575 3.53919 3.56496 3.84005 4.35338 4.45231 4.64602 4.70476 4.74982 4.88378 4.89478 4.92236 5.06762 5.14080 5.17977 5.19932 5.21140 5.22919 5.29148 5.37553 5.52080 5.55430 5.60672 5.62134 5.66823 5.70594 5.70730 5.74850 5.86567 5.95058 6.00559 6.05835 6.10062 6.21664 6.36919 6.39200 6.41817 6.63722 6.72072 6.83725 6.95527 7.04946 7.49223 7.59826 7.77814 8.35209 8.51876 9.62706 10.21364 10.55452 11.56541 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.002926 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.275566 B = 9565.741264 C =10968.813880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.285 6.285 3 C 0.370 3.630 4 N -0.542 5.542 5 C 0.183 3.817 6 C -0.107 4.107 7 C -0.218 4.218 8 C -0.010 4.010 9 C -0.200 4.200 10 C 0.567 3.433 11 O -0.511 6.511 12 N -0.604 5.604 13 C 0.100 3.900 14 C -0.128 4.128 15 C -0.084 4.084 16 H 0.073 0.927 17 C -0.152 4.152 18 C -0.102 4.102 19 H 0.073 0.927 20 C 0.161 3.839 21 N -0.733 5.733 22 C -0.241 4.241 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.929 5.929 26 Si 0.905 3.095 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.283 1.283 30 C 0.122 3.878 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.142 0.858 38 H 0.147 0.853 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.049 0.951 45 H 0.063 0.937 46 H 0.023 0.977 47 H 0.020 0.980 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.103 0.897 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.623 27.410 4.494 28.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.189 6.189 3 C 0.190 3.810 4 N -0.267 5.267 5 C 0.045 3.955 6 C -0.164 4.164 7 C -0.239 4.239 8 C -0.036 4.036 9 C -0.206 4.206 10 C 0.353 3.647 11 O -0.385 6.385 12 N -0.338 5.338 13 C -0.023 4.023 14 C -0.166 4.166 15 C -0.103 4.103 16 H 0.091 0.909 17 C -0.209 4.209 18 C -0.122 4.122 19 H 0.092 0.908 20 C 0.033 3.967 21 N -0.378 5.378 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.577 5.577 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 C 0.001 3.999 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.160 0.840 38 H 0.164 0.836 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.082 0.918 46 H 0.041 0.959 47 H 0.038 0.962 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.121 0.879 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.415 26.416 4.042 27.482 hybrid contribution 0.813 -0.749 -0.158 1.117 sum -5.602 25.666 3.884 26.556 Atomic orbital electron populations 1.22947 0.76891 1.03570 1.02183 1.86413 1.23051 1.23415 1.86055 1.19691 0.87887 0.84913 0.88513 1.67238 1.40264 0.98175 1.21038 1.21122 0.92140 0.91917 0.90283 1.20798 0.99359 0.92751 1.03491 1.21690 0.93825 0.99761 1.08581 1.21574 1.00762 0.90040 0.91216 1.19901 0.91742 0.95463 1.13527 1.17798 0.79532 0.85646 0.81761 1.90876 1.67320 1.43831 1.36515 1.48054 1.37376 1.17257 1.31091 1.22034 1.01218 0.90295 0.88772 1.22009 1.00628 0.98042 0.95941 1.21070 0.94914 0.94768 0.99598 0.90859 1.21986 0.96163 1.01519 1.01279 1.21690 1.01153 0.95344 0.93991 0.90833 1.20671 0.94822 0.86927 0.94260 1.42429 1.33838 1.11159 1.50356 1.19188 1.07699 0.90065 1.20264 0.91280 1.24758 0.98123 0.98427 0.99648 1.69681 1.24351 1.33374 1.30288 0.86217 0.78845 0.84418 0.76852 1.21824 1.21812 1.20830 1.21757 0.95465 0.84395 0.98282 0.92170 0.88137 0.92261 0.89898 0.90255 0.90172 0.83970 0.83567 0.90948 0.90076 0.91598 0.90982 0.92450 0.93179 0.91755 0.95948 0.96224 0.78079 0.93509 0.87872 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.38 101.05 1.05 1.50 16 2 O -0.28 -4.56 9.69 -20.97 -0.20 -4.76 16 3 C 0.37 5.39 7.50 -16.61 -0.12 5.27 16 4 N -0.54 -6.63 9.11 -9.21 -0.08 -6.71 16 5 C 0.18 1.69 6.78 -82.52 -0.56 1.13 16 6 C -0.11 -0.59 10.16 36.01 0.37 -0.22 16 7 C -0.22 -1.74 9.71 -39.50 -0.38 -2.12 16 8 C -0.01 -0.10 7.55 -38.89 -0.29 -0.40 16 9 C -0.20 -2.80 4.91 -104.69 -0.51 -3.32 16 10 C 0.57 9.79 6.88 -12.47 -0.09 9.70 16 11 O -0.51 -11.35 16.19 2.28 0.04 -11.31 16 12 N -0.60 -9.07 2.97 -173.73 -0.52 -9.58 16 13 C 0.10 1.06 5.11 -3.49 -0.02 1.04 16 14 C -0.13 -1.36 5.64 -26.38 -0.15 -1.51 16 15 C -0.08 -1.06 2.71 -90.58 -0.25 -1.31 16 16 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 17 C -0.15 -1.72 8.11 37.16 0.30 -1.42 16 18 C -0.10 -1.72 2.15 -90.50 -0.19 -1.92 16 19 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 20 C 0.16 3.29 5.19 -4.04 -0.02 3.27 16 21 N -0.73 -19.29 5.38 -59.91 -0.32 -19.61 16 22 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 23 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -29.45 13.06 55.49 0.72 -28.72 16 26 Si 0.91 23.15 29.55 -169.99 -5.02 18.12 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 29 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 30 C 0.12 2.14 5.04 -3.71 -0.02 2.12 16 31 H 0.06 0.64 8.11 -51.93 -0.42 0.22 16 32 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.60 8.10 -51.92 -0.42 0.18 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.27 8.07 -51.93 -0.42 -0.15 16 37 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.15 1.10 7.40 -52.48 -0.39 0.71 16 39 H 0.07 0.65 6.69 -51.93 -0.35 0.30 16 40 H 0.08 0.76 4.71 -51.93 -0.24 0.51 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.65 4.96 -51.93 -0.26 0.39 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 46 H 0.02 0.45 6.73 -51.93 -0.35 0.11 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.39 10.92 6.89 -40.82 -0.28 10.64 16 49 H 0.25 7.82 8.31 -40.82 -0.34 7.48 16 50 H 0.10 2.28 6.23 -51.93 -0.32 1.95 16 51 H 0.07 1.14 6.69 -51.93 -0.35 0.80 16 LS Contribution 399.22 15.07 6.02 6.02 Total: -1.00 -36.68 399.22 -8.42 -45.10 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -7.92 Total: 7.25 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -1.14 Total: 4.22 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: -0.20 Total: -64.64 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.17 Total: -16.07 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.68 -8.42 -45.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133153941.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.785 kcal (2) G-P(sol) polarization free energy of solvation -36.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds