Wall clock time and date at job start Sat Apr 11 2020 08:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35431 * 117.00186 * 2 1 4 4 N 1.32240 * 119.79911 * 0.28792 * 3 2 1 5 5 C 1.31878 * 121.80138 * 180.33936 * 4 3 2 6 6 C 1.50698 * 119.41145 * 179.67877 * 5 4 3 7 7 C 1.38364 * 121.18084 * 359.65664 * 5 4 3 8 8 C 1.38328 * 119.45997 * 0.02562 * 7 5 4 9 9 C 1.39982 * 118.35346 * 359.97438 * 8 7 5 10 10 C 1.47522 * 120.59975 * 180.02562 * 9 8 7 11 11 O 1.21592 * 119.99691 * 233.76011 * 10 9 8 12 12 N 1.34774 * 119.99932 * 53.75995 * 10 9 8 13 13 C 1.46928 * 120.62770 * 175.77676 * 12 10 9 14 14 C 1.53189 * 108.89224 * 233.67253 * 13 12 10 15 15 C 1.53043 * 109.31608 * 305.29659 * 14 13 12 16 16 H 1.08992 * 109.46459 * 181.38299 * 15 14 13 17 17 C 1.52998 * 109.45757 * 301.34609 * 15 14 13 18 18 C 1.53039 * 109.53612 * 61.36202 * 15 14 13 19 19 H 1.09000 * 109.49750 * 58.58721 * 18 15 14 20 20 C 1.53003 * 109.49932 * 178.68715 * 18 15 14 21 21 N 1.46498 * 109.47160 * 185.00231 * 20 18 15 22 22 C 1.36941 * 119.99872 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99996 * 0.02562 * 22 21 20 24 24 C 1.38809 * 120.00138 * 179.97438 * 22 21 20 25 25 N 1.31617 * 119.99826 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00284 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47351 * 89.99637 * 26 24 22 28 28 H 1.48496 * 109.47177 * 210.00280 * 26 24 22 29 29 H 1.48502 * 109.47000 * 330.00112 * 26 24 22 30 30 C 1.47195 * 120.81317 * 355.91409 * 12 10 9 31 31 H 1.09000 * 109.46651 * 60.00027 * 1 2 3 32 32 H 1.08993 * 109.46804 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46714 * 300.00506 * 1 2 3 34 34 H 1.08998 * 109.46965 * 269.97885 * 6 5 4 35 35 H 1.09007 * 109.46597 * 29.97565 * 6 5 4 36 36 H 1.08995 * 109.47023 * 149.97786 * 6 5 4 37 37 H 1.08001 * 120.26244 * 180.02562 * 7 5 4 38 38 H 1.08003 * 120.82062 * 179.97438 * 8 7 5 39 39 H 1.09002 * 109.58429 * 113.81478 * 13 12 10 40 40 H 1.08999 * 109.59039 * 353.53167 * 13 12 10 41 41 H 1.08996 * 109.49815 * 65.24775 * 14 13 12 42 42 H 1.09003 * 109.49802 * 185.34222 * 14 13 12 43 43 H 1.09001 * 109.47135 * 59.99842 * 17 15 14 44 44 H 1.09008 * 109.47162 * 179.97438 * 17 15 14 45 45 H 1.08998 * 109.47167 * 299.99739 * 17 15 14 46 46 H 1.09007 * 109.46541 * 305.00145 * 20 18 15 47 47 H 1.08997 * 109.46866 * 64.99764 * 20 18 15 48 48 H 0.97001 * 120.00223 * 359.97438 * 21 20 18 49 49 H 0.97004 * 119.99761 * 179.97438 * 25 24 22 50 50 H 1.08999 * 109.53795 * 6.54210 * 30 12 10 51 51 H 1.09002 * 109.68003 * 246.22907 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2067 0.0000 4 7 1.3198 2.3132 0.0058 5 6 1.8771 3.5084 -0.0006 6 6 1.0001 4.7339 -0.0009 7 6 3.2527 3.6575 -0.0067 8 6 4.0588 2.5333 -0.0065 9 6 3.4451 1.2752 0.0004 10 6 4.2571 0.0436 0.0014 11 8 4.0685 -0.8096 -0.8442 12 7 5.2078 -0.1359 0.9396 13 6 5.9613 -1.3953 1.0105 14 6 5.8578 -1.9559 2.4323 15 6 6.3213 -0.8926 3.4307 16 1 6.2720 -1.2974 4.4415 17 6 7.7626 -0.4892 3.1132 18 6 5.4139 0.3355 3.3284 19 1 4.3831 0.0441 3.5302 20 6 5.8578 1.3850 4.3495 21 7 4.9184 2.5090 4.3345 22 6 5.1129 3.5751 5.1716 23 1 5.9591 3.5875 5.8426 24 6 4.2231 4.6404 5.1570 25 7 3.1922 4.6256 4.3389 26 14 4.4888 6.0951 6.2983 27 1 5.3306 7.1114 5.6174 28 1 3.1764 6.6944 6.6501 29 1 5.1706 5.6358 7.5351 30 6 5.5123 0.9221 1.9166 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 0.7845 5.0262 -1.0286 35 1 0.0669 4.5129 0.5174 36 1 1.5144 5.5489 0.5083 37 1 3.6933 4.6435 -0.0115 38 1 5.1350 2.6241 -0.0116 39 1 7.0072 -1.2096 0.7661 40 1 5.5426 -2.1119 0.3038 41 1 4.8229 -2.2258 2.6426 42 1 6.4900 -2.8393 2.5220 43 1 7.8124 -0.0849 2.1022 44 1 8.0928 0.2685 3.8239 45 1 8.4093 -1.3635 3.1871 46 1 5.8754 0.9393 5.3442 47 1 6.8554 1.7417 4.0935 48 1 4.1586 2.4980 3.7315 49 1 2.5702 5.3698 4.3289 50 1 4.7951 1.7357 1.8082 51 1 6.5209 1.2991 1.7472 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133153943.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:27:03 Heat of formation + Delta-G solvation = -25.332266 kcal Electronic energy + Delta-G solvation = -32739.633167 eV Core-core repulsion = 28639.687898 eV Total energy + Delta-G solvation = -4099.945269 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.94847 -39.78067 -37.87906 -37.87390 -34.76507 -33.84383 -32.80813 -31.79857 -31.55801 -29.85643 -28.42096 -27.65092 -26.75049 -25.51668 -24.68565 -23.36117 -22.76850 -22.48191 -21.14208 -20.00250 -18.42274 -17.95176 -17.25066 -16.90485 -16.72861 -16.11933 -15.74124 -15.08626 -14.95026 -14.82137 -14.55301 -14.22398 -14.13564 -13.90186 -13.84976 -13.53219 -13.23163 -12.96172 -12.90014 -12.69728 -12.48880 -12.38304 -12.26044 -11.97377 -11.83587 -11.66528 -11.61358 -11.29475 -11.02872 -10.97473 -10.86568 -10.83040 -10.61200 -10.34745 -10.21744 -10.00805 -9.92069 -9.68390 -9.55290 -9.28298 -8.89476 -8.43018 -8.19288 -6.94112 -5.78162 -3.07058 1.00976 1.48310 2.82582 3.15278 3.20430 3.40346 3.46677 3.47411 3.89778 4.27565 4.55349 4.66201 4.84601 4.88453 4.95531 4.98107 5.16094 5.20011 5.31730 5.36980 5.37800 5.40918 5.47167 5.50108 5.55466 5.61141 5.67114 5.71134 5.72672 5.74095 5.75833 5.81885 5.90911 6.01536 6.05688 6.08365 6.10978 6.14146 6.25918 6.31215 6.34053 6.36324 6.49079 6.56568 6.67304 6.75409 6.86928 7.34134 7.54548 7.68120 7.98809 8.34467 8.39319 9.50971 10.07791 10.42696 11.43680 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007441 B = 0.005407 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3762.090034 B = 5177.185010 C = 8030.787556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.294 6.294 3 C 0.366 3.634 4 N -0.541 5.541 5 C 0.197 3.803 6 C -0.106 4.106 7 C -0.195 4.195 8 C -0.004 4.004 9 C -0.211 4.211 10 C 0.580 3.420 11 O -0.536 6.536 12 N -0.605 5.605 13 C 0.113 3.887 14 C -0.128 4.128 15 C -0.084 4.084 16 H 0.073 0.927 17 C -0.152 4.152 18 C -0.103 4.103 19 H 0.073 0.927 20 C 0.159 3.841 21 N -0.732 5.732 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.010 4.010 25 N -0.928 5.928 26 Si 0.903 3.097 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 C 0.108 3.892 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.050 0.950 46 H 0.021 0.979 47 H 0.025 0.975 48 H 0.382 0.618 49 H 0.254 0.746 50 H 0.097 0.903 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.455 -7.565 -9.396 12.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.200 6.200 3 C 0.186 3.814 4 N -0.265 5.265 5 C 0.060 3.940 6 C -0.163 4.163 7 C -0.215 4.215 8 C -0.030 4.030 9 C -0.217 4.217 10 C 0.367 3.633 11 O -0.413 6.413 12 N -0.337 5.337 13 C -0.010 4.010 14 C -0.166 4.166 15 C -0.104 4.104 16 H 0.091 0.909 17 C -0.209 4.209 18 C -0.122 4.122 19 H 0.091 0.909 20 C 0.031 3.969 21 N -0.376 5.376 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.576 5.576 26 Si 0.734 3.266 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.209 1.209 30 C -0.014 4.014 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.161 0.839 38 H 0.161 0.839 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.039 0.961 47 H 0.042 0.958 48 H 0.216 0.784 49 H 0.063 0.937 50 H 0.115 0.885 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.614 -8.284 -9.716 12.783 hybrid contribution 0.491 1.093 0.757 1.418 sum 1.105 -7.190 -8.960 11.541 Atomic orbital electron populations 1.22867 0.77383 1.02792 1.02472 1.86293 1.22708 1.24086 1.86930 1.19517 0.87624 0.84822 0.89424 1.67169 1.40174 0.98211 1.20991 1.21056 0.92187 0.91683 0.89072 1.20789 0.99593 0.93244 1.02674 1.21689 0.93795 0.99954 1.06030 1.21489 1.00578 0.90100 0.90816 1.19629 0.91518 0.94963 1.15560 1.17834 0.78853 0.85703 0.80875 1.90742 1.68354 1.44611 1.37625 1.48121 1.37108 1.16913 1.31588 1.21583 0.95864 0.85903 0.97613 1.21941 1.02007 0.98092 0.94587 1.21070 0.95160 0.94993 0.99133 0.90865 1.21985 0.95574 1.01276 1.02105 1.21685 1.00060 0.95618 0.94864 0.90889 1.20704 0.93511 0.87768 0.94868 1.42387 1.29625 1.18192 1.47443 1.19190 1.07790 0.95855 1.14205 0.91312 1.24691 0.97564 0.98623 0.99782 1.69666 1.15458 1.32248 1.40247 0.86255 0.76781 0.83050 0.80475 1.21787 1.21860 1.20893 1.22135 1.02084 0.89863 0.87354 0.92358 0.88804 0.92077 0.90411 0.90277 0.89637 0.83872 0.83904 0.91384 0.89365 0.91574 0.90879 0.92449 0.91835 0.93093 0.96078 0.95776 0.78417 0.93657 0.88450 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.38 101.05 1.05 1.58 16 2 O -0.29 -5.14 9.67 -21.50 -0.21 -5.35 16 3 C 0.37 6.58 7.50 -16.61 -0.12 6.45 16 4 N -0.54 -9.23 9.11 -9.20 -0.08 -9.31 16 5 C 0.20 3.09 6.78 -82.53 -0.56 2.53 16 6 C -0.11 -1.31 10.16 36.00 0.37 -0.95 16 7 C -0.19 -2.95 9.71 -39.50 -0.38 -3.33 16 8 C 0.00 -0.06 7.56 -38.90 -0.29 -0.36 16 9 C -0.21 -3.67 4.92 -104.69 -0.52 -4.18 16 10 C 0.58 10.23 6.89 -12.48 -0.09 10.14 16 11 O -0.54 -10.72 16.18 1.77 0.03 -10.69 16 12 N -0.60 -9.23 2.98 -173.78 -0.52 -9.75 16 13 C 0.11 1.45 5.94 -3.71 -0.02 1.43 16 14 C -0.13 -1.51 5.63 -26.61 -0.15 -1.66 16 15 C -0.08 -1.07 2.71 -90.58 -0.25 -1.32 16 16 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 17 C -0.15 -1.72 8.11 37.16 0.30 -1.42 16 18 C -0.10 -1.63 2.15 -90.50 -0.19 -1.83 16 19 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 20 C 0.16 3.03 5.19 -4.04 -0.02 3.01 16 21 N -0.73 -17.56 5.38 -59.91 -0.32 -17.89 16 22 C -0.24 -6.40 9.99 -15.06 -0.15 -6.55 16 23 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 25 N -0.93 -26.39 13.06 55.49 0.72 -25.67 16 26 Si 0.90 21.64 29.55 -169.99 -5.02 16.62 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 30 C 0.11 1.67 4.18 -3.56 -0.01 1.66 16 31 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.03 8.07 -51.93 -0.42 0.61 16 37 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 38 H 0.14 1.92 7.40 -52.48 -0.39 1.53 16 39 H 0.07 0.77 6.69 -51.93 -0.35 0.42 16 40 H 0.09 1.22 7.03 -51.93 -0.36 0.85 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.65 4.98 -51.93 -0.26 0.39 16 44 H 0.06 0.77 6.57 -51.92 -0.34 0.42 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.02 0.45 6.73 -51.93 -0.35 0.10 16 48 H 0.38 9.76 6.90 -40.82 -0.28 9.47 16 49 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 50 H 0.10 1.72 3.95 -51.93 -0.21 1.51 16 51 H 0.07 1.05 6.70 -51.93 -0.35 0.70 16 LS Contribution 399.27 15.07 6.02 6.02 Total: -1.00 -32.37 399.27 -8.45 -40.81 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -7.92 Total: 10.37 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -1.14 Total: 4.82 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: -0.20 Total: -62.61 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.18 Total: -16.04 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.37 -8.45 -40.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133153943.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.482 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds