Wall clock time and date at job start Sat Apr 11 2020 08:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35427 * 116.99792 * 2 1 4 4 N 1.32232 * 119.80402 * 359.97438 * 3 2 1 5 5 C 1.31878 * 121.80284 * 180.02562 * 4 3 2 6 6 C 1.50705 * 119.40765 * 180.02562 * 5 4 3 7 7 C 1.38356 * 121.18404 * 0.02562 * 5 4 3 8 8 C 1.38332 * 119.45685 * 359.70042 * 7 5 4 9 9 C 1.39984 * 118.35076 * 0.56313 * 8 7 5 10 10 C 1.47521 * 120.59824 * 179.71452 * 9 8 7 11 11 O 1.21585 * 120.00458 * 132.83810 * 10 9 8 12 12 N 1.34784 * 120.00009 * 312.83498 * 10 9 8 13 13 C 1.46931 * 120.62664 * 354.74981 * 12 10 9 14 14 C 1.53188 * 108.89143 * 233.55323 * 13 12 10 15 15 C 1.53069 * 109.29936 * 305.58446 * 14 13 12 16 16 H 1.09006 * 109.34540 * 301.12674 * 15 14 13 17 17 C 1.53002 * 109.44166 * 181.23639 * 15 14 13 18 18 C 1.53036 * 109.65941 * 61.15005 * 15 14 13 19 19 H 1.08999 * 109.50107 * 58.65420 * 18 15 14 20 20 C 1.53006 * 109.52318 * 178.73460 * 18 15 14 21 21 N 1.46503 * 109.46958 * 184.85491 * 20 18 15 22 22 C 1.36935 * 119.99600 * 179.97438 * 21 20 18 23 23 H 1.08000 * 120.00638 * 0.02562 * 22 21 20 24 24 C 1.38815 * 119.99806 * 179.97438 * 22 21 20 25 25 N 1.31619 * 119.99667 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99937 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47287 * 90.00573 * 26 24 22 28 28 H 1.48502 * 109.47243 * 210.00282 * 26 24 22 29 29 H 1.48497 * 109.47326 * 330.00418 * 26 24 22 30 30 C 1.46919 * 120.63334 * 174.76838 * 12 10 9 31 31 H 1.09005 * 109.47345 * 300.00325 * 1 2 3 32 32 H 1.08997 * 109.47312 * 60.00055 * 1 2 3 33 33 H 1.09002 * 109.47391 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47158 * 89.99702 * 6 5 4 35 35 H 1.09004 * 109.46951 * 209.99895 * 6 5 4 36 36 H 1.09002 * 109.46876 * 329.99243 * 6 5 4 37 37 H 1.08001 * 120.27096 * 179.97438 * 7 5 4 38 38 H 1.08007 * 120.82422 * 180.27935 * 8 7 5 39 39 H 1.08996 * 109.58923 * 353.41619 * 13 12 10 40 40 H 1.09000 * 109.58642 * 113.69935 * 13 12 10 41 41 H 1.09003 * 109.49630 * 65.39360 * 14 13 12 42 42 H 1.09006 * 109.49852 * 185.48360 * 14 13 12 43 43 H 1.08997 * 109.47052 * 299.78879 * 17 15 14 44 44 H 1.08999 * 109.47491 * 59.79536 * 17 15 14 45 45 H 1.09001 * 109.46750 * 179.79370 * 17 15 14 46 46 H 1.08995 * 109.46835 * 304.85585 * 20 18 15 47 47 H 1.09000 * 109.46844 * 64.85564 * 20 18 15 48 48 H 0.96995 * 119.99933 * 0.02562 * 21 20 18 49 49 H 0.97002 * 119.99224 * 179.97438 * 25 24 22 50 50 H 1.08998 * 109.59282 * 246.16033 * 30 12 10 51 51 H 1.09001 * 109.58549 * 6.58572 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3197 2.3132 -0.0005 5 6 1.8771 3.5084 -0.0010 6 6 0.9999 4.7339 -0.0010 7 6 3.2526 3.6575 -0.0016 8 6 4.0587 2.5333 0.0047 9 6 3.4449 1.2752 -0.0007 10 6 4.2569 0.0436 -0.0007 11 8 3.9910 -0.8600 0.7682 12 7 5.2936 -0.0802 -0.8532 13 6 5.5576 0.9517 -1.8653 14 6 5.6373 0.2863 -3.2428 15 6 6.6746 -0.8386 -3.2021 16 1 7.6435 -0.4263 -2.9199 17 6 6.7791 -1.4853 -4.5847 18 6 6.2510 -1.8927 -2.1768 19 1 5.2711 -2.2878 -2.4447 20 6 7.2735 -3.0308 -2.1612 21 7 6.8086 -4.0928 -1.2655 22 6 7.5647 -5.2210 -1.0908 23 1 8.5041 -5.3278 -1.6130 24 6 7.1244 -6.2271 -0.2417 25 7 5.9799 -6.0967 0.3951 26 14 8.1556 -7.7664 -0.0040 27 1 9.0946 -7.5633 1.1284 28 1 7.2654 -8.9177 0.2916 29 1 8.9265 -8.0420 -1.2429 30 6 6.1807 -1.2495 -0.7882 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 0.7888 5.0296 1.0266 35 1 1.5120 5.5472 -0.5153 36 1 0.0646 4.5112 -0.5146 37 1 3.6933 4.6435 -0.0024 38 1 5.1349 2.6240 0.0089 39 1 4.7506 1.6843 -1.8595 40 1 6.5027 1.4474 -1.6438 41 1 4.6636 -0.1287 -3.5033 42 1 5.9289 1.0264 -3.9881 43 1 5.8106 -1.8981 -4.8669 44 1 7.0809 -0.7347 -5.3152 45 1 7.5204 -2.2840 -4.5571 46 1 7.3884 -3.4298 -3.1690 47 1 8.2330 -2.6523 -1.8087 48 1 5.9648 -3.9971 -0.7968 49 1 5.6722 -6.7999 0.9881 50 1 7.1779 -0.9350 -0.4803 51 1 5.7848 -1.9692 -0.0717 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133153942.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:26:57 Heat of formation + Delta-G solvation = -52.751506 kcal Electronic energy + Delta-G solvation = -31571.177647 eV Core-core repulsion = 27470.043390 eV Total energy + Delta-G solvation = -4101.134257 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.19173 -40.92009 -39.15494 -39.07100 -36.64752 -35.25020 -34.07236 -33.50484 -32.79338 -31.45895 -29.74643 -29.11912 -28.07401 -27.03931 -25.10554 -24.75517 -24.07945 -23.37015 -22.59128 -21.44934 -20.47724 -19.25336 -19.14215 -18.31985 -18.01664 -17.36518 -16.93875 -16.75359 -16.16873 -15.88252 -15.61796 -15.46441 -15.39477 -15.21342 -15.10075 -15.00054 -14.58637 -14.31291 -14.21454 -14.11230 -13.95055 -13.50091 -13.36891 -13.11297 -13.05452 -12.98125 -12.79455 -12.76094 -12.65056 -12.62704 -12.17570 -12.11941 -12.00228 -11.90765 -11.78405 -11.38499 -11.25602 -11.18141 -10.94356 -10.84843 -10.57178 -9.71940 -9.46529 -9.00288 -7.94269 -5.25110 -0.29315 0.19359 1.43788 1.47457 1.55843 1.58228 1.92746 2.02881 2.54996 2.62053 3.06221 3.38264 3.47288 3.66504 3.73291 3.79197 3.85243 3.89798 4.03181 4.15193 4.23477 4.26282 4.30061 4.31878 4.34715 4.41118 4.53068 4.58665 4.62079 4.71393 4.74532 4.78179 4.82293 4.83510 4.92858 4.94505 4.95947 4.99708 5.06572 5.12005 5.17289 5.22980 5.28057 5.43575 5.47822 5.48680 5.53548 5.57470 6.13822 6.25718 6.35605 6.73066 7.10620 7.30709 8.07898 8.30063 9.29340 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.002839 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.026856 B = 9859.162939 C =11139.622468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.324 6.324 3 C 0.345 3.655 4 N -0.555 5.555 5 C 0.178 3.822 6 C -0.104 4.104 7 C -0.199 4.199 8 C 0.000 4.000 9 C -0.230 4.230 10 C 0.559 3.441 11 O -0.580 6.580 12 N -0.600 5.600 13 C 0.097 3.903 14 C -0.122 4.122 15 C -0.077 4.077 16 H 0.092 0.908 17 C -0.145 4.145 18 C -0.088 4.088 19 H 0.041 0.959 20 C 0.158 3.842 21 N -0.749 5.749 22 C -0.243 4.243 23 H 0.081 0.919 24 C -0.083 4.083 25 N -0.974 5.974 26 Si 0.979 3.021 27 H -0.286 1.286 28 H -0.298 1.298 29 H -0.264 1.264 30 C 0.129 3.871 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.074 0.926 37 H 0.190 0.810 38 H 0.174 0.826 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.046 0.954 42 H 0.116 0.884 43 H 0.040 0.960 44 H 0.082 0.918 45 H 0.051 0.949 46 H 0.033 0.967 47 H 0.028 0.972 48 H 0.368 0.632 49 H 0.249 0.751 50 H 0.081 0.919 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.759 31.203 -8.133 32.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.230 6.230 3 C 0.166 3.834 4 N -0.281 5.281 5 C 0.040 3.960 6 C -0.161 4.161 7 C -0.218 4.218 8 C -0.025 4.025 9 C -0.236 4.236 10 C 0.347 3.653 11 O -0.460 6.460 12 N -0.333 5.333 13 C -0.024 4.024 14 C -0.160 4.160 15 C -0.096 4.096 16 H 0.110 0.890 17 C -0.202 4.202 18 C -0.108 4.108 19 H 0.059 0.941 20 C 0.031 3.969 21 N -0.392 5.392 22 C -0.375 4.375 23 H 0.099 0.901 24 C -0.275 4.275 25 N -0.625 5.625 26 Si 0.807 3.193 27 H -0.213 1.213 28 H -0.224 1.224 29 H -0.189 1.189 30 C 0.006 3.994 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.131 0.869 36 H 0.093 0.907 37 H 0.208 0.792 38 H 0.191 0.809 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.065 0.935 42 H 0.134 0.866 43 H 0.059 0.941 44 H 0.101 0.899 45 H 0.070 0.930 46 H 0.051 0.949 47 H 0.046 0.954 48 H 0.200 0.800 49 H 0.058 0.942 50 H 0.099 0.901 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.546 30.255 -7.797 31.922 hybrid contribution 0.315 -1.892 0.865 2.104 sum -6.231 28.363 -6.933 29.856 Atomic orbital electron populations 1.23067 0.75574 1.04210 1.02821 1.86378 1.24764 1.25250 1.86588 1.19941 0.88417 0.85134 0.89893 1.67299 1.40457 0.98614 1.21716 1.21994 0.93807 0.91906 0.88257 1.20950 0.98889 0.91697 1.04581 1.22199 0.92943 1.01068 1.05610 1.21959 1.02328 0.88665 0.89583 1.19821 0.91218 0.95385 1.17223 1.18476 0.79950 0.86553 0.80274 1.90833 1.69779 1.42852 1.42547 1.48125 1.28187 1.23165 1.33774 1.22295 1.03854 0.89581 0.86656 1.21989 0.98693 0.98255 0.97094 1.21090 0.99975 0.94183 0.94306 0.88972 1.21856 1.01304 1.01101 0.95967 1.21560 0.98372 0.95794 0.95084 0.94051 1.20923 0.95231 0.87536 0.93168 1.42715 1.24484 1.18517 1.53468 1.19683 1.01835 0.95379 1.20602 0.90095 1.25706 0.98846 1.02511 1.00419 1.69897 1.23190 1.35229 1.34149 0.85063 0.77389 0.78631 0.78213 1.21303 1.22438 1.18874 1.21424 0.93381 0.86997 0.97607 0.91803 0.91210 0.87574 0.88750 0.86898 0.90676 0.79240 0.80863 0.88295 0.87763 0.93529 0.86592 0.94097 0.89936 0.93026 0.94876 0.95397 0.80014 0.94211 0.90129 0.93466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.93 10.38 113.37 1.18 2.11 16 2 O -0.32 -11.28 9.48 -76.84 -0.73 -12.00 16 3 C 0.34 10.41 7.48 85.13 0.64 11.05 16 4 N -0.56 -13.17 9.11 -296.06 -2.70 -15.87 16 5 C 0.18 2.73 6.78 42.58 0.29 3.02 16 6 C -0.10 -0.72 10.16 71.24 0.72 0.00 16 7 C -0.20 -2.25 9.71 22.32 0.22 -2.04 16 8 C 0.00 0.00 7.63 22.72 0.17 0.17 16 9 C -0.23 -6.50 4.90 -19.91 -0.10 -6.60 16 10 C 0.56 20.58 7.01 86.69 0.61 21.19 16 11 O -0.58 -28.76 15.88 6.40 0.10 -28.66 16 12 N -0.60 -18.34 2.97 -822.69 -2.45 -20.79 16 13 C 0.10 1.76 5.23 86.36 0.45 2.21 16 14 C -0.12 -2.22 5.37 30.68 0.16 -2.05 16 15 C -0.08 -1.76 2.22 -10.76 -0.02 -1.79 16 16 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 17 C -0.15 -3.18 8.81 71.98 0.63 -2.55 16 18 C -0.09 -3.08 1.92 -10.71 -0.02 -3.10 16 19 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 20 C 0.16 6.58 5.41 86.38 0.47 7.05 16 21 N -0.75 -41.44 5.38 -343.44 -1.85 -43.29 16 22 C -0.24 -14.41 9.99 84.03 0.84 -13.57 16 23 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 24 C -0.08 -5.11 5.50 84.86 0.47 -4.64 16 25 N -0.97 -65.10 13.06 21.65 0.28 -64.81 16 26 Si 0.98 48.81 29.55 68.60 2.03 50.84 16 27 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 28 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 29 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 30 C 0.13 4.74 5.53 86.36 0.48 5.22 16 31 H 0.06 1.45 8.11 -2.38 -0.02 1.43 16 32 H 0.07 1.49 8.10 -2.39 -0.02 1.47 16 33 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.09 0.51 8.14 -2.39 -0.02 0.50 16 35 H 0.11 0.09 8.07 -2.39 -0.02 0.07 16 36 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.19 0.39 8.06 -2.91 -0.02 0.37 16 38 H 0.17 1.87 7.28 -2.91 -0.02 1.85 16 39 H 0.10 1.50 5.05 -2.39 -0.01 1.49 16 40 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 43 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.05 1.27 6.30 -2.39 -0.02 1.26 16 46 H 0.03 1.36 6.15 -2.39 -0.01 1.34 16 47 H 0.03 1.12 8.14 -2.39 -0.02 1.11 16 48 H 0.37 22.66 6.89 -92.71 -0.64 22.02 16 49 H 0.25 16.14 8.31 -92.71 -0.77 15.37 16 50 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 51 H 0.05 2.31 6.20 -2.39 -0.01 2.29 16 Total: -1.00 -90.31 404.83 2.17 -88.14 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: 0.30 Total: 30.76 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: 7.18 Total: 15.68 kcal Atomic # 7 Polarization: -138.05 SS G_CDS: -6.71 Total: -144.75 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -0.63 Total: -40.67 kcal Atomic # 14 Polarization: 48.81 SS G_CDS: 2.03 Total: 50.84 kcal Total: -90.31 2.17 -88.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133153942.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.387 kcal (2) G-P(sol) polarization free energy of solvation -90.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds