Wall clock time and date at job start Sat Apr 11 2020 08:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35427 * 116.99792 * 2 1 4 4 N 1.32232 * 119.80402 * 359.97438 * 3 2 1 5 5 C 1.31878 * 121.80284 * 180.02562 * 4 3 2 6 6 C 1.50705 * 119.40765 * 180.02562 * 5 4 3 7 7 C 1.38356 * 121.18404 * 0.02562 * 5 4 3 8 8 C 1.38332 * 119.45685 * 359.70042 * 7 5 4 9 9 C 1.39984 * 118.35076 * 0.56313 * 8 7 5 10 10 C 1.47521 * 120.59824 * 179.71452 * 9 8 7 11 11 O 1.21585 * 120.00458 * 132.83810 * 10 9 8 12 12 N 1.34784 * 120.00009 * 312.83498 * 10 9 8 13 13 C 1.46931 * 120.62664 * 354.74981 * 12 10 9 14 14 C 1.53188 * 108.89143 * 233.55323 * 13 12 10 15 15 C 1.53069 * 109.29936 * 305.58446 * 14 13 12 16 16 H 1.09006 * 109.34540 * 301.12674 * 15 14 13 17 17 C 1.53002 * 109.44166 * 181.23639 * 15 14 13 18 18 C 1.53036 * 109.65941 * 61.15005 * 15 14 13 19 19 H 1.08999 * 109.50107 * 58.65420 * 18 15 14 20 20 C 1.53006 * 109.52318 * 178.73460 * 18 15 14 21 21 N 1.46503 * 109.46958 * 184.85491 * 20 18 15 22 22 C 1.36935 * 119.99600 * 179.97438 * 21 20 18 23 23 H 1.08000 * 120.00638 * 0.02562 * 22 21 20 24 24 C 1.38815 * 119.99806 * 179.97438 * 22 21 20 25 25 N 1.31619 * 119.99667 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99937 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47287 * 90.00573 * 26 24 22 28 28 H 1.48502 * 109.47243 * 210.00282 * 26 24 22 29 29 H 1.48497 * 109.47326 * 330.00418 * 26 24 22 30 30 C 1.46919 * 120.63334 * 174.76838 * 12 10 9 31 31 H 1.09005 * 109.47345 * 300.00325 * 1 2 3 32 32 H 1.08997 * 109.47312 * 60.00055 * 1 2 3 33 33 H 1.09002 * 109.47391 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47158 * 89.99702 * 6 5 4 35 35 H 1.09004 * 109.46951 * 209.99895 * 6 5 4 36 36 H 1.09002 * 109.46876 * 329.99243 * 6 5 4 37 37 H 1.08001 * 120.27096 * 179.97438 * 7 5 4 38 38 H 1.08007 * 120.82422 * 180.27935 * 8 7 5 39 39 H 1.08996 * 109.58923 * 353.41619 * 13 12 10 40 40 H 1.09000 * 109.58642 * 113.69935 * 13 12 10 41 41 H 1.09003 * 109.49630 * 65.39360 * 14 13 12 42 42 H 1.09006 * 109.49852 * 185.48360 * 14 13 12 43 43 H 1.08997 * 109.47052 * 299.78879 * 17 15 14 44 44 H 1.08999 * 109.47491 * 59.79536 * 17 15 14 45 45 H 1.09001 * 109.46750 * 179.79370 * 17 15 14 46 46 H 1.08995 * 109.46835 * 304.85585 * 20 18 15 47 47 H 1.09000 * 109.46844 * 64.85564 * 20 18 15 48 48 H 0.96995 * 119.99933 * 0.02562 * 21 20 18 49 49 H 0.97002 * 119.99224 * 179.97438 * 25 24 22 50 50 H 1.08998 * 109.59282 * 246.16033 * 30 12 10 51 51 H 1.09001 * 109.58549 * 6.58572 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3197 2.3132 -0.0005 5 6 1.8771 3.5084 -0.0010 6 6 0.9999 4.7339 -0.0010 7 6 3.2526 3.6575 -0.0016 8 6 4.0587 2.5333 0.0047 9 6 3.4449 1.2752 -0.0007 10 6 4.2569 0.0436 -0.0007 11 8 3.9910 -0.8600 0.7682 12 7 5.2936 -0.0802 -0.8532 13 6 5.5576 0.9517 -1.8653 14 6 5.6373 0.2863 -3.2428 15 6 6.6746 -0.8386 -3.2021 16 1 7.6435 -0.4263 -2.9199 17 6 6.7791 -1.4853 -4.5847 18 6 6.2510 -1.8927 -2.1768 19 1 5.2711 -2.2878 -2.4447 20 6 7.2735 -3.0308 -2.1612 21 7 6.8086 -4.0928 -1.2655 22 6 7.5647 -5.2210 -1.0908 23 1 8.5041 -5.3278 -1.6130 24 6 7.1244 -6.2271 -0.2417 25 7 5.9799 -6.0967 0.3951 26 14 8.1556 -7.7664 -0.0040 27 1 9.0946 -7.5633 1.1284 28 1 7.2654 -8.9177 0.2916 29 1 8.9265 -8.0420 -1.2429 30 6 6.1807 -1.2495 -0.7882 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 0.7888 5.0296 1.0266 35 1 1.5120 5.5472 -0.5153 36 1 0.0646 4.5112 -0.5146 37 1 3.6933 4.6435 -0.0024 38 1 5.1349 2.6240 0.0089 39 1 4.7506 1.6843 -1.8595 40 1 6.5027 1.4474 -1.6438 41 1 4.6636 -0.1287 -3.5033 42 1 5.9289 1.0264 -3.9881 43 1 5.8106 -1.8981 -4.8669 44 1 7.0809 -0.7347 -5.3152 45 1 7.5204 -2.2840 -4.5571 46 1 7.3884 -3.4298 -3.1690 47 1 8.2330 -2.6523 -1.8087 48 1 5.9648 -3.9971 -0.7968 49 1 5.6722 -6.7999 0.9881 50 1 7.1779 -0.9350 -0.4803 51 1 5.7848 -1.9692 -0.0717 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133153942.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:26:59 Heat of formation + Delta-G solvation = -25.968405 kcal Electronic energy + Delta-G solvation = -31570.016245 eV Core-core repulsion = 27470.043390 eV Total energy + Delta-G solvation = -4099.972855 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.23248 -39.77294 -38.22638 -37.74221 -34.98575 -33.80108 -33.16744 -32.03907 -31.78314 -29.77358 -28.90629 -28.10449 -27.01910 -25.46471 -23.85894 -23.37710 -23.00738 -22.51092 -21.17583 -20.19666 -19.30678 -18.31744 -17.35518 -17.07441 -16.88547 -16.32049 -15.77987 -15.14891 -14.86886 -14.78988 -14.47702 -14.42544 -14.30291 -14.14886 -13.87012 -13.63280 -13.36616 -13.04915 -13.00348 -12.91455 -12.71755 -12.61142 -12.50100 -12.36269 -11.88304 -11.85341 -11.69080 -11.48822 -11.22257 -10.94494 -10.86104 -10.74825 -10.55750 -10.27013 -10.22684 -10.10446 -10.03252 -9.88977 -9.56781 -9.44979 -8.78910 -8.66520 -8.40016 -6.81589 -5.65229 -2.94912 0.55441 0.98155 2.76232 2.92508 3.07001 3.49784 3.50077 3.54106 3.56552 3.83124 4.35269 4.45770 4.64249 4.69236 4.74454 4.87336 4.90812 4.91261 5.04247 5.13244 5.17101 5.18874 5.19947 5.20760 5.30226 5.41344 5.50629 5.55804 5.61658 5.66147 5.69607 5.71295 5.72830 5.77506 5.86183 5.96226 6.01237 6.07040 6.09813 6.23989 6.29186 6.37693 6.50098 6.63322 6.71681 6.87183 6.96035 7.04627 7.48517 7.59805 7.78154 8.36173 8.52352 9.63177 10.22045 10.56169 11.56963 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.002839 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.026856 B = 9859.162939 C =11139.622468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.282 6.282 3 C 0.371 3.629 4 N -0.543 5.543 5 C 0.184 3.816 6 C -0.107 4.107 7 C -0.220 4.220 8 C -0.008 4.008 9 C -0.203 4.203 10 C 0.565 3.435 11 O -0.508 6.508 12 N -0.606 5.606 13 C 0.103 3.897 14 C -0.128 4.128 15 C -0.084 4.084 16 H 0.071 0.929 17 C -0.148 4.148 18 C -0.102 4.102 19 H 0.074 0.926 20 C 0.159 3.841 21 N -0.733 5.733 22 C -0.241 4.241 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.928 5.928 26 Si 0.905 3.095 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 C 0.122 3.878 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.142 0.858 38 H 0.147 0.853 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.053 0.947 44 H 0.048 0.952 45 H 0.065 0.935 46 H 0.027 0.973 47 H 0.018 0.982 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.066 0.934 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.652 26.721 -6.104 28.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.187 6.187 3 C 0.191 3.809 4 N -0.269 5.269 5 C 0.047 3.953 6 C -0.164 4.164 7 C -0.240 4.240 8 C -0.034 4.034 9 C -0.209 4.209 10 C 0.351 3.649 11 O -0.383 6.383 12 N -0.340 5.340 13 C -0.020 4.020 14 C -0.166 4.166 15 C -0.103 4.103 16 H 0.089 0.911 17 C -0.205 4.205 18 C -0.121 4.121 19 H 0.093 0.907 20 C 0.031 3.969 21 N -0.378 5.378 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.577 5.577 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.209 1.209 30 C 0.000 4.000 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.160 0.840 38 H 0.165 0.835 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.044 0.956 47 H 0.036 0.964 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.085 0.915 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.486 25.701 -5.686 27.657 hybrid contribution 0.929 -0.671 0.285 1.181 sum -7.557 25.031 -5.401 26.699 Atomic orbital electron populations 1.22944 0.77006 1.03523 1.02177 1.86434 1.22927 1.23348 1.85968 1.19719 0.87955 0.84898 0.88304 1.67234 1.40300 0.98182 1.21146 1.21130 0.92151 0.91918 0.90118 1.20802 0.99359 0.92757 1.03501 1.21699 0.93817 0.99792 1.08679 1.21621 1.00828 0.90057 0.90855 1.19932 0.91682 0.95436 1.13840 1.17808 0.79850 0.86052 0.81149 1.90883 1.67829 1.40036 1.39533 1.48051 1.29378 1.23227 1.33365 1.21879 1.01402 0.90529 0.88201 1.21985 1.00392 0.98255 0.96015 1.21089 0.98412 0.95049 0.95725 0.91089 1.21879 1.02357 1.00631 0.95612 1.21709 1.01049 0.95536 0.93823 0.90750 1.20715 0.94044 0.87806 0.94312 1.42428 1.25207 1.17483 1.52651 1.19188 1.01629 0.94828 1.21556 0.91291 1.24761 0.97416 0.98793 1.00016 1.69685 1.20900 1.34256 1.32828 0.86218 0.79185 0.83201 0.77732 1.21788 1.21841 1.20861 1.21746 0.92796 0.86755 0.98665 0.92173 0.92291 0.88181 0.89879 0.90156 0.90253 0.83971 0.83527 0.90106 0.91343 0.91561 0.90892 0.92802 0.93276 0.91608 0.95574 0.96436 0.78057 0.93517 0.91542 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.38 101.05 1.05 1.48 16 2 O -0.28 -4.47 9.48 -28.83 -0.27 -4.75 16 3 C 0.37 5.37 7.48 -16.61 -0.12 5.25 16 4 N -0.54 -6.59 9.11 -9.21 -0.08 -6.68 16 5 C 0.18 1.69 6.78 -82.53 -0.56 1.13 16 6 C -0.11 -0.58 10.16 36.01 0.37 -0.22 16 7 C -0.22 -1.74 9.71 -39.50 -0.38 -2.13 16 8 C -0.01 -0.08 7.63 -38.89 -0.30 -0.38 16 9 C -0.20 -2.83 4.90 -104.69 -0.51 -3.34 16 10 C 0.57 9.75 7.01 -12.47 -0.09 9.67 16 11 O -0.51 -11.31 15.88 -5.57 -0.09 -11.40 16 12 N -0.61 -9.08 2.97 -174.01 -0.52 -9.60 16 13 C 0.10 1.09 5.23 -3.71 -0.02 1.07 16 14 C -0.13 -1.36 5.37 -26.60 -0.14 -1.50 16 15 C -0.08 -1.05 2.22 -90.56 -0.20 -1.26 16 16 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 17 C -0.15 -1.78 8.81 37.16 0.33 -1.45 16 18 C -0.10 -1.71 1.92 -90.50 -0.17 -1.89 16 19 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 20 C 0.16 3.25 5.41 -4.04 -0.02 3.22 16 21 N -0.73 -19.28 5.38 -59.90 -0.32 -19.60 16 22 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 23 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 24 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 25 N -0.93 -29.47 13.06 55.49 0.72 -28.75 16 26 Si 0.91 23.15 29.55 -169.99 -5.02 18.13 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 29 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 30 C 0.12 2.13 5.53 -3.71 -0.02 2.11 16 31 H 0.06 0.63 8.11 -51.93 -0.42 0.21 16 32 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.26 8.07 -51.93 -0.42 -0.16 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.15 1.11 7.28 -52.48 -0.38 0.73 16 39 H 0.08 0.76 5.05 -51.93 -0.26 0.49 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.87 6.30 -51.93 -0.33 0.54 16 46 H 0.03 0.54 6.15 -51.93 -0.32 0.22 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.39 10.94 6.89 -40.82 -0.28 10.65 16 49 H 0.25 7.83 8.31 -40.82 -0.34 7.49 16 50 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 51 H 0.10 2.30 6.20 -51.93 -0.32 1.98 16 LS Contribution 404.83 15.07 6.10 6.10 Total: -1.00 -36.68 404.83 -8.73 -45.41 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -8.20 Total: 6.96 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -1.05 Total: 4.17 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: -0.20 Total: -64.62 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.36 Total: -16.14 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.13 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.68 -8.73 -45.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133153942.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.441 kcal (2) G-P(sol) polarization free energy of solvation -36.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds