Wall clock time and date at job start Sat Apr 11 2020 08:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35425 * 117.00344 * 2 1 4 4 N 1.32239 * 119.79719 * 0.27206 * 3 2 1 5 5 C 1.31882 * 121.79257 * 180.31459 * 4 3 2 6 6 C 1.50707 * 119.40362 * 179.72297 * 5 4 3 7 7 C 1.38355 * 121.19149 * 359.69807 * 5 4 3 8 8 C 1.38336 * 119.45460 * 0.02562 * 7 5 4 9 9 C 1.39982 * 118.34969 * 359.97438 * 8 7 5 10 10 C 1.47525 * 120.59738 * 180.02562 * 9 8 7 11 11 O 1.21589 * 120.00272 * 234.15742 * 10 9 8 12 12 N 1.34780 * 119.99560 * 53.88242 * 10 9 8 13 13 C 1.46923 * 120.63326 * 355.79192 * 12 10 9 14 14 C 1.53625 * 108.54083 * 126.36930 * 13 12 10 15 15 C 1.53046 * 109.24063 * 54.85908 * 14 13 12 16 16 H 1.09002 * 109.45814 * 178.49001 * 15 14 13 17 17 C 1.53004 * 109.44803 * 58.52630 * 15 14 13 18 18 C 1.53033 * 109.53919 * 298.51162 * 15 14 13 19 19 H 1.09003 * 109.49811 * 301.41615 * 18 15 14 20 20 C 1.53002 * 109.52834 * 181.33264 * 18 15 14 21 21 N 1.46493 * 109.47525 * 175.14350 * 20 18 15 22 22 C 1.36935 * 120.00093 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99848 * 0.02562 * 22 21 20 24 24 C 1.38806 * 120.00294 * 180.02562 * 22 21 20 25 25 N 1.31621 * 119.99775 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00467 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47190 * 90.00083 * 26 24 22 28 28 H 1.48501 * 109.47248 * 210.00011 * 26 24 22 29 29 H 1.48500 * 109.46778 * 330.00278 * 26 24 22 30 30 C 1.46928 * 120.62849 * 176.08042 * 12 10 9 31 31 H 1.08996 * 109.46957 * 59.99317 * 1 2 3 32 32 H 1.08999 * 109.47104 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.46581 * 300.00025 * 1 2 3 34 34 H 1.08994 * 109.47201 * 269.98212 * 6 5 4 35 35 H 1.09005 * 109.46915 * 29.97787 * 6 5 4 36 36 H 1.08998 * 109.47331 * 149.97641 * 6 5 4 37 37 H 1.08000 * 120.27095 * 179.97438 * 7 5 4 38 38 H 1.08007 * 120.81972 * 179.97438 * 8 7 5 39 39 H 1.08998 * 109.58927 * 246.20456 * 13 12 10 40 40 H 1.08996 * 109.58531 * 6.63587 * 13 12 10 41 41 H 1.08995 * 109.63729 * 294.87012 * 14 13 12 42 42 H 1.09002 * 109.46010 * 174.74528 * 14 13 12 43 43 H 1.08998 * 109.46729 * 299.93862 * 17 15 14 44 44 H 1.09003 * 109.47220 * 59.93401 * 17 15 14 45 45 H 1.08995 * 109.47195 * 179.97438 * 17 15 14 46 46 H 1.08999 * 109.46583 * 295.14850 * 20 18 15 47 47 H 1.09002 * 109.46963 * 55.13906 * 20 18 15 48 48 H 0.97004 * 119.99835 * 359.97438 * 21 20 18 49 49 H 0.97005 * 120.00279 * 179.97438 * 25 24 22 50 50 H 1.09004 * 109.58700 * 353.36534 * 30 12 10 51 51 H 1.09000 * 109.58914 * 113.79882 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2066 0.0000 4 7 1.3199 2.3131 0.0054 5 6 1.8773 3.5083 -0.0005 6 6 1.0003 4.7339 -0.0001 7 6 3.2528 3.6574 -0.0065 8 6 4.0589 2.5331 -0.0069 9 6 3.4450 1.2751 -0.0005 10 6 4.2569 0.0434 0.0000 11 8 4.0733 -0.8062 -0.8502 12 7 5.2061 -0.1376 0.9397 13 6 5.5069 0.9206 1.9135 14 6 5.4033 0.3277 3.3269 15 6 6.3156 -0.8970 3.4282 16 1 6.2652 -1.3047 4.4378 17 6 7.7559 -0.4866 3.1154 18 6 5.8591 -1.9595 2.4259 19 1 4.8247 -2.2342 2.6326 20 6 6.7507 -3.1967 2.5505 21 7 6.2426 -4.2551 1.6743 22 6 6.8839 -5.4637 1.6176 23 1 7.7640 -5.6367 2.2192 24 6 6.4029 -6.4663 0.7870 25 7 5.3306 -6.2553 0.0535 26 14 7.2772 -8.1154 0.7102 27 1 6.7029 -9.0282 1.7310 28 1 7.0989 -8.7078 -0.6398 29 1 8.7248 -7.9210 0.9783 30 6 5.9639 -1.3947 1.0057 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 0.7845 5.0266 -1.0276 35 1 0.0672 4.5127 0.5182 36 1 1.5146 5.5487 0.5094 37 1 3.6936 4.6433 -0.0118 38 1 5.1351 2.6238 -0.0119 39 1 6.5162 1.2962 1.7448 40 1 4.7891 1.7334 1.8032 41 1 4.3733 0.0314 3.5252 42 1 5.7142 1.0744 4.0576 43 1 7.8065 -0.0792 2.1057 44 1 8.0812 0.2703 3.8292 45 1 8.4061 -1.3584 3.1879 46 1 7.7694 -2.9411 2.2588 47 1 6.7453 -3.5459 3.5830 48 1 5.4519 -4.0997 1.1342 49 1 4.9946 -6.9558 -0.5273 50 1 5.5477 -2.1100 0.2964 51 1 7.0097 -1.2040 0.7647 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133153941.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:26:53 Heat of formation + Delta-G solvation = -49.691158 kcal Electronic energy + Delta-G solvation = -31774.956082 eV Core-core repulsion = 27673.954532 eV Total energy + Delta-G solvation = -4101.001550 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.22644 -41.04291 -39.18763 -39.15034 -36.66456 -35.14055 -33.96624 -33.49434 -32.79931 -31.46979 -29.57269 -28.72921 -28.17990 -26.96065 -25.85641 -24.97782 -24.12252 -23.64546 -22.57503 -21.40590 -19.72160 -19.22507 -18.94543 -18.35131 -17.99780 -17.37854 -16.95740 -16.79914 -16.30963 -16.07982 -15.72552 -15.64544 -15.34976 -15.30533 -15.03765 -15.02875 -14.61480 -14.53982 -14.25300 -13.96949 -13.82432 -13.50616 -13.37991 -13.05395 -13.05175 -12.91938 -12.87380 -12.76896 -12.62868 -12.43994 -12.17489 -12.11553 -12.01404 -11.91318 -11.74574 -11.42787 -11.27809 -11.22728 -10.95216 -10.84920 -10.56890 -9.67630 -9.45948 -9.01741 -7.94875 -5.25951 -0.26646 0.18521 1.43583 1.47212 1.52404 1.55738 1.93139 2.01814 2.54555 2.60182 3.06219 3.37688 3.45909 3.68013 3.73536 3.79153 3.83528 3.90600 4.05031 4.14644 4.22615 4.26209 4.29465 4.31447 4.34455 4.39569 4.48954 4.56245 4.61585 4.67729 4.71749 4.76603 4.82082 4.83658 4.90443 4.94126 4.96491 5.00091 5.10069 5.16159 5.17406 5.25279 5.29929 5.39898 5.46927 5.48351 5.50756 5.61284 6.13083 6.25061 6.34724 6.72846 7.08592 7.30080 8.06801 8.29133 9.28711 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.002926 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.275566 B = 9565.741264 C =10968.813880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.327 6.327 3 C 0.343 3.657 4 N -0.554 5.554 5 C 0.176 3.824 6 C -0.104 4.104 7 C -0.197 4.197 8 C -0.003 4.003 9 C -0.228 4.228 10 C 0.561 3.439 11 O -0.582 6.582 12 N -0.598 5.598 13 C 0.094 3.906 14 C -0.122 4.122 15 C -0.079 4.079 16 H 0.079 0.921 17 C -0.148 4.148 18 C -0.090 4.090 19 H 0.042 0.958 20 C 0.161 3.839 21 N -0.750 5.750 22 C -0.244 4.244 23 H 0.081 0.919 24 C -0.082 4.082 25 N -0.974 5.974 26 Si 0.979 3.021 27 H -0.285 1.285 28 H -0.298 1.298 29 H -0.264 1.264 30 C 0.132 3.868 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.113 0.887 37 H 0.191 0.809 38 H 0.174 0.826 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.048 0.952 42 H 0.115 0.885 43 H 0.057 0.943 44 H 0.084 0.916 45 H 0.049 0.951 46 H 0.034 0.966 47 H 0.024 0.976 48 H 0.369 0.631 49 H 0.249 0.751 50 H 0.044 0.956 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.748 31.800 6.528 32.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.233 6.233 3 C 0.164 3.836 4 N -0.279 5.279 5 C 0.039 3.961 6 C -0.161 4.161 7 C -0.216 4.216 8 C -0.028 4.028 9 C -0.234 4.234 10 C 0.349 3.651 11 O -0.461 6.461 12 N -0.330 5.330 13 C -0.026 4.026 14 C -0.160 4.160 15 C -0.098 4.098 16 H 0.098 0.902 17 C -0.205 4.205 18 C -0.110 4.110 19 H 0.061 0.939 20 C 0.034 3.966 21 N -0.392 5.392 22 C -0.376 4.376 23 H 0.099 0.901 24 C -0.274 4.274 25 N -0.624 5.624 26 Si 0.807 3.193 27 H -0.212 1.212 28 H -0.224 1.224 29 H -0.189 1.189 30 C 0.009 3.991 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.131 0.869 37 H 0.208 0.792 38 H 0.192 0.808 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.067 0.933 42 H 0.133 0.867 43 H 0.076 0.924 44 H 0.103 0.897 45 H 0.068 0.932 46 H 0.052 0.948 47 H 0.042 0.958 48 H 0.200 0.800 49 H 0.058 0.942 50 H 0.063 0.937 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.496 30.873 6.161 31.801 hybrid contribution 0.204 -1.944 -0.741 2.091 sum -4.291 28.929 5.420 29.744 Atomic orbital electron populations 1.23063 0.75491 1.04196 1.02847 1.86355 1.24865 1.25364 1.86712 1.19906 0.88337 0.85135 0.90187 1.67301 1.40423 0.98613 1.21595 1.21988 0.93810 0.91895 0.88450 1.20945 0.98884 0.91696 1.04568 1.22196 0.92936 1.01056 1.05439 1.21928 1.02314 0.88640 0.89951 1.19797 0.91256 0.95436 1.16906 1.18456 0.79481 0.86170 0.80984 1.90825 1.69297 1.46586 1.39435 1.48125 1.36316 1.17186 1.31383 1.22444 1.03484 0.89298 0.87414 1.22011 0.99201 0.97915 0.96897 1.21064 0.96540 0.94112 0.98038 0.90224 1.21958 0.94308 1.01880 1.02355 1.21547 0.98731 0.95528 0.95174 0.93936 1.20867 0.95798 0.86890 0.93035 1.42715 1.33340 1.12093 1.51050 1.19681 1.07614 0.90893 1.19421 0.90111 1.25704 0.99222 1.02600 0.99877 1.69892 1.26503 1.34407 1.31637 0.85062 0.78471 0.79416 0.76340 1.21242 1.22444 1.18872 1.21400 0.95701 0.84819 0.97175 0.91741 0.87628 0.91202 0.88759 0.90706 0.86897 0.79193 0.80823 0.87845 0.88079 0.93342 0.86702 0.92359 0.89745 0.93239 0.94787 0.95813 0.80002 0.94181 0.93692 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.97 10.38 113.37 1.18 2.14 16 2 O -0.33 -11.49 9.69 -84.33 -0.82 -12.31 16 3 C 0.34 10.43 7.50 85.13 0.64 11.07 16 4 N -0.55 -13.25 9.11 -296.05 -2.70 -15.95 16 5 C 0.18 2.73 6.78 42.58 0.29 3.02 16 6 C -0.10 -0.73 10.16 71.24 0.72 -0.01 16 7 C -0.20 -2.24 9.71 22.32 0.22 -2.03 16 8 C 0.00 -0.05 7.55 22.72 0.17 0.12 16 9 C -0.23 -6.46 4.91 -19.91 -0.10 -6.56 16 10 C 0.56 20.68 6.88 86.69 0.60 21.28 16 11 O -0.58 -28.73 16.19 -1.12 -0.02 -28.74 16 12 N -0.60 -18.42 2.97 -821.83 -2.44 -20.86 16 13 C 0.09 1.75 5.11 86.51 0.44 2.19 16 14 C -0.12 -2.23 5.64 30.82 0.17 -2.06 16 15 C -0.08 -1.83 2.71 -10.77 -0.03 -1.86 16 16 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 17 C -0.15 -2.84 8.11 71.98 0.58 -2.26 16 18 C -0.09 -3.16 2.15 -10.72 -0.02 -3.18 16 19 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 20 C 0.16 6.74 5.19 86.38 0.45 7.19 16 21 N -0.75 -41.54 5.38 -343.47 -1.85 -43.39 16 22 C -0.24 -14.51 9.99 84.03 0.84 -13.67 16 23 H 0.08 4.51 7.83 -2.91 -0.02 4.48 16 24 C -0.08 -5.06 5.50 84.86 0.47 -4.59 16 25 N -0.97 -65.01 13.06 21.65 0.28 -64.73 16 26 Si 0.98 48.81 29.55 68.60 2.03 50.84 16 27 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 28 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 29 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 30 C 0.13 4.90 5.04 86.36 0.44 5.33 16 31 H 0.06 1.49 8.11 -2.39 -0.02 1.47 16 32 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.07 1.52 8.10 -2.38 -0.02 1.51 16 34 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.11 0.10 8.07 -2.39 -0.02 0.08 16 37 H 0.19 0.39 8.06 -2.91 -0.02 0.37 16 38 H 0.17 1.86 7.40 -2.91 -0.02 1.84 16 39 H 0.10 1.35 6.69 -2.39 -0.02 1.34 16 40 H 0.10 1.53 4.71 -2.39 -0.01 1.52 16 41 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.06 1.11 4.96 -2.39 -0.01 1.10 16 44 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.05 1.11 6.57 -2.39 -0.02 1.09 16 46 H 0.03 1.37 6.73 -2.39 -0.02 1.36 16 47 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.37 22.66 6.89 -92.70 -0.64 22.02 16 49 H 0.25 16.13 8.31 -92.70 -0.77 15.36 16 50 H 0.04 2.21 6.23 -2.39 -0.01 2.20 16 51 H 0.08 2.73 6.69 -2.39 -0.02 2.72 16 Total: -1.00 -90.12 399.22 1.85 -88.26 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 0.31 Total: 30.76 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: 7.05 Total: 16.12 kcal Atomic # 7 Polarization: -138.23 SS G_CDS: -6.70 Total: -144.93 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -0.83 Total: -41.05 kcal Atomic # 14 Polarization: 48.81 SS G_CDS: 2.03 Total: 50.84 kcal Total: -90.12 1.85 -88.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133153941.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.572 kcal (2) G-P(sol) polarization free energy of solvation -90.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds